GENSCAN 1.0	Date run: 19-Feb-121	Time: 20:39:11

Sequence gi568815586r:128694199_128923827 : 229629 bp : 46.01% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   1632   1905  274  0  1   48   91   345 0.990  28.34
 1.02 Intr +   3026   3217  192  1  0   91   91   248 0.995  25.09
 1.03 Term +  10892  12097 1206  1  0   94   47  1680 0.985 156.17
 1.04 PlyA +  12306  12311    6                               1.05

 2.05 PlyA -  12661  12656    6                               1.05
 2.04 Term -  20001  19851  151  2  1   51   49    90 0.506  -1.22
 2.03 Intr -  20318  20080  239  2  2  127   87    71 0.540   7.31
 2.02 Intr -  20570  20488   83  0  2   56   96    58 0.801   2.76
 2.01 Init -  24125  24011  115  2  1   86   73    24 0.337   1.08
 2.00 Prom -  28875  28836   40                              -1.66

 3.09 PlyA -  32322  32317    6                               1.05
 3.08 Term -  38070  37870  201  0  0   88   44    66 0.614  -0.41
 3.07 Intr -  50917  50854   64  0  1  126  110    14 0.869   6.12
 3.06 Intr -  53720  53529  192  1  0   97   54    89 0.056   5.01
 3.05 Intr -  82477  82309  169  2  1   48   16    99 0.105  -2.30
 3.04 Intr -  87228  87127  102  1  0   67   41    89 0.646   2.25
 3.03 Intr -  87464  87372   93  0  0   84   47    83 0.722   3.74
 3.02 Intr -  91254  91159   96  1  0   26   81    77 0.417   0.78
 3.01 Init -  93548  93494   55  2  1   46   99    69 0.776   5.25
 3.00 Prom - 101857 101818   40                              -3.46

 4.10 PlyA - 102400 102395    6                               1.05
 4.09 Term - 104922 104720  203  1  2  108   54    65 0.693   2.65
 4.08 Intr - 105219 105061  159  1  0  140   91    98 0.986  15.26
 4.07 Intr - 106811 106656  156  0  0   61   94   251 0.998  22.98
 4.06 Intr - 114758 114590  169  2  1  103  110   160 0.925  19.22
 4.05 Intr - 115830 115745   86  1  2   39   89    68 0.638   1.54
 4.04 Intr - 118563 118486   78  1  0   68   88    40 0.509   1.52
 4.03 Intr - 120118 119988  131  0  2   57   62    69 0.665   1.54
 4.02 Intr - 120872 120577  296  2  2   96   94   226 0.838  19.81
 4.01 Init - 129745 129200  546  1  0   44   99  1004 0.997  90.01
 4.00 Prom - 133102 133063   40                              -3.46

 5.00 Prom + 142354 142393   40                              -5.86
 5.01 Init + 144812 144907   96  1  0   56   75   110 0.904   6.81
 5.02 Intr + 149216 149329  114  1  0   73   60    86 0.957   4.94
 5.03 Intr + 151115 151252  138  1  0   57   58    77 0.549   2.26
 5.04 Intr + 151497 151700  204  2  0   85   33   111 0.504   4.70
 5.05 Term + 152261 152554  294  1  0   73   47   177 0.667   7.41
 5.06 PlyA + 154980 154985    6                               1.05

 6.00 Prom + 155757 155796   40                              -7.96
 6.01 Init + 159144 159451  308  2  2   65   86   317 0.273  23.97
 6.02 Intr + 169889 169981   93  2  0   60   93    48 0.005   1.58
 6.03 Intr + 181716 181864  149  0  2   46   84    76 0.071   2.88
 6.04 Intr + 194441 194546  106  0  1  103   90   110 0.818  11.97
 6.05 Intr + 220688 220791  104  2  2   53   85    24 0.025  -1.58
 6.06 Term + 223826 224091  266  0  2   52   41   157 0.072   3.07
 6.07 PlyA + 224275 224280    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586r:128694199_128923827|GENSCAN_predicted_peptide_1|557_aa
XPTRESEDEDEEERRGRGCALQYQHATVRVLTQFVSEGAGPWGQPNYLLSPNWQFDITHL
VADFMKLEEPHVATLQDSRVLVGREVGMTTIQVLSPLSDSILAEKTITVLDDKVSVTDLA
IQLVAGLSVALYPNAENSKAVTAVVTAEEVLRTPKQEAVFSTWLQFSDGSVTPLDIYDTK
DFSLAATSQDEAVVSVPQPRSPRWPVVVAEGEGQGPLIRVDMTIAEACQKSKRKSILAVG
VGNVRVKFGQNDADSSPGGDYEEDEIKNHASDRRQKGQHHERTGQDGHLYGSSPVEREEG
ALRRATTTARSLLDNKVVKNSRADGGRLAGEGQLQNIPIDFTNFPAHVDLPKAGSGLEEN
DLVQTPRGLSDLEIGMYALLGVFCLAILVFLINCATFALKYRHKQVPLEGQASMTHSHDW
VWLGNEAELLESMGDAPPPQDEHTTIIDRGPGACEESNHLLLNGGSHKHVQSQIHRSADS
GGRQGREQKQDPLHSPTSKRKKVKFTTFTTIPPDDSCPTVNSIVSSNDEDIKWVCQDVAV
GAPKELRNYLEKLKDKA

>gi568815586r:128694199_128923827|GENSCAN_predicted_CDS_1|1674_bp
nngcccactcgtgagagcgaggatgaggacgaggaggagcggcggggccggggctgcgca
ctgcaataccagcacgccaccgtgcgggtcctcacccagtttgtgtctgagggcgccggt
ccatggggccagccgaactacctgcttagtcctaactggcagttcgacatcactcacctg
gtggcagacttcatgaagctggaggaacctcacgtggccaccctccaggacagccgggtc
ctggttgggcgagaggttgggatgacgaccatccaggtgttgtctccactgtctgactcc
atcctggcagagaagacaataaccgtgctagatgacaaagtatcggtgacagacttggcc
atccagctcgtggctgggctgtctgtcgccctttaccccaacgcagaaaacagcaaggcc
gtaacagctgtggtcacagctgaggaggtgctgcggacccccaaacaggaggctgtattc
agcacgtggctgcagttcagtgatggctctgtgacgcccctggacatctacgacaccaag
gacttctccctggcagccacctcccaggacgaggctgtcgtgtcagtcccccagccccgc
tctcccaggtggcccgttgtggtggccgaaggggaaggccagggcccactgatccgagtg
gacatgacgatcgccgaggcctgccagaaatctaaacgcaagagcatcctggctgtgggc
gtcggcaacgtcagggtcaagttcggacagaacgatgctgactccagccccggcggggac
tatgaggaagatgagatcaagaaccacgccagcgaccgccggcagaagggccagcaccat
gagcgcacaggccaagatgggcacctctatggcagctctcccgtggagcgtgaggaaggg
gctctccgaagagccactaccacggccaggtccctgctggacaacaaagtggtgaagaac
agtcgggcagacgggggcaggctggcaggagaggggcagctgcagaacatccccattgac
ttcaccaacttccctgcccacgtggacctccccaaggccgggagtgggctggaggaaaac
gacctggtgcagactccgcggggcctgagtgatctggagatagggatgtacgccctcctg
ggggtgttctgcctggccatcctcgtcttcctgatcaactgcgccacctttgccctgaag
tacaggcacaagcaagtgcccctggaaggtcaggcctccatgacccactctcacgactgg
gtgtggcttggcaatgaggccgaactcctggagagcatgggggatgcgccgccgccccag
gacgagcacaccaccatcatagaccgcggaccgggggcctgcgaggagagcaaccatctc
ctgctcaatggtggctcccacaagcacgtgcagagccagattcacaggtcagccgactcc
ggggggcggcagggcagagaacagaagcaggaccccctgcactcgcccacctccaagagg
aagaaggtgaaatttaccacctttaccaccatccccccggacgacagctgccccacggtg
aactccatcgtcagcagcaatgatgaggacatcaaatgggtgtgtcaagacgtggctgtg
ggtgcccccaaggaacttagaaactatctggagaaactcaaagataaggcttag

>gi568815586r:128694199_128923827|GENSCAN_predicted_peptide_2|195_aa
MGERKKPGDPASKGIPPSSTCLVLVILATDWMVPTHIEEAKKSLGAHIVPGQLSTQEDAC
GPGQDQNNPGKAGWSGCSAEHHADQVYSWTTLIGSDEQEVARILSDLEYMLQRVRDDLCR
MFESCHVGKMMSGLRHVYAVETFPTRGSLAFLATLSWPYIERLNRLLAFSGTQSENKNVF
IKSRLQMNGLVTWAI

>gi568815586r:128694199_128923827|GENSCAN_predicted_CDS_2|588_bp
atgggagaaagaaagaagccaggagacccagcaagcaagggcatcccaccttcttccacc
tgccttgttctggtcatactggcaactgattggatggtgcccacacatattgaggaggcc
aagaagagcctgggagctcacattgtcccagggcagctctcaacccaggaggacgcatgt
ggccctggacaggaccagaataatccagggaaagctgggtggtctggatgttctgcagag
catcatgctgaccaagtgtattcatggaccacgttaattggatctgatgagcaggaagtg
gcaagaattttgagtgacctggaatacatgctccagagggtgagagacgacctctgcaga
atgttcgaatcctgccacgttggtaaaatgatgagtggtctaaggcacgtctacgctgtt
gaaactttccctacaagaggcagcctagctttcttggccacgctttcttggccgtatatt
gagagactcaacaggttgctagcttttagtgggactcagagtgaaaacaaaaatgtcttc
atcaagtccaggctgcagatgaatgggcttgtcacttgggccatttga

>gi568815586r:128694199_128923827|GENSCAN_predicted_peptide_3|323_aa
MLSQEKLIVNQQCLPHKAEYYWDGFNNRNRFFRVLGAAASKVKALADWMAGTSVGPCEFQ
EPAFPKLLAVLEEIFILSLGPGLLQDQISTDFVAYPTGIYAPCSGGQKSEITVLAGPQEE
GILTDPGVGRLRSVHSPSNASCWSLYKDPPFVSRFCSEYRTCQWRNLATTSSGQSPHVQT
PPPCAVAETLAVGEGPQPHRGEERELGPNVNVEAGQQVAKNRQQAGIRARRLSLTGSLRV
EFLMSWNQKSPDSYRNQGLWGIKTPTTDCTGPCDKWPSNSEKSLGRKRRGREHWSCTESR
LDEAVPCRTALQLQLLPEAGEGP

>gi568815586r:128694199_128923827|GENSCAN_predicted_CDS_3|972_bp
atgttgtcacaggagaagctcatcgtcaatcaacaatgccttcctcacaaagctgaatat
tattgggacggcttcaacaacaggaatagattcttcagagtcctgggggctgcggcgtcc
aaggtcaaggcactggctgattggatggctgggactagtgttggcccctgtgagttccag
gagccggcgtttccaaagctgcttgctgtgctggaggagattttcatcctgagccttgga
ccagggctgctgcaggaccagatttccactgacttcgtggcttacccaactggaatttat
gctccctgttctggaggccagaaatctgaaatcacagtattggcagggcctcaggaagag
gggatcctcactgaccctggagtggggcggctgaggtcagtccacagcccctccaatgcc
agctgctggagcctgtacaaagacccccctttcgtctcccgattctgcagcgagtatagg
acctgccagtggcgcaacctggcaaccacctcttcgggtcagagcccacatgtccagact
cccccaccctgtgctgttgctgagacactggccgtcggggaagggccccagcctcacaga
ggagaggagcgggaactaggccccaatgtcaatgtggaggctggccagcaagttgccaaa
aatagacaacaagctggaatcagagcaaggcgtttgtcactcacagggtcacttcgagtt
gaatttcttatgtcttggaaccaaaagagtcccgactcatatagaaatcagggcctctgg
ggcatcaagacccccactacagattgcactggtccttgtgataagtggccttctaactca
gagaagtctcttggaaggaagaggagaggcagggagcactggagctgcacagagtcaagg
ctggatgaggctgtgccgtgcagaactgccctgcagctgcagctgcttccagaggcaggc
gagggcccctga

>gi568815586r:128694199_128923827|GENSCAN_predicted_peptide_4|607_aa
MEGSGGGAGERAPLLGARRAAAAAAAAGAFAGRRAACGAVLLTELLERAAFYGITSNLVL
FLNGAPFCWEGAQASEALLLFMGLTYLGSPFGGWLADARLGRARAILLSLALYLLGMLAF
PLLAAPATRAALCGSARLLNCTAPGPDAAARCCSPATFAGLVLVGLGVATVKANITPFGA
DQVKDRGPEATRRFFNWFYWSINLGAILSLGGIAYIQQNVSFVTGYAIPTVCVGLAFVVF
LCGQSVFITKPPDGSAFTDMFKILTYSCCSQKRSGERQSNGSAWAPSYSGQVHHTAVRSI
IQRSGPSYGGQVHHTAVRSIIRRSAEMDSSHGLTVGPEHSDVCKALSRMPEEKVEDVKAL
VKIVPVFLALIPYWTVYFQLPAAWLTMFDAVLILLLIPLKDKLVDPILRRHGLLPSSLKR
IAVGMFFVMCSAFAAGILESKRLNLVKEKTINQTIGNVVYHAADLSLWWQVPQYLLIGIS
EIFASIAGLEFAYSAAPKSMQSAIMGLFFFFSGVGSFVGSGLLALVSIKAIGWMSSHTDF
ALLCAACITVFPYIMNGFQETSRPLFSSQGPSLPWPQPSEQLLQPPLLTGTSLTDKHLLH
ARPAQSS

>gi568815586r:128694199_128923827|GENSCAN_predicted_CDS_4|1824_bp
atggagggctctgggggcggtgcgggcgagcgggcgccgctgctgggcgcgcggcgggcg
gcggcggccgcggcggcggctggggcgttcgcgggccggcgcgcggcgtgcggggccgtg
ctgctgacggagctgctggagcgcgccgctttctacggcatcacgtccaacctggtgcta
ttcctgaacggggcgccgttctgctgggagggcgcgcaggccagcgaggcgctgctgctc
ttcatgggcctcacctacctgggctcgccgttcggaggctggctggccgacgcgcggctg
ggccgggcgcgcgccatcctgctgagcctggcgctctacctgctgggcatgctggccttc
ccgctgctggccgcgcccgccacgcgagccgcgctctgcggttccgcgcgcctgctcaac
tgcacggcgcctggtcccgacgccgccgcccgctgctgctcaccggccaccttcgcgggg
ctggtgctggtgggcctgggcgtggccaccgtcaaggccaacatcacgcccttcggcgcc
gaccaggttaaagatcgaggtccggaagccactaggagattttttaattggttttattgg
agcattaacctgggagcgatcctgtcgttaggtggcattgcctatattcagcagaacgtc
agctttgtcactggttatgcgatccccactgtctgcgtcggccttgcttttgtggtcttc
ctctgtggccagagcgttttcatcaccaagcctcctgatggcagtgccttcaccgacatg
ttcaagatactgacgtattcctgctgttcccagaagcgaagtggagagcgccagagtaat
gggtcagcatgggctccatcatacagcggtcaggtccatcatacggcggtcaggtccatc
atacagcggtcaggtccatcatacggcggtcaggtccatcatacggcggtcaggtccatc
atacggcggtcagcggagatggattcatctcatgggctcacggtggggcctgagcacagt
gatgtgtgcaaggccctcagcaggatgccagaagagaaagtggaagatgtgaaagctctg
gtcaagattgtccctgttttcttggctttgataccttactggacagtgtatttccaactc
cctgcagcctggctgaccatgtttgatgctgtgctcatcctcctgctcatccctctgaag
gacaaactggtcgatcccattttgagaagacatggcctgctcccatcctccctgaagagg
atcgccgtgggcatgttctttgtcatgtgctcggcctttgctgcaggaattttggagagt
aaaaggctgaaccttgttaaagagaaaaccattaatcagaccatcggcaacgtcgtctac
catgctgccgatctgtcgctgtggtggcaggtgccgcagtacttgctgattgggatcagc
gagatctttgcaagtatcgcaggcctggaatttgcatactcagctgcccccaagtccatg
cagagtgccataatgggcttgttctttttcttctctggcgtcgggtcgttcgtgggttct
ggactgctggcactggtgtctatcaaagccatcggatggatgagcagtcacacagacttt
gcactgctctgtgctgcttgcatcactgtgtttccttacatcatgaacggttttcaggag
acaagcaggcctctcttctcatcccaggggccaagcctgccctggccacagcccagcgag
cagctgctgcagccaccgctccttacggggacgtccttgacagacaagcaccttctccac
gcccgtccagctcagtcttcgtga

>gi568815586r:128694199_128923827|GENSCAN_predicted_peptide_5|281_aa
MAKTYNNKAEIKSVLVYAYTGMLRRYSNDTAEHLPEGRNTVSSIAEEVEGMSSPPKTFEG
MNAASSIAEESRRKGHSADTVSPDVCLPEPEEGPLCDTASPEVCPPEPEEGPLCDTSRRK
GPSVTPRARTSVLQSRRKGHSADTGIPDVCPPEAEEGPLCDTAIPDVCPPEAEEGPLCDT
TSPDSRRKGPSADTASPDVCPPEPEEGPLCDTASPDVCPPEPEEGPLCDTASPDVCPPEP
EEGPLCDTASPDVCPPEPEEGPLCDTVSRTSVLRSRRKGHL

>gi568815586r:128694199_128923827|GENSCAN_predicted_CDS_5|846_bp
atggcaaagacgtacaacaacaaggcagagatcaaatcagttctagtgtatgcatatact
ggaatgctacgtcgttattcaaatgatactgcagagcatcttccagaggggaggaacact
gtgtcctccatagcagaggaggtagaaggaatgagctcacccccgaagacctttgagggg
atgaacgctgcatcctccatagcagaggagagccggaggaagggccactctgctgacacc
gtgagcccggacgtctgtcttccagagccggaggaagggccactctgtgacaccgcgagc
ccggaagtctgtcctccagagccggaggaagggccactctgtgacaccagccggaggaag
ggcccctctgtgacaccgcgagcccggacgtctgtcctccagagccggaggaagggccac
tctgctgacaccgggatcccggacgtctgtcctccagaggcggaggaagggccactctgt
gacaccgcgatcccggacgtctgtcctccagaggcagaggaagggccactctgtgacacc
acgagcccggacagccggaggaagggaccctctgctgacaccgcgagcccggacgtctgt
cctccagagccggaggaagggccactctgtgacaccgcgagcccggacgtctgtcctcca
gagccggaggaagggcccctctgtgacaccgcgagcccggacgtctgtcctccagagccg
gaggaagggcccctctgtgacaccgcgagcccggacgtctgtcctccagagccggaggaa
gggccactctgtgacaccgtgagccggacgtctgtcctccggagccggaggaagggccac
ttgtga

>gi568815586r:128694199_128923827|GENSCAN_predicted_peptide_6|341_aa
MDPTGHTRATPHPGLAPPEAPGSCPPPRLAPEPASWGAASGRGGRDRPSRPGSPAVRVCA
GPGAWSAAAGPVDGPGGGGGMRLLFLAVLRPHTGNAVTAQRVRSLHVECWLMPARLGQES
LNMLTARCLSDDTLAHLEAAGHVCVLKDAFDFESRSEIANLILAENCEAALALHLYRGGR
LLQGHRIPFGVIFGGTDVNEDANQAEKNTVMGRVLEEASSRFKVNLPFFCFFDPGIATTP
NAAFNWNTFLQRSALFTIAKTWNQPKCPSVIDWIKKMWYIDTVEYYAAIKTNKIMSFAGT
WMKLEAVILSKLRQEQKTKHRMFSTYKWELNNENMWTQGGE

>gi568815586r:128694199_128923827|GENSCAN_predicted_CDS_6|1026_bp
atggaccccacggggcacacccgcgccaccccgcacccagggctcgcgccgcccgaggcc
cccggttcctgtccccctccccgcctggcgccggaacctgcgagctggggcgcggcctcg
gggaggggcgggcgggacagacccagccgccccggctcccccgccgtccgcgtctgcgcc
ggccccggggcctggtcggcggcggcggggccggtcgatggcccgggcggcggcggcggc
atgcggctcctgttcctggcggtgctgcggccacacaccggcaacgcggtcacggcccag
cgcgttcggtccctgcacgtggaatgctggctgatgccagctcggctggggcaggagagt
cttaacatgctgactgcgaggtgcctgtcagacgacacactggcccatctagaggctgca
gggcacgtgtgcgttttgaaggatgcctttgactttgaaagccgatctgagattgcaaac
ctcatcttggctgagaactgcgaggctgccctggctcttcatctctataggggaggcagg
cttttgcaaggccaccgaatcccttttggagtcatctttggtggaactgatgtaaatgaa
gatgccaaccaggcggaaaaaaacacagtcatgggcagagttcttgaggaagccagcagt
cgcttcaaagtgaacttgccctttttttgtttctttgacccaggaattgcaacaacacca
aacgccgcttttaactggaatacctttcttcaacgctctgcactattcacaatagcaaag
acatggaatcaacccaaatgcccatcagtgatagactggataaagaaaatgtggtacata
gacaccgtggaatactatgcagccataaaaacgaacaagatcatgtcctttgcaggaaca
tggatgaagctggaagccgttatcctcagcaaactaaggcaggaacagaaaaccaaacac
cgcatgttctcaacttataagtgggagctgaacaatgagaacatgtggacacagggaggg
gaataa