GENSCAN 1.0	Date run:  8-Nov-116	Time: 12:07:47

Sequence gi568815586r:85704705_85936201 : 231497 bp : 35.25% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.06 PlyA -    166    161    6                               1.05
 1.05 Term -   4032   3830  203  1  2   17   54   174 0.539   3.47
 1.04 Intr -   7530   7290  241  0  1   70   75   150 0.790   8.10
 1.03 Intr -   8746   8587  160  0  1   86   51    46 0.450  -0.23
 1.02 Intr -  28704  28555  150  2  0   -1   44   258 0.045  10.86
 1.01 Init -  45497  45346  152  2  2   84   75    75 0.114   5.36
 1.00 Prom -  45837  45798   40                              -5.15

 2.00 Prom +  60856  60895   40                              -2.75
 2.01 Sngl +  81738  81956  219  2  0   88   42   285 0.971  18.81
 2.02 PlyA +  82615  82620    6                               1.05

 3.00 Prom +  83150  83189   40                              -6.15
 3.01 Init +  84099  84262  164  2  2   70   72    67 0.366   2.55
 3.02 Term +  84959  85478  520  2  1   30   38   263 0.433   8.28
 3.03 PlyA +  85611  85616    6                               1.05

 4.02 PlyA -  87617  87612    6                               1.05
 4.01 Sngl - 101242  99998 1245  1  0   75   32  1105 0.948  99.17
 4.00 Prom - 103318 103279   40                              -5.95

 5.02 PlyA - 103455 103450    6                               1.05
 5.01 Sngl - 118772 118518  255  2  0   36   42   227 0.951   7.76
 5.00 Prom - 119837 119798   40                              -7.55

 6.00 Prom + 121624 121663   40                              -2.15
 6.01 Init + 126340 126423   84  0  0   65   82   -24 0.184  -4.43
 6.02 Term + 132215 132484  270  1  0   44   45   249 0.733  10.70
 6.03 PlyA + 133075 133080    6                               1.05

 7.00 Prom + 133390 133429   40                              -5.45
 7.01 Init + 137089 137204  116  0  2   36   78    70 0.443   0.53
 7.02 Intr + 139449 139741  293  0  2   79   80   127 0.367   6.85
 7.03 Term + 140087 140325  239  0  2   62   42   121 0.413   0.25
 7.04 PlyA + 141180 141185    6                               1.05

 8.05 PlyA - 143179 143174    6                               1.05
 8.04 Term - 148012 147923   90  1  0  124   38    78 0.523   3.14
 8.03 Intr - 150745 150583  163  0  1   77   64    43 0.425  -0.14
 8.02 Intr - 151570 151074  497  1  2   71   31   264 0.201   9.86
 8.01 Init - 152662 152516  147  1  0   96   46   105 0.406   6.19
 8.00 Prom - 153535 153496   40                              -5.75

 9.00 Prom + 155454 155493   40                              -4.55
 9.01 Init + 161682 161743   62  2  2   62   80    85 0.019   3.87
 9.02 Intr + 169363 169494  132  1  0   48   57    96 0.012   1.34
 9.03 Intr + 173694 173865  172  0  1   31   65   111 0.170   2.12
 9.04 Term + 177519 177671  153  2  0   90   54   137 0.998   7.44
 9.05 PlyA + 177675 177680    6                               1.05

10.02 PlyA - 177689 177684    6                               1.05
10.01 Sngl - 189696 189388  309  0  0   91   50   188 0.916  10.95
10.00 Prom - 191823 191784   40                              -2.95

11.00 Prom + 199626 199665   40                              -4.15
11.01 Init + 204183 204307  125  2  2   71  115   117 0.892  12.39
11.02 Intr + 208303 208491  189  1  0   76   80    74 0.711   3.18
11.03 Term + 220854 220986  133  0  1   65   40    88 0.134  -1.72
11.04 PlyA + 221072 221077    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  28704  28551  154  2  1   -1   54   276 0.904  11.71
S.002 Sngl -  38250  37825  426  0  0   48   43   217 0.970   9.24
S.003 Init +  62882  62891   10  1  1  106  111     2 0.834   4.99


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586r:85704705_85936201|GENSCAN_predicted_peptide_1|301_aa
MSTKTMTADTKLAHLRKMESSAPEFTNSSRSKTYRCQYWASQYQSDNKIIRIGCLQAENR
EADSAAFSLRAPEKRLVQGPESKDRRPKNPESDIQGQKKKNWSNGLNLLIIYHVLGSYML
LHLIHRSLIAEPYYHFTDVENEARDVKYLAHVHTHLHGEEDGHMGGGHMAQSPGKKDSDY
CVISGKGVCQEQGEGVCVSKGLWRPRILPNSTAPEGSRSSGEGSLPAPTMGSTADVMVLP
DMIQKAVVDQTGSRPPTVTMTFFCANLALGSALELLLSPTAELVIGSCHIKSTCCHTSQS
N

>gi568815586r:85704705_85936201|GENSCAN_predicted_CDS_1|906_bp
atgagcactaaaactatgactgcagacaccaagttggctcatctaaggaaaatggaaagc
tctgcaccggaatttactaattcaagcaggtccaaaacatacagatgtcaatactgggca
agtcagtatcagtcagacaacaaaattatcaggataggttgtctgcaagctgaaaacagg
gaagctgacagtgcagccttcagtctgagagcccctgagaagcggctggtgcaaggccca
gagtccaaagaccgaagaccaaagaacccggagtctgatatacaagggcagaagaagaag
aattggagtaacggcttaaatttattaattatttaccatgtgctaggctcctacatgctg
ctgcatttaatccatcgatccttgattgctgaaccttattatcatttcacagatgtagaa
aatgaggccagagatgttaaatatcttgcacatgttcacacacacttacatggagaggag
gatggacatatgggtggaggacacatggcccaatcccctggaaagaaggactctgactat
tgtgtaatctcggggaagggagtgtgccaggaacagggagaaggagtgtgtgtgagcaaa
ggcctctggaggcccaggattctgcccaactcaacagccccagagggcagtagatcctca
ggggagggctctctccctgcccccacaatgggctccacagcagatgtaatggttttgcca
gacatgattcagaaagcagtagtggatcagactggcagcagaccaccaacagtaaccatg
acctttttctgtgcaaatttggctttgggaagtgctttggagcttcttctcagcccaact
gctgagctggtcatcggcagttgtcatataaaatccacctgttgtcatacatcacaatcc
aattga

>gi568815586r:85704705_85936201|GENSCAN_predicted_peptide_2|72_aa
MGKKQSRKTENSKNQSASPPPKERSFSPTMEQSCKENDFDKLREEGFRQSNFSELKEEVR
THRKEAKNHEKD

>gi568815586r:85704705_85936201|GENSCAN_predicted_CDS_2|219_bp
atggggaaaaaacagagcagaaaaactgaaaattctaaaaatcagagtgcctctccccct
ccaaaggaacgaagcttctcgccaacaatggaacaaagctgtaaggagaatgactttgac
aagttgagagaagaaggcttcagacaatcaaacttctccgagctaaaggaggaagttcga
acacatcgcaaagaagctaaaaaccatgaaaaagattag

>gi568815586r:85704705_85936201|GENSCAN_predicted_peptide_3|227_aa
MDKFLDTYTLPRLNQEEVESLNRQITGSEIEAIINSLQTKKSPGPDGFTAEFYQSPKSPK
LISNFSKVSGYKINVQKSQAFLYTNNRLTESQTMSELPFTIVSKRIKYLGIQLKKDVKDL
LKENYKTLLNEIKEDTNKWKNIPCSWVGRINVVKMAILPKLIYRFNAIPIKLPMTFFTEL
EKTTLKFIWNQKRACIAKSILSQKNKAGGITLPDFKLHYKATVSKTA

>gi568815586r:85704705_85936201|GENSCAN_predicted_CDS_3|684_bp
atggataaattcctggacacatacactctcccaagactaaaccaggaagaagttgaatct
ctgaatagacaaataacaggctctgaaattgaggcaataattaatagcttacaaaccaaa
aaaagtccaggaccggacggattcacagccgagttctaccagagcccaaaatctcctaag
ctgataagcaacttcagcaaagtctcaggatacaaaatcaatgtgcaaaaatcacaagca
ttcttatacaccaataacagactaacagagagccaaaccatgagtgaactcccgttcaca
attgtttcaaagagaataaaatacctaggaatccaacttaaaaaggatgtgaaggacctc
cttaaggagaactacaaaacactgctcaacgaaataaaagaagacacaaacaaatggaag
aatattccatgctcatgggtaggaagaatcaatgtcgtgaaaatggccatactgcccaaa
ttaatttatagattcaatgccatccccatcaagctaccaatgactttcttcacagaattg
gaaaaaactactttaaagttcatatggaaccaaaaaagagcctgcattgccaagtcaatc
ctaagccaaaagaacaaagctggaggcatcacgctacctgacttcaaactacactacaag
gctacagtatccaaaacagcatag

>gi568815586r:85704705_85936201|GENSCAN_predicted_peptide_4|414_aa
MDSEEKEIVVWVCQEEKLVCGLTKRTTSADVIQALLEEHEATFGEKRFLLGKPSDYCIIE
KWRGSERVLPPLTRILKLWKAWGDEQPNMQFVLVKADAFLPVPLWRTAEAKLVQNTEKLW
ELSPANYMKTLPPDKQKRIVRKTFRKLAKIKQDTVSHDRDNMETLVHLIISQDHTIHQQV
KRMKELDLEIEKCEAKFHLDRVENDGENYVQDAYLMPSFSEVEQNLDLQYEENQTLEDLS
ESDGIEQLEERLKYYRILIDKLSAEIEKEVKSVCIDINEDAEGEAASELESSNLESVKCD
LEKSMKAGLKIHSHLSGIQKEIKYSDSLLQMKAKEYELLAKEFNSLHISNKDGCQLKENR
AKESEVPSSNGEIPPFTQRVFSNYTNDTDSDTGISSNHSQDSETTVGDVVLLST

>gi568815586r:85704705_85936201|GENSCAN_predicted_CDS_4|1245_bp
atggattcagaagagaaggaaattgtggtttgggtttgccaagaagagaagcttgtctgt
gggctgactaaacgcaccacctctgctgatgtcatccaggctttgcttgaggaacatgag
gctacgtttggagagaaacgatttcttctggggaagcccagtgattactgcatcatagag
aagtggagaggctccgaaagggttcttcctccactaactagaatcctgaagctttggaaa
gcgtggggagatgagcagcccaatatgcaatttgttttggttaaagcagatgcttttctt
ccagttcctttgtggcggacagctgaagccaaattagtgcaaaacacagaaaaattgtgg
gagctcagcccagcaaactacatgaagactttaccaccagataaacaaaaaagaatagtc
aggaaaactttccggaaactggctaaaattaagcaggacacagtttctcatgatcgagat
aatatggagacattagttcatctgatcatttcccaggaccatactattcatcagcaagtc
aagagaatgaaagagctggatctggaaattgaaaagtgtgaagctaagttccatcttgat
cgagtagaaaatgatggagaaaactatgttcaggatgcatatttaatgcccagtttcagt
gaagttgagcaaaatctagacttgcagtatgaggaaaaccagactctggaggacctgagc
gaaagtgatggaattgaacagctggaagaacgactgaaatattaccgaatactcattgat
aagctctctgctgaaatagaaaaagaggtaaaaagtgtttgcattgatataaatgaagat
gcggaaggggaagctgcaagtgaactggaaagctctaatttagagagtgttaagtgtgat
ttggagaaaagcatgaaagctggtttgaaaattcactctcatttgagtggcatccagaaa
gagattaaatacagtgactcattgcttcagatgaaagcaaaagaatatgaactcctggcc
aaggaattcaattcacttcacattagcaacaaagatgggtgccagttaaaggaaaacaga
gcgaaggaatctgaggttcccagtagcaatggggagattcctccctttactcaaagagta
tttagcaattacacaaatgacacagactcggacactggtatcagttctaaccacagtcag
gactccgaaacaacagtaggagatgtggtgctgttgtcaacatag

>gi568815586r:85704705_85936201|GENSCAN_predicted_peptide_5|84_aa
MWKKQGACGIWEEAAGKAKEDPCENGIVTVKERKAARMGGGGHNALCYKEDMSDQFCKWL
LGVAVKRFLITLRRKVATEDEWRQ

>gi568815586r:85704705_85936201|GENSCAN_predicted_CDS_5|255_bp
atgtggaagaagcaaggtgcatgtgggatctgggaagaagcagctggaaaagcaaaggaa
gatccatgtgagaatggcatcgtaacagtcaaggagaggaaagctgcaagaatgggagga
ggaggtcacaatgcattatgttacaaagaggatatgtcagatcagttctgcaagtggcta
ttgggtgtggcagttaagagatttctgataaccctaagaagaaaagtggctactgaggat
gagtggaggcagtag

>gi568815586r:85704705_85936201|GENSCAN_predicted_peptide_6|117_aa
MRFHFRKLICKRQRDSLSRTGIHIHLQEAPAPHSQVHLAKVEGPEGPQGSRADASQFGLG
TSWSLVFDSQGVYVDPYPIFDIHWAFRALGISEEKQTAPAPQGVKKTHRGDLLELEM

>gi568815586r:85704705_85936201|GENSCAN_predicted_CDS_6|354_bp
atgaggtttcattttagaaagctgatatgtaagaggcaaagagattccttgtcaaggact
ggtattcatatacacctgcaagaggcccctgctccacactctcaagttcatcttgcaaaa
gtcgaaggacctgaaggaccacagggctccagggctgatgcatcacagtttggtctagga
accagctggagtttagtgtttgactcccaaggcgtttatgttgacccctaccccatcttt
gacattcactgggcctttagagccctgggaatttcagaggaaaagcaaactgctcctgcc
cctcaaggagtaaagaagacacaccgaggggatctgctggagctcgaaatgtga

>gi568815586r:85704705_85936201|GENSCAN_predicted_peptide_7|215_aa
MYLSSAVRSCLKFAHGNRKLSLKIGMDEASLTKPFKYGCPLWTLGSDKHKREAKWGLREA
RHWLAWTFFMNSLGTIESSRRQTGSKEERDGSLVKPHLPAGESLKPGGQAPVSWTTEGTC
GVFSCARPWQPMDQSADEGERRTMALRGPQTWEAPRARAVTLSLGPCRSWSLQASRHHHI
PQCQPWKLLAVYLVQPQPLSELVPMPAPGAAHPLQ

>gi568815586r:85704705_85936201|GENSCAN_predicted_CDS_7|648_bp
atgtacctatcttcagcagttcgttcctgtcttaaatttgctcatggtaataggaaactg
tctctaaaaattggaatggatgaggcttctctcacaaagccttttaaatatggatgcccc
ctctggactttgggctctgataagcacaagagggaggccaagtggggactgagggaagct
cggcactggcttgcctggaccttcttcatgaacagcctgggcaccatagaaagcagtaga
aggcagacaggctccaaggaagaaagggatgggtcccttgtgaagccccaccttccggct
ggggaaagcctaaagcctgggggccaggcgccagtctcctggaccacagagggaacttgt
ggtgttttttcctgtgcccgcccatggcagcccatggaccaatcagcagatgaaggggag
agaagaactatggcccttcggggaccccagacctgggaagctccccgagccagggctgtt
actctctctttggggccctgcaggtcctggagtctccaagcttctcggcaccaccacatt
ccccagtgtcagccatggaagctgcttgcagtgtacctggtccagccacagcctctcagt
gagctggtgcccatgccagcacctggagctgcccatccactgcagtag

>gi568815586r:85704705_85936201|GENSCAN_predicted_peptide_8|298_aa
MGFLYVVQAGLELLDSSNPPASASQNSEIDGGGGPSEAAAVGTSAAARELPTYLILSGCR
TSTQDPLNGRTERAVTQTGLKHPPAHNFVGDKKERRGKERKAAVVLVYFHTADKDIPETG
KKKRFNGLTVAHRWGGLTIMVEGKEELVTSYMDGSGQRQRARAGKLPFLKPSHHVRLIHC
HKNSAEMTCPHDSIISHWVPPTTHENYKSYKIRFGHGMWTGSMSRIQAARPCGQNKLSGR
KKNSGKSATGHRSFKLEKQHPNHPMTALQPTQHKDDEDEDVYDDHFYLIKNNYIFYSV

>gi568815586r:85704705_85936201|GENSCAN_predicted_CDS_8|897_bp
atggggtttctctatgttgtccaggctggtctcgaactcctcgattcaagcaatccacct
gcctcagcttcccaaaattctgagattgatggtggtggtggcccatctgaagcagctgct
gtgggaacatcagctgcagcaagggagttgcccacatacctcattctttctggatgcagg
acaagtactcaggacccattgaatggcagaactgaaagagctgtcacacaaacaggactg
aaacacccccctgctcataactttgtgggtgacaagaaggagagaagagggaaagagaga
aaagctgcagttgtcttagtttatttccacactgctgataaagacatacctgagactggg
aagaaaaagaggtttaatggacttacagttgcacatcgctggggaggcctcacaatcatg
gtggaaggaaaggaggagctagtcacatcttacatggatggcagtgggcaaagacagaga
gctcgtgcagggaaactcccgtttttaaaaccatcacatcacgtcagacttattcactgt
cacaagaacagcgcagaaatgacctgcccccatgattcaatcatctcccactgggtccct
cccacaacacatgaaaattataagagctacaagataagatttgggcatgggatgtggact
ggtagcatgagccgaatacaggctgccaggccgtgtgggcagaacaagctcagtgggcgc
aagaaaaactcaggcaaaagtgccaccggccacagaagtttcaagctggaaaagcaacac
cctaaccatcctatgacagcattacagcctactcaacataaagatgatgaggatgaagat
gtttatgatgatcacttctacttaataaagaataactatattttttattctgtgtga

>gi568815586r:85704705_85936201|GENSCAN_predicted_peptide_9|172_aa
MLTHRLPWLGVGGPLPHVALRNPKQQQQQLGKIVTFTQGSEMGEESRGDKGKGEEKAGQR
GEGWSLVNNLNSPAEETGEVHEEELVARRKLPTALDGFSLEAMLTIYQLHKICHSRAFQH
WELIQEDILDTGNDKNGKEEVIKRKIPYILKRQLYENKPRRPYILKRDSYYY

>gi568815586r:85704705_85936201|GENSCAN_predicted_CDS_9|519_bp
atgctcactcaccgcctcccttggctgggggtagggggtcccctgccccatgtggctctc
agaaatccaaagcagcagcagcagcaattagggaagatcgtcactttcactcaaggttca
gaaatgggggaggagagcaggggggacaaaggaaaaggggaggagaaagcagggcaaaga
ggggagggatggagtcttgtaaataatttgaacagcccagctgaggaaacaggagaagtt
catgaagaggagcttgttgcaagaaggaaacttcctactgctttagatggctttagcttg
gaagcaatgttgacaatataccagctccacaaaatctgtcacagcagggcttttcaacac
tgggagttaatccaggaagatattcttgatactggaaatgacaaaaatggaaaggaagaa
gtcataaagagaaaaattccttatattctgaaacggcagctgtatgagaataaacccaga
agaccctacatactcaaaagagattcttactattactga

>gi568815586r:85704705_85936201|GENSCAN_predicted_peptide_10|102_aa
MDKWDHIKLKNFYIAKKTINKVKRQFTGEKIFAHYPSEIGLITTICKELKQLYTRKKSNN
LIKRWTIDLNAHFSKEDIQMASRYMKRCSTSLIIREMQIKLQ

>gi568815586r:85704705_85936201|GENSCAN_predicted_CDS_10|309_bp
atggacaaatgggatcacatcaagttaaaaaacttctacatagcaaagaagacaatcaac
aaagtgaagagacaattcacaggagagaaaatatttgcacattacccatctgaaatcgga
ttaattaccacaatatgtaaggagctcaagcaactctatacgagaaaaaaatctaataat
ttgattaaaagatggacaatagatctgaatgcacatttctcaaaagaagacatacaaatg
gcaagcaggtatatgaaaaggtgctcaacatcattgatcatcagagaaatgcaaatcaaa
ctacaatga

>gi568815586r:85704705_85936201|GENSCAN_predicted_peptide_11|148_aa
MGKNFMTKTQKAIATKAKIDKWDLIKRKSFCTAKEAIIRENSLHVLCFFFFFEGIAENFL
NLEKDINIQVQEEYRTPNRFNPNKTKSRHLIIKLPKNKDKEKMARHCMEKHCENPCPVLF
RSNYRCMQPPVMHPLLAQLITTLSRRPP

>gi568815586r:85704705_85936201|GENSCAN_predicted_CDS_11|447_bp
atgggcaagaacttcatgactaaaacacaaaaagcaattgcaacaaaagccaaaattgac
aaatgggatctaattaaacgaaagagcttctgcacagcaaaagaagctatcatcagggag
aacagtttacatgtcctttgtttctttttcttttttgaagggatagcagagaacttctta
aacctagagaaagacataaatatccaagtacaagaagaatatagaacaccaaacagattt
aacccaaataagactaaatcaagacatttaataatcaaactccccaagaacaaggataaa
gaaaagatggccagacattgtatggaaaagcactgtgaaaatccctgtcctgttctgttc
cgttctaattaccggtgcatgcagcccccagtcatgcaccccctgcttgctcaattgatc
acaaccctctcccgcagacccccttag