GENSCAN 1.0	Date run:  6-Nov-116	Time: 12:28:51

Sequence gi568815586r:79492610_79790244 : 297635 bp : 38.80% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +    708    759   52  2  1   61   85    63 0.348   4.67
 1.02 Intr +   7036   7176  141  2  0   30   19   202 0.201   6.90
 1.03 Intr +  10006  10101   96  2  0   85   81    36 0.084   1.66
 1.04 Intr +  10363  10487  125  2  2   31   89    76 0.913   1.38
 1.05 Intr +  12081  12206  126  2  0   84   -1   147 0.027   5.36
 1.06 Intr +  15092  15134   43  1  1   46   62    34 0.009  -6.51
 1.07 Intr +  16943  17090  148  0  1   81   88   124 0.343  10.07
 1.08 Term +  24811  24940  130  1  1   23   40   163 0.626   1.67
 1.09 PlyA +  25409  25414    6                               1.05

 2.00 Prom +  36668  36707   40                              -2.05
 2.01 Init +  49765  49801   37  0  1   96  115    51 0.595   8.83
 2.02 Intr +  50016  50149  134  1  2   84   14    31 0.059  -5.26
 2.03 Intr +  53457  53526   70  2  1   57   98   123 0.083   8.04
 2.04 Intr +  60436  60573  138  2  0   38  113    99 0.073   6.91
 2.05 Term +  66123  66562  440  1  2   53   39   490 0.919  35.05
 2.06 PlyA +  66639  66644    6                               1.05

 3.00 Prom +  67433  67472   40                              -7.85
 3.01 Init +  69208  69409  202  0  1   52   75   214 0.312  14.44
 3.02 Intr +  72927  73069  143  1  2   41   36    83 0.169  -2.45
 3.03 Intr +  73322  73498  177  1  0  -16   26   241 0.195   6.69
 3.04 Intr +  77239  77352  114  0  0   99   77    67 0.962   6.42
 3.05 Term +  82162  82503  342  0  0    0   41   333 0.482  13.33
 3.06 PlyA +  82574  82579    6                               1.05

 4.09 PlyA -  88212  88207    6                               1.05
 4.08 Term - 100084  99998   87  1  0   82   44   111 0.605   2.78
 4.07 Intr - 101824 101720  105  1  0   67   89    70 0.937   4.49
 4.06 Intr - 104049 103902  148  2  1   67   86    99 0.757   6.92
 4.05 Intr - 121000 120966   35  1  2   88  116    -1 0.149  -1.20
 4.04 Intr - 128598 128467  132  0  0   77  109   241 0.871  25.02
 4.03 Intr - 197606 197120  487  1  1  -28   83   425 0.348  22.49
 4.02 Intr - 197782 197665  118  2  1  104   78   162 0.923  15.40
 4.01 Init - 198031 197947   85  1  1   75   82   163 0.896  13.43
 4.00 Prom - 205526 205487   40                              -7.95

 5.03 PlyA - 207177 207172    6                               1.05
 5.02 Term - 218308 218121  188  2  2   62   36   200 0.791   8.87
 5.01 Init - 219737 219581  157  2  1   40  115   150 0.985  13.02
 5.00 Prom - 222289 222250   40                              -5.65

 6.00 Prom + 236083 236122   40                              -7.35
 6.01 Sngl + 237032 237250  219  1  0   49   48   212 0.946   8.21
 6.02 PlyA + 237437 237442    6                               1.05

 7.00 Prom + 243002 243041   40                              -3.05
 7.01 Init + 252857 252973  117  1  0   87   75    82 0.597   7.05
 7.02 Term + 270817 270933  117  0  0   81   38    56 0.025  -2.54
 7.03 PlyA + 274214 274219    6                               1.05

 8.06 PlyA - 275021 275016    6                               1.05
 8.05 Term - 283406 283320   87  2  0  108   42   123 0.995   6.38
 8.04 Intr - 285991 285941   51  1  0   55  106    70 0.925   3.69
 8.03 Intr - 289253 289206   48  2  0   93  110    27 0.908   3.36
 8.02 Intr - 293869 293765  105  1  0   64   72   127 0.993   8.19
 8.01 Intr - 296174 296039  136  1  1   11   75   137 0.887   4.35

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  10272  10326   55  2  1  107   84    76 0.875  10.60
S.002 Term +  12081  12215  135  2  0   84   43   147 0.952   6.84
S.003 Term +  77480  77698  219  1  0  -13   42   204 0.824   1.76


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586r:79492610_79790244|GENSCAN_predicted_peptide_1|286_aa
MEKKAFAKSMAAYQLPGVLTHMITRPHNGLLLQAEEQGEPVRVPKLKNLESDARGQEASS
MGERYCAGSMIPASASVNNLKKLPIMEDGEGEHILHGMCNGINQGYNSTHTEWRKARQGD
HPLGSSVEQGEPTLSREVAWESLQAPETDTDSQHKATASQKSGQTVLHADPSPYFSSLSR
NLDVNLYGPGLFLVDTDSLAGMRDKIEFYKSTQEWKGNNPNHSPSSIEDELLCSYGKLPC
DFQRTKRRFRKFPERKGEEEEETEEEEEDKEDSEDEEKNVVTIQRI

>gi568815586r:79492610_79790244|GENSCAN_predicted_CDS_1|861_bp
atggagaaaaaggcatttgccaagtcaatggctgcatatcagttaccaggagtattaact
cacatgatcacaaggccccacaatggcttgctcctgcaggctgaggagcaaggagagcca
gtccgagttccaaaactgaagaatttggagtctgatgctcgagggcaggaagcatccagc
atgggagaaagatactgtgcaggaagcatgataccagcctctgcttctgttaacaacctc
aagaagcttccaatcatggaggacggggaaggggagcacatattacatggtatgtgcaat
gggattaatcaaggatacaactcaacccatacagaatggagaaaagcaaggcagggtgac
cacccacttgggagcagtgtggagcagggggaacctacactgtccagggaagtggcttgg
gagagtctgcaggcaccagagactgatacggactcccagcacaaagcaaccgcctctcag
aaaagtggccagactgttctccatgcagatcccagtccttacttctcctcactgagcagg
aatttggatgtgaatctgtatggtcctggactttttttggttgacacagattcactggct
gggatgagagataaaattgaattctataagtctacacaagaatggaaaggcaataatcca
aaccactctccaagttctattgaagatgagttgctttgcagttacggcaaattgccttgc
gattttcaaaggaccaagagaagattccgtaagtttccagagagaaagggagaggaagag
gaggagacggaggaggaggaagaggacaaagaggacagtgaggatgaggaaaagaatgtg
gtgaccatacaaagaatctga

>gi568815586r:79492610_79790244|GENSCAN_predicted_peptide_2|272_aa
MDAELQVTLTVEGRDTLTKLSASLTIPGLQLYLIAALLPNPKPPLCPPLVSPHLNPQVVF
METKGGEGQSREVDATVEGNRVKLQTFTVSVTALKAVRLELFVPLVWSCSFLPVRSSSCW
PPADLHAYVTNVHNVFGPQNHPDSSSTPERCEETSEKPKKKKKQKPQEVPQEKTEDPSIS
FSKPKKKKSFSKEELMSSDLEETAGSTSLLKRKKSSPKTETVNDPEEAGNRSVSKKKTKF
SKEEPVSSGPEEAAGSKSSSKKKMFHKEAQED

>gi568815586r:79492610_79790244|GENSCAN_predicted_CDS_2|819_bp
atggacgccgagcttcaggtaactctcacagtggaaggccgagacactttaactaaatta
tctgcttccctgactattcctggactacagctatatctcattgccgcccttctgcccaat
ccaaagcctcctttgtgtcctcctcttgtatccccccaccttaacccacaagtggttttc
atggagacaaaaggtggagaaggacagtcccgtgaagtggatgcaacagttgaaggtaac
agagtgaagctgcagaccttcacggtgagtgttacagctcttaaggcggtccgtctagag
ttgttcgttcctctcgtttggagttgttcattcctcccggtgcgttcatcgtcttgctgg
cctcctgcagaccttcacgcttatgtgacaaacgttcacaatgtttttggtcctcaaaat
caccctgacagcagtagtactccagagaggtgtgaggagacgagtgaaaaacccaaaaag
aagaaaaagcaaaagccccaggaggttcctcaggagaaaacagaagacccatctatctct
ttctccaaacccaagaaaaagaaatctttttccaaggaggagttgatgagtagtgatctt
gaagagactgctggcagcaccagtcttctcaagaggaagaagtcttcacccaagacggaa
acagttaatgaccccgaagaggcaggcaacagaagtgtctccaagaaaaagacgaaattc
tccaaagaggagcctgtcagcagtggacctgaagaggctgctggcagcaagagcagctcc
aagaagaaaatgttccataaagaagcccaggaagattag

>gi568815586r:79492610_79790244|GENSCAN_predicted_peptide_3|325_aa
MPPAFPTVGSCMARASPMGAAPCSAAPGPIDHPRAENCRHTAWDWQAAPPVALVRDPLGE
ASWARESANLVGTWKTFVSVSGIVNTLISTLSKRTNQLSVKQTNGLPVKWTNQQDSCLTL
TTKVCSFTPEPVRPRTHQKEEIPNTSEHQKEQTLDTLPLRTVTLAVRVHGFILEDWAMSW
MQSLPANPGCGHWGQLRPLQWQGVRAAATTNHVCSFTPEASETTNLPGGTNNSSHAALRA
VTLTVKVCSFTPEPARPRTHQKKETANTSEHQKERNPDTPPLRTVTLTARVRSFILEVSE
TKNPPIPDTLALKKQFESDGKRYST

>gi568815586r:79492610_79790244|GENSCAN_predicted_CDS_3|978_bp
atgccccctgctttccccaccgtgggctcctgcatggcccgagcctccccgatgggtgcc
gccccctgctccgcagcgcctggtcccatcgaccacccaagggctgagaattgcaggcac
acggcatgggactggcaggcagctccacccgtggccctggtgcgggatccactaggcgaa
gccagctgggctcgtgaatcagctaatctagtggggacgtggaaaacttttgtgtctgtc
tcagggattgtaaacacactaatcagcaccctgtcaaaacggaccaatcagctctctgta
aaacagaccaatgggctccctgtaaaatggaccaatcagcaggacagctgtttaacactc
accacgaaggtctgcagcttcactcctgagccagtgagaccacgaacccaccagaaggaa
gaaattccgaacacatccgaacatcaaaaggaacaaactctggacacgctgcctttaaga
actgtaacactcgccgtgagggtccacggcttcattcttgaagactgggccatgagttgg
atgcagtctctacctgccaacccaggctgtggccactggggccagcttcgccctctccag
tggcagggtgtcagggcagctgctaccactaatcatgtctgcagcttcactcctgaagcc
agtgagaccacgaacctgccgggaggaacgaacaactctagccatgccgccttaagagct
gtaacactcaccgtgaaggtctgcagcttcactcctgagccagcgagaccacgaacccac
cagaagaaagaaactgcaaacacatccgaacatcagaaggaacgaaatccggacacacca
cctttaagaactgtgacgctcaccgcgagggtccgcagcttcattcttgaagtcagtgag
acgaagaacccaccaattccggacacattagcactaaagaaacagtttgaaagtgatgga
aaaagatattctacataa

>gi568815586r:79492610_79790244|GENSCAN_predicted_peptide_4|398_aa
MGRAGRLGGGVSPLSSLLGAAIVGVRTVAPPAAVGAAAVPLLEVVSWHPRGRRKEEEAAA
GALVGGLSGLGGSTTDFLEEWKAKREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGTPA
AAAANELNNNLPGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPP
PQRDEEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAECLDEYEDDEA
GQKERKREDAITQQNTIQNEAVNLLDPGSSYLLQEPPRTVSGRYKSTTSVSEEDVSSRYS
RTDRSGFPRYNRDANVSGTLVSSSTLEKKIEDLEKEVVRERQENLRLVRLMQDKEEMIGK
LKEEIDLLNRDLDDIEDENEQLKQENKTLLKVVGQLTR

>gi568815586r:79492610_79790244|GENSCAN_predicted_CDS_4|1197_bp
atggggcgggcgggccgacttgggggtggggtcagtcctctctcctcccttctaggggcg
gcgatcgtcggggtccgtactgtagccccgccggctgctgtgggagcggcggccgtccct
ctcctggaggtcgtctcctggcatcctcggggccgcaggaaggaagaggaggcagcggcc
ggagccctggtgggcggcctgagcggcctcggcggcagcaccacagacttcctggaggag
tggaaggcgaaacgcgagaagatgcgcgccaagcagaaccccccgggcccggcccccccg
ggagggggcagcagcgacgccgctgggaagccccccgcgggggctctgggcaccccggcg
gccgccgctgccaacgagctcaacaacaacctcccgggcggcgcgccggccgcacctgcc
gtccccggtcccgggggcgtgaactgcgcggtcggctccgccatgctgacgcgggcggcc
cccggcccgcggcggtcggaggacgagcccccagccgcctctgcctcggctgcaccgccg
ccccagcgtgacgaggaggagccggacggcgtcccagagaagggcaagagctcgggcccc
agtgccaggaaaggcaaggggcagatcgagaagaggaagctgcgggagaagcggcgctcc
accggcgtggtcaacatccctgccgcagagtgcttagatgagtacgaagatgatgaagca
gggcagaaagagcggaaacgagaagatgcaattacacaacagaacactattcagaatgaa
gctgtaaacttactagatccaggcagttcctatctgctacaggagccacctagaacagtt
tcaggcagatataaaagcacaaccagtgtctctgaagaagatgtctcaagtagatattct
cgaacagatagaagtgggttccctagatataacagggatgcaaatgtttcaggtactctg
gtttcaagtagcacactggaaaagaaaattgaagatcttgaaaaggaagtagtaagagaa
agacaagaaaacctaagacttgtgagactgatgcaagataaagaggaaatgattggaaaa
ctcaaagaagaaattgatttattaaatagagacctagatgacatagaagatgaaaatgaa
cagctaaagcaggaaaataaaactcttttgaaagttgtgggtcagctgaccaggtag

>gi568815586r:79492610_79790244|GENSCAN_predicted_peptide_5|114_aa
MAEGEGETEYVLHGDRRQSEQEKLPVLKPSYRFWNWWVLGLTDFKNEAADPSAEGAGSGL
SQPRGGLSRSSGGLKGSLSGLKGSLSAARVGSEAKEAPRVSEGCKGSQHAVASQ

>gi568815586r:79492610_79790244|GENSCAN_predicted_CDS_5|345_bp
atggcagaaggtgaaggggaaacagagtacgtcttacatggagacaggagacagagtgag
caggaaaaactgccagttttaaaaccatcatatcgtttctggaattggtgggttcttggt
ctcactgacttcaagaatgaagccgcggaccctagcgccgagggagcgggctccggcctc
agccagcccagaggagggctctctcggtccagcggcgggctgaagggctccttaagcggg
ctgaagggctccttaagcgcggccagagtgggctccgaggccaaggaggcaccaagagtc
agcgagggctgcaagggcagccagcatgctgtcgcctctcaatag

>gi568815586r:79492610_79790244|GENSCAN_predicted_peptide_6|72_aa
MSIHQEDLAILDDYALYNKAAKYVKKKLIDQKEEIGKFMIIVVENTTPFSIMDRKTGQKI
SKDIEELNNSID

>gi568815586r:79492610_79790244|GENSCAN_predicted_CDS_6|219_bp
atgtcaattcaccaagaagacttagcaatcctagatgattatgcactctataacaaagct
gcaaaatatgtgaagaaaaaactgatagatcagaaagaagaaataggcaaattcatgatt
atagttgtggagaatacaacacccttctcaataatggatagaaaaactggacagaaaatc
agcaaagatatagaagaactcaacaacagcattgactga

>gi568815586r:79492610_79790244|GENSCAN_predicted_peptide_7|77_aa
MKSISEQGNRMCKRKCEEIREVVYGGKLKFSVFQMLTIQLTLSDPYFFSFFHNCVKSVAI
NSLFHNTHTGSASLIEL

>gi568815586r:79492610_79790244|GENSCAN_predicted_CDS_7|234_bp
atgaagagtatctcggaacaaggaaacagaatgtgcaaaaggaagtgtgaggaaatcaga
gaagttgtatatggcggaaagctgaagttctcagtcttccagatgcttacaatccagctc
accctttcagatccttacttcttcagtttcttccacaattgtgtcaaatctgttgctata
aattccttatttcataatactcacactggttctgcttccctgattgaactttaa

>gi568815586r:79492610_79790244|GENSCAN_predicted_peptide_8|142_aa
XYETSSTSAGDRYDSLLGRSGSYSYLEERKPYSSRLEKDDSTDFKKLYEQILAENEKLKA
QLHDTNMELTDLKLQLEKATQRQERFADRSLLEMEKRERRALERRISEMEEELKMLPDLK
ADNQRLKDENGALIRVISKLSK

>gi568815586r:79492610_79790244|GENSCAN_predicted_CDS_8|429_bp
nnatatgaaaccagttctacatcagctggtgatcgatatgattccttgctgggtcgctct
ggatcatacagttacttagaagaaagaaaaccttacagcagcaggctagaaaaggatgac
tcaactgactttaaaaagctttatgaacaaattctagctgaaaatgaaaagctgaaggca
cagctacatgatacaaatatggaactaacagatcttaaattacagttggaaaaggccacc
cagagacaagaaagatttgctgatagatcactgttggaaatggaaaaaagggaacgaaga
gctctagaaagaagaatatctgaaatggaagaagagctcaaaatgttaccagacctaaaa
gcagacaaccagaggctaaaggatgaaaatggggccttgatcagagttataagcaaactt
tccaaataa