GENSCAN 1.0 Date run: 4-Nov-116 Time: 07:55:59 Sequence gi568815587f:4587863_4695010 : 107148 bp : 41.17% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Sngl + 6204 7151 948 2 0 68 47 441 0.800 32.31 1.02 PlyA + 8549 8554 6 1.05 2.07 PlyA - 10833 10828 6 1.05 2.06 Term - 12979 12414 566 2 2 56 48 468 0.522 33.17 2.05 Intr - 13265 13165 101 1 2 84 95 81 0.831 7.23 2.04 Intr - 13824 13802 23 0 2 124 91 10 0.535 0.32 2.03 Intr - 14550 14290 261 0 0 88 109 207 0.995 19.56 2.02 Intr - 15478 15317 162 1 0 74 31 106 0.651 2.75 2.01 Init - 17642 17217 426 2 0 102 100 287 0.999 27.65 2.00 Prom - 22749 22710 40 -6.15 3.02 PlyA - 23250 23245 6 1.05 3.01 Sngl - 33061 31946 1116 1 0 37 49 417 0.581 29.21 3.00 Prom - 41708 41669 40 -0.75 4.00 Prom + 44767 44806 40 -3.95 4.01 Init + 49224 49289 66 2 0 95 28 55 0.303 0.43 4.02 Intr + 49751 49922 172 1 1 42 29 121 0.484 0.19 4.03 Term + 51915 52903 989 1 2 97 53 479 0.863 36.54 4.04 PlyA + 56035 56040 6 1.05 5.00 Prom + 59361 59400 40 -4.35 5.01 Sngl + 64668 65621 954 2 0 69 43 845 0.871 74.46 5.02 PlyA + 65718 65723 6 1.05 6.00 Prom + 68508 68547 40 -6.85 6.01 Init + 73120 73252 133 0 1 87 75 151 0.730 14.05 6.02 Intr + 73654 73957 304 2 1 20 76 259 0.282 12.62 6.03 Term + 87005 87359 355 2 1 113 34 135 0.025 3.58 6.04 PlyA + 88313 88318 6 1.05 7.03 PlyA - 89995 89990 6 1.05 7.02 Term - 94899 93887 1013 1 2 114 46 843 0.957 73.97 7.01 Init - 98172 98049 124 0 1 38 92 51 0.429 0.88 7.00 Prom - 98376 98337 40 -4.45 8.02 PlyA - 98396 98391 6 1.05 8.01 Term - 103825 102896 930 1 0 82 38 251 0.308 10.65 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815587f:4587863_4695010|GENSCAN_predicted_peptide_1|315_aa METPASFLLVGIPGLQSSHLWLAISLSAMYITALLGNTLIVTAIWMDSTRHEPMYCFLCV LAAVDIVMASSVVPKMVSIFCSGDSSISFSACFTQMFFVHLATAVETGLLLTMAFDRYVA ICKPLHYKRILTPQVMLGMSMAVTIRAVTFMTPLSWMMNHLPFCGSNVVVHSYCKHIALA RLACADPVPSSLYSLIGSSLMVGSDVAFIAASYILILRAVFDLSSKTAQLKALSTCGSHV GVMALYYLPGMASIYAAWLGQDIVPLHTQVLLADLYVIIPATLNPIIYGMRTKQLLEGIW SYLMHFLFDHSNLGS >gi568815587f:4587863_4695010|GENSCAN_predicted_CDS_1|948_bp atggaaacccctgcctccttcctccttgtgggtatcccaggactgcaatcttcacatctt tggctggctatctcactgagtgccatgtacatcacagccctgttaggaaacaccctcatc gtgactgcaatctggatggattccactcggcatgagcccatgtattgctttctgtgtgtt ctggctgctgtggacattgttatggcctcctccgtggtacccaagatggtgagcatcttc tgctcgggagacagctccatcagctttagtgcttgtttcactcagatgttttttgtccac ttagccacagctgtggagacggggctgctgctgaccatggcttttgaccgctatgtagcc atctgcaagcctctacactacaagagaattctcacgcctcaagtgatgctgggaatgagt atggccgtcaccatcagagctgtcacattcatgactccactgagttggatgatgaatcat ctacctttctgtggctccaatgtggttgtccactcctactgtaagcacatagctttggcc aggttagcatgtgctgaccccgtgcccagcagtctctacagtctgattggttcctctctt atggtgggctctgatgtggccttcattgctgcctcctatatcttaattctcagggcagta tttgatctctcctcaaagactgctcagttgaaagcattaagcacatgtggctcccatgtg ggggttatggctttgtactatctacctgggatggcatccatctatgcggcctggttgggg caggatatagtgcccttgcacacccaagtgctgctagctgacctgtacgtgatcatccca gccactttaaatcccatcatctatggcatgaggaccaaacaattgctggagggaatatgg agttatctgatgcacttcctctttgaccactccaacctgggttcatga >gi568815587f:4587863_4695010|GENSCAN_predicted_peptide_2|512_aa MDPTALVEAIVEEVACPICMTFLREPMSIDCGHSFCHSCLSGLWEIPGESQNWGYTCPLC RAPVQPRNLRPNWQLANVVEKVRLLRLHPGMGLKGDLCERHGEKLKMFCKEDVLIMCEAC SQSPEHEAHSVVPMEDVAWEYKWELHEALEHLKKEQEEAWKLEVGERKRTATWKAGCLVG KGVCVSRPVWSWSWPRIQVETRKQSIVWEFEKYQRLLEKKQPPHRQLGAEVAAALASLQR EAAETMQKLELNHSELIQQSQVLWRMIAELKERSQRPVRWMLQDIQEVLNRSKSWSLQQP EPISLELKTDCRVLGLREILKTYAGPFLLADVRLDPDTAYSRLIVSEDRKRVHYGDTNQK LPDNPERFYRYNIVLGSQCISSGRHYWEVEVGDRSEWGLGVCKQNVDRKEVVYLSPHYGF WVIRLRKGNEYRAGTDEYPILSLPVPPRRVGIFVDYEAHDISFYNVTDCGSHIFTFPRYP FPGRLLPYFSPCYSIGTNNTAPLAICSLDGED >gi568815587f:4587863_4695010|GENSCAN_predicted_CDS_2|1539_bp atggatcccacagccttggtggaagccattgtggaagaagtggcctgtcccatctgtatg accttcctgagggagcccatgagcattgactgtggccacagcttctgccacagctgtctc tctggactctgggagatcccaggagaatcccagaactggggttacacctgtcccctctgt cgagctcctgtccagccaaggaacctgcggcctaattggcagctggccaatgttgtagaa aaagtccgtctgctaaggctacatccaggaatggggctgaagggtgacctgtgtgagcgc catggggaaaagctgaagatgttctgcaaagaggatgtcttgataatgtgtgaggcctgc agccagtccccagagcatgaggcccacagtgttgtgccaatggaggatgttgcctgggag tacaagtgggaacttcatgaggccctcgaacatctgaagaaagagcaagaagaggcctgg aagcttgaagttggtgaaaggaaacgaactgccacctggaaggcaggttgcctcgtgggg aaaggagtttgtgtcagtcgtcctgtgtggtcctggagctggcctaggatacaggtggaa acccgaaaacagagtattgtatgggagtttgaaaaataccagcgattactagagaaaaag cagccaccacatcggcagctgggggcagaggtagcagcagctctggccagcctacagcgg gaggcagcggagaccatgcagaaactggagttgaaccatagcgagctcatccagcagagc caggtcctgtggaggatgattgcagagttgaaagagaggtcgcagaggcctgtccgctgg atgttgcaggatattcaggaagtgttaaacaggagcaaatcttggagcttgcagcagcca gaaccaatctccctggagttgaagacagattgccgtgtgctggggctaagagagatcctg aagacttatgcaggaccttttcttctagctgatgtgcgcttggatccagatactgcttac tcccgtctcatcgtgtctgaggacagaaaacgtgtgcactatggagacaccaaccagaaa ctgccagacaatcctgagagattttaccgctataatatcgtcctgggaagccagtgcatc tcctcaggccggcactactgggaggtggaggtgggagacaggtctgagtggggcctggga gtatgtaagcaaaatgtagaccggaaggaggtggtctacttatccccccactatggattc tgggtgataaggctgaggaagggaaatgagtaccgagcaggcaccgatgagtacccaatc ctgtccttgccggtccctcctcgccgggtgggaatcttcgtggattatgaggcccatgac atttctttctacaatgtgactgactgtggctcccacatcttcactttcccccgctatccc ttccctgggcgcctcctgccctattttagtccttgctacagcattggaaccaacaacact gctcctctggccatctgctccctggatggggaggactaa >gi568815587f:4587863_4695010|GENSCAN_predicted_peptide_3|371_aa MALFADDMIVYLENPIVSAQNLLKLISKFSKVSGYKINVQKSQAFLYTNNRQTESQIMSE LPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMA ILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRARIAKSILSQKNKAGGITLPDFK LYYKATVTKTAWYWYQNRDIDQWNRTEPSEIMPHIYNYLIFDKAEKNKQWGKDSLFNKWC WENWLAICRKLKLDPFLTPYTKIDSRWIKDLNVRPKTIKTLEENLGITIQDIGVGKDFMS KTPKAMATKAKIDKWDLIKLKSFCTAKETTIRVDRQPTTWEKIFATYSSDKGLISRIYNE LYPFLSAKHSH >gi568815587f:4587863_4695010|GENSCAN_predicted_CDS_3|1116_bp atggccctgtttgcagacgacatgattgtttatctagaaaaccccatcgtctcagcccaa aatctccttaagctgataagcaagttcagcaaagtctcaggatacaaaatcaatgtacaa aaatcacaagcattcttatacaccaacaacagacaaacagagagccaaatcatgagtgaa ctcccattcacaattgcttcaaagagaataaaatacctaggaatccaacttacaagggat gtgaaggacctcttcaaggagaactacaaaccactgctcaaggaaataaaagaggacaca aacaaatggaagaacattccatgctcatgggtaggaagaatcaatatcgtgaaaatggcc atactgcccaaggtaatttacagattcaatgccatccccatcaagctaccaatgactttc ttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcccgcatc gccaagtcaatcctaagccaaaagaacaaagctggaggcatcacactacctgacttcaaa ctatactacaaggctacagtaaccaaaacagcatggtactggtaccaaaacagagatata gatcaatggaacagaacagagccctcagaaataatgccgcatatctacaactatctgatc tttgacaaagctgagaaaaacaagcaatggggaaaggattccctatttaataaatggtgc tgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttacaccttat acaaaaatcgattcaagatggattaaagatttaaacgttagacctaaaaccataaaaacc ctagaagaaaacctaggcattaccattcaggacataggcgtgggcaaggacttcatgtcc aaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaacta aagagcttctgcacagcaaaagaaactaccatcagagtggacaggcaacctacaacatgg gagaaaattttcgcaacctactcatctgacaaagggctaatatccagaatctacaatgaa ttataccctttcttatcagctaagcacagccactag >gi568815587f:4587863_4695010|GENSCAN_predicted_peptide_4|408_aa MKKRESLTQLRSPWVVSVFGALITVARFLDLVPTQRNFFKPVRPVPSFAYPLSQDRTPQF LPPTLHLSKARGITLPGKKYPGFCMQKPQLLVPIIATSNGNLVHAAYFLLVGIPGLGPTI HFWLAFPLCFMYALATLGNLTIVLIIRVERRLHEPMYLFLAMLSTIDLVLSSITMPKMAS LFLMGIQEIEFNICLAQMFLIHALSAVESAVLLAMAFDRFVAICHPLRHASVLTGCTVAK IGLSALTRGFVFFFPLPFILKWLSYCQTHTVTHSFCLHQDIMKLSCTDTRVNVVYGLFII LSVMGVDSLFIGFSYILILWAVLELSSRRAALKAFNTCISHLCAVLVFYVPLIGLSVVHR LGGPTSLLHVVMANTYLLLPPVVNPLVYGAKTKEICSRVLCMFSQGGK >gi568815587f:4587863_4695010|GENSCAN_predicted_CDS_4|1227_bp atgaagaagcgagagtccctgacacagcttcgatccccttgggtagttagtgtgttcgga gcgctgatcacagtagcccggttcctggaccttgttcctacacagaggaatttcttcaag cctgtgagacccgttccaagctttgcctatcctttgtcccaggacaggactcctcagttc ctgcctcctactcttcacttaagcaaggcaaggggaattactttaccaggaaaaaaatac cctggattttgtatgcagaagccccagctcttggtccctatcatagccacttcaaatgga aatctggtccacgcagcatacttccttttggtgggtatccctggcctggggcctaccata cacttttggctggctttcccactgtgttttatgtatgccttggccaccctgggtaacctg accattgtcctcatcattcgtgtggagaggcgactgcatgagcccatgtacctcttcctg gccatgctttccactattgacctagtcctctcctctatcaccatgcccaagatggccagt cttttcctgatgggcatccaggagatcgagttcaacatttgcctggcccagatgttcctt atccatgctctgtcagccgtggagtcagctgtcctgctggccatggcttttgaccgcttt gtggccatttgccacccattgcgccatgcttctgtgctgacagggtgtactgtggccaag attggactatctgccctgaccagggggtttgtattcttcttcccactgcccttcatcctc aagtggttgtcctactgccaaacacatactgtcacacactccttctgtctgcaccaagat attatgaagctgtcctgtactgacaccagggtcaatgtggtttatggactcttcatcatc ctctcagtcatgggtgtggactctctcttcattggcttctcatatatcctcatcctgtgg gctgttttggagctgtcctctcggagggcagcactcaaggctttcaacacctgcatctcc cacctctgtgctgttctggtcttctatgtacccctcattgggctctcggtggtgcatagg ctgggtggtcccacctccctcctccatgtggttatggctaatacctacttgctgctacca cctgtagtcaacccccttgtctatggagccaagaccaaagagatctgttcaagggtcctc tgtatgttctcacaaggtggcaagtga >gi568815587f:4587863_4695010|GENSCAN_predicted_peptide_5|317_aa MVDPNGNESSATYFILIGLPGLEEAQFWLAFPLCSLYLIAVLGNLTIIYIVRTEHSLHEP MYIFLCMLSGIDILISTSSMPKMLAIFWFNSTTIQFDACLLQMFAIHSLSGMESTVLLAM AFDRYVAICHPLRHATVLTLPRVTKIGVAAVVRGAALMAPLPVFIKQLPFCRSNILSHSY CLHQDVMKLACDDIRVNVVYGLIVIISAIGLDSLLISFSYLLILKTVLGLTREAQAKAFG TCVSHVCAVFIFYVPFIGLSMVHRFSKRRDSPLPVILANIYLLVPPVLNPIVYGVKTKEI RQRILRLFHVATHASEP >gi568815587f:4587863_4695010|GENSCAN_predicted_CDS_5|954_bp atggtggatcccaatggcaatgaatccagtgctacatacttcatcctaataggcctccct ggtttagaagaggctcagttctggttggccttcccattgtgctccctctaccttattgct gtgctaggtaacttgacaatcatctacattgtgcggactgagcacagcctgcatgagccc atgtatatatttctttgcatgctttcaggcattgacatcctcatctccacctcatccatg cccaaaatgctggccatcttctggttcaattccactaccatccagtttgatgcttgtctg ctacagatgtttgccatccactccttatctggcatggaatccacagtgctgctggccatg gcttttgaccgctatgtggccatctgtcacccactgcgccatgccacagtacttacgttg cctcgtgtcaccaaaattggtgtggctgctgtggtgcggggggctgcactgatggcaccc cttcctgtcttcatcaagcagctgcccttctgccgctccaatatcctttcccattcctac tgcctacaccaagatgtcatgaagctggcctgtgatgatatccgggtcaatgtcgtctat ggccttatcgtcatcatctccgccattggcctggactcacttctcatctccttctcatat ctgcttattcttaagactgtgttgggcttgacacgtgaagcccaggccaaggcatttggc acttgcgtctctcatgtgtgtgctgtgttcatattctatgtacctttcattggattgtcc atggtgcatcgctttagcaagcggcgtgactctccgctgcccgtcatcttggccaatatc tatctgctggttcctcctgtgctcaacccaattgtctatggagtgaagacaaaggagatt cgacagcgcatccttcgacttttccatgtggccacacacgcttcagagccctag >gi568815587f:4587863_4695010|GENSCAN_predicted_peptide_6|263_aa MVDHGHGDTWNKEDKDSRNVGNAGVEGPDALPGSSQTHDCVQDEEHSQGDGQCGQGEARF GERQHGQEVAHGLVQAGVPLHSQEDQAVPREGHSVHGGEGDGEPAMNRLQPWDANHEKSR RLEEGDVDIGLGREHPREAAEGSGEIRDAETLKANDPVPVTEPSLISEGQVLHCCPCFIW KKQKYTEECDLSKVTSCQGSLFPVSVITLLGRSMPVHAGPCLPGQATIFIHKEYTGKSER PGFKSEVLSDSENYITPSCASVS >gi568815587f:4587863_4695010|GENSCAN_predicted_CDS_6|792_bp atggtggatcatggacacggtgatacctggaataaagaagacaaagacagccggaatgtg ggaaacgcaggtgttgagggcccagatgcgctccctgggagcagccagacccatgactgt gtgcaggatgaagagcacagccaaggtgatgggcagtgtggacaaggtgaggcccgcttt ggggagcgccagcatggacaggaagtagcacatgggctggtgcaggctggggttcctctt cacagccaggaggatcaggcagttcccagggagggccacagtgtacatggaggagaaggg gatggcgagccagccatgaaccgcctccagccctgggatgccaatcatgagaagagcagg cggttggaagaaggagatgttgacataggtctgggaagggagcatcctagggaggcagcc gaaggctctggagagataagagatgcagaaacattgaaagcaaatgatcctgtgcctgtg actgaaccctccttgatctccgaagggcaagtgttacactgttgcccgtgtttcatctgg aaaaaacagaagtacacagaagaatgtgatttgtccaaagtcacctcctgtcagggaagt cttttcccagtatcagtcatcactttgctgggccggtccatgccagtccatgctggtcca tgcctgcctggtcaggctacaatcttcattcacaaagagtacactgggaagtcagagaga cctgggttcaagtctgaagtattgagtgactcagaaaattatataactcccagctgtgcc tcagtttcctag >gi568815587f:4587863_4695010|GENSCAN_predicted_peptide_7|378_aa MTNKYLMADGSTSVSVFKDYSDNDKARLMCEAYLERMADRTDCQCDLTLSSHPSSVPAMS SCNFTHATFVLIGIPGLEKAHFWVGFPLLSMYVVAMFGNCIVVFIVRTERSLHAPMYLFL CMLAAIDLALSTSTMPKILALFWFDSREISFEACLTQMFFIHALSAIESTILLAMAFDRY VAICHPLRHAAVLNNTVTAQIGIVAVVRGSLFFFPLPLLIKRLAFCHSNVLSHSYCVHQD VMKLAYADTLPNVVYGLTAILLVMGVDVMFISLSYFLIIRTVLQLPSKSERAKAFGTCVS HIGVVLAFYVPLIGLSVVHRFGNSLHPIVRVVMGDIYLLLPPVINPIIYGAKTKQIRTRV LAMFKISCDKDLQAVGGK >gi568815587f:4587863_4695010|GENSCAN_predicted_CDS_7|1137_bp atgaccaataaatacttaatggctgatggaagtacttctgtttctgtgttcaaagattac agtgacaatgacaaagcaagactcatgtgtgaggcatacttagaaaggatggcagataga acagactgccagtgtgacctcaccctctccagtcacccctcctcagttccagctatgagt tcctgcaacttcacacatgccacctttgtgcttattggtatcccaggattagagaaagcc catttctgggttggcttccccctcctttccatgtatgtagtggcaatgtttggaaactgc atcgtggtcttcatcgtaaggacggaacgcagcctgcacgctccgatgtacctctttctc tgcatgcttgcagccattgacctggccttatccacatccaccatgcctaagatccttgcc cttttctggtttgattcccgagagattagctttgaggcctgtcttacccagatgttcttt attcatgccctctcagccattgaatccaccatcctgctggccatggcctttgaccgttat gtggccatctgccacccactgcgccatgctgcagtgctcaacaatacagtaacagcccag attggcatcgtggctgtggtccgcggatccctcttttttttcccactgcctctgctgatc aagcggctggccttctgccactccaatgtcctctcgcactcctattgtgtccaccaggat gtaatgaagttggcctatgcagacactttgcccaatgtggtatatggtcttactgccatt ctgctggtcatgggcgtggacgtaatgttcatctccttgtcctattttctgataatacga acggttctgcaactgccttccaagtcagagcgggccaaggcctttggaacctgtgtgtca cacattggtgtggtactcgccttctatgtgccacttattggcctctcagtggtacaccgc tttggaaacagccttcatcccattgtgcgtgttgtcatgggtgacatctacctgctgctg cctcctgtcatcaatcccatcatctatggtgccaaaaccaaacagatcagaacacgggtg ctggctatgttcaagatcagctgtgacaaggacttgcaggctgtgggaggcaagtga >gi568815587f:4587863_4695010|GENSCAN_predicted_peptide_8|309_aa NITSTSIIFLLTGVPGLEAFHTWISIPFCFLSVTALLGNSLILFATITQPSLHEPMYYFL SMLSATDLGLSISTLVTMLSIFWFNVREISFNACLSHMFFIKFFTVMESSVLLAMAFDRF VAVSNPLRYAMILTDSRIAQIGVASVIRGLLMLTPMVALLIRLSYCHSQVLHHSYCYHPD VMKLSCTDTRINSAVGLTAMFSTVGVDLLLILLSYVLIIRTVLSVASPEERKETFSTCVS HIVAFAIYYIPLISLSIVHRFGKQAPAYVHTMIANTYLLISPLMNPVIYSVKTKQIRRAV IKILHSKET >gi568815587f:4587863_4695010|GENSCAN_predicted_CDS_8|930_bp aatatcacctccacttccatcattttcctgctcactggtgttcctgggctggaagccttc cacacctggatctccattcccttctgcttcctctctgtaactgctctcttgggaaacagc ctgatcctcttcgctaccatcactcagcccagcctccacgaaccaatgtactatttcctc tccatgctgtccgccactgacctcggcctgtccatatccactctggtcaccatgctgagt atattctggttcaatgtgagggaaatcagctttaatgcctgcttgtcccacatgttcttt attaaattcttcactgtcatggaatcctcagtgctgttggccatggcttttgatcgtttt gtggccgtctctaatccccttaggtatgccatgattttaactgactccagaatagctcaa attggagtggcaagtgtcatcagggggctcctaatgctgacaccaatggtagcacttctt ataagactttcctactgccacagccaagtactccaccactcctactgctaccaccctgat gtgatgaagctctcatgcacagacaccagaatcaacagtgcagttgggctgactgccatg ttctctactgttggtgtagacttacttctcatcctcctttcttatgttttgatcattagg actgtccttagcgttgcttccccagaagagaggaaggaaaccttcagtacatgtgtctcc cacattgtggcttttgctatatattacattccattgatcagtctgtccattgttcacaga tttgggaaacaagccccagcctatgtacatactatgattgctaacacctacctgctgatc tcccctttgatgaaccctgtcatctacagtgtgaaaaccaaacagatacgtagagctgtg ataaaaattctccattccaaagaaacataa