GENSCAN 1.0	Date run:  5-Nov-116	Time: 17:34:21

Sequence gi568815586r:12230030_12443314 : 213285 bp : 42.80% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.04 PlyA -     20     15    6                               1.05
 1.03 Term -  10837  10716  122  2  2   54   49   136 0.435   3.96
 1.02 Intr -  14626  14237  390  2  0  109   39   437 0.393  34.67
 1.01 Init -  21831  21825    7  0  1   74   80     0 0.249  -0.94
 1.00 Prom -  24909  24870   40                              -4.95

 2.06 PlyA -  25858  25853    6                               1.05
 2.05 Term -  37089  36978  112  2  1   81   55   208 0.595  13.85
 2.04 Intr -  37557  37306  252  2  0   40    0   223 0.405   4.33
 2.03 Intr -  45076  45032   45  0  0  128   74    11 0.108   0.31
 2.02 Intr -  50361  50238  124  1  1   45   76   118 0.825   5.02
 2.01 Init -  54783  54768   16  0  1   65   99    12 0.254   0.59
 2.00 Prom -  59418  59379   40                              -6.05

 3.00 Prom +  66219  66258   40                              -1.65
 3.01 Init +  67777  67822   46  0  1   62   92     8 0.399  -0.50
 3.02 Intr +  70925  71153  229  0  1   59   57   167 0.731   6.71
 3.03 Term +  75628  75835  208  1  1   62   48   127 0.340   1.93
 3.04 PlyA +  78824  78829    6                               1.05

 4.07 PlyA -  78865  78860    6                               1.05
 4.06 Term - 100929  99998  932  1  2   68   49   532 0.895  38.61
 4.05 Intr - 108531 108391  141  1  0   73   95   110 0.094   9.60
 4.04 Intr - 120345 120049  297  1  0    8  103   186 0.240   8.02
 4.03 Intr - 121195 121077  119  0  2   35   72    67 0.286  -1.01
 4.02 Intr - 124070 123891  180  1  0   83   80    69 0.119   3.66
 4.01 Init - 152233 152133  101  1  2   61   48   137 0.501   6.78
 4.00 Prom - 153064 153025   40                              -5.85

 5.04 PlyA - 153934 153929    6                               1.05
 5.03 Term - 173476 173312  165  1  0   87   36   122 0.283   3.83
 5.02 Intr - 177166 176936  231  1  0  103    7   126 0.161   3.05
 5.01 Init - 183695 183648   48  2  0   79   78    56 0.016   2.72
 5.00 Prom - 189500 189461   40                              -3.65

 6.02 PlyA - 189784 189779    6                              -0.45
 6.01 Sngl - 190093 189803  291  1  0   71   43   179 0.887   7.10
 6.00 Prom - 190147 190108   40                              -5.65

 7.02 PlyA - 190264 190259    6                               1.05
 7.01 Sngl - 191458 190805  654  1  0   43   48   333 0.991  20.72
 7.00 Prom - 193279 193240   40                              -3.45

 8.02 PlyA - 193312 193307    6                               1.05
 8.01 Term - 199848 199683  166  2  1   58   54   162 0.051   6.21

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl - 183695 183513  183  2  0   79   43   173 0.838   4.70


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586r:12230030_12443314|GENSCAN_predicted_peptide_1|172_aa
MGAAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIK
RTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQE
LDQPRAIALDPSMSRGDSYVAAPNAGAPQSDSTVTMLSNRTNLGDVEDLCQV

>gi568815586r:12230030_12443314|GENSCAN_predicted_CDS_1|519_bp
atgggagcggcccctttgttgctttatgcaaacagacgggacttgcgattggttgatgct
acaaatggcaaagagaatgctacgattgtagttggaggcttggaggatgcagctgcggtg
gactttgtgtttagtcatggcttgatatactggagtgatgtcagcgaagaagccattaaa
cgaacagaatttaacaaaactgagagtgtgcagaatgttgttgtttctggattattgtcc
cccgatgggctggcatgtgattggcttggagaaaaattgtactggacagattctgaaact
aatcggattgaagtttctaatttagatggatctttacgaaaagttttattttggcaagag
ttggatcaacccagagctattgccttagatccttcaatgagtagaggtgattcctatgtg
gctgctcctaatgctggagcccctcagtctgattccacagttaccatgctaagcaaccgt
actaatcttggtgatgttgaggacctgtgtcaagtttaa

>gi568815586r:12230030_12443314|GENSCAN_predicted_peptide_2|182_aa
MKMTGVQYHKPLNNILEPMQSATSDAGSAPKKQKKVMTLQEKSGIAWLPSIADILSSCLG
QTSTLKAGVNSVQKFRPPKKRMLKPISNPEDGAHHPATGSAVAPRACTAAGQSQVAGGAR
PEPHLALPAAAAQRAGQTAARPSRRKRQYREKGLVARRDTVAATLGGGADRIPAPLREAE
AE

>gi568815586r:12230030_12443314|GENSCAN_predicted_CDS_2|549_bp
atgaagatgactggagtgcaataccataaacccttgaataacatcctggaacccatgcaa
agtgccactagtgatgctggaagtgctcccaagaagcagaaaaaagtcatgaccttacaa
gaaaaaagtggaattgcttggttaccctctattgcagatatcctttcatcctgtttggga
caaacatccacgctgaaagccggtgtaaacagcgttcaaaaattccgccctcccaaaaaa
aggatgctgaaaccgatttccaaccccgaagacggagctcatcaccccgcaacgggatcc
gccgtggctccccgcgcgtgcaccgcggctgggcagtctcaggtggctgggggcgcgaga
ccggagccccacctggccctgccggcggcggccgcacaaagagcggggcagacggctgcc
cggccgagccgcagaaagaggcagtaccgggagaaggggctcgttgcgcgcagggacacg
gtcgcggcgaccctaggaggcggtgccgaccgtatccctgcgccgctgcgcgaggcagag
gctgaatga

>gi568815586r:12230030_12443314|GENSCAN_predicted_peptide_3|160_aa
MQTSRGPILQAEGAAGVSGTRYYHLTPQVVWERQQQKVDSLLGTQQMLEAQGREFQGPAS
PYLSPQMHQLLRPHLSLLHRTSNPPTISSCGWSLCYHSSASTEINTPVGNGMSLMLVGQG
RSLNAGGTTTLAGVQALDTITRRNSRMSQKIVKVWRFIAK

>gi568815586r:12230030_12443314|GENSCAN_predicted_CDS_3|483_bp
atgcaaacatccaggggaccaatactccaagctgagggagcggcaggtgtgtctggaact
cggtactaccaccttactccccaggtggtctgggagaggcagcaacagaaagtagacagt
ttattagggacccagcagatgctggaagcccagggaagggagtttcagggccctgcatcc
ccctacctgtccccacaaatgcaccagctgctaagaccacacctcagcctccttcaccgg
acctctaaccccccaactatctcttcctgtggttggtctctttgttaccatagttcggcc
tctaccgaaattaatacaccagtggggaatgggatgagcttgatgctagtgggccaggga
aggtccctaaacgctggtgggaccacaaccctggctggtgtccaggctcttgacaccatc
acaagaaggaattcaagaatgagtcagaaaatagtgaaagtgtggagatttattgcaaaa
tga

>gi568815586r:12230030_12443314|GENSCAN_predicted_peptide_4|589_aa
MPAPPSPSSMIESFLRSLPEADAGATLLIQLAELLPSQKPAYCQHCIQPIVVSWRASPLN
FSSICMPISGPYHFRFLEERPLASRPSIHPSCGSYWLRLGCVAVGRTGLDLTCNCIALQV
CKLFQNRGEDTVKALGPGARSLRGEGRANVAGKQLRVAGQERALPPRQTCRRCDGSRNLL
TTKPARPVRELRSIRCGPRRDPRADSPVLPAGATELSSHLDGSRGAGVLSTPGDKACNLM
IFDTRKTARQPNCYLFFCPNEEACPLKPAKGLMSYRIITDFPSLTRNLPSQELPQEDSLL
HGQFSQAVTPLAHHHTDYSKPTDISWRDTLSQKFGSSDHLEKLFKMDEASAQLLAYKEKG
HSQSSQFSSDQEIAHLLPENVSALPATVAVASPHTTSATPKPATLLPTNASVTPSGTSQP
QLATTAPPVTTVTSQPPTTLISTVFTRAAATLQAMATTAVLTTTFQAPTDSKGSLETIPF
TEISNLTLNTGNVYNPTALSMSNVESSTMNKTASWEGREASPGSSSQGSVPENQYGLPFE
KWLLIGSLLFGVLFLVIGLVLLGRILSESLRRKRYSRLDYLINGIYVDI

>gi568815586r:12230030_12443314|GENSCAN_predicted_CDS_4|1770_bp
atgcctgctcctccttcaccttcctccatgattgaaagttttctgaggtccttaccagaa
gcagatgctggtgccacacttcttatacagcttgcagaactgctcccaagccagaagcct
gcttactgtcagcactgcatccaaccaatcgttgtgtcctggagagcctctcctcttaat
ttctcctctatctgcatgcccatttcagggccttatcacttccgtttcttggaagagagg
cctctggcctcacgtccctcaatccatccctcctgtggcagttattggttaagactaggg
tgtgtagctgttggccgtacaggcctagacttaacttgcaattgcatagcgcttcaggtc
tgcaagctctttcaaaacagaggtgaagatactgtcaaagcgctggggccgggagcccgg
agcctccgcggggagggacgcgctaatgttgccgggaagcagctccgggttgcagggcag
gaacgtgcccttcccccgcggcaaacttgccgtcgctgcgacggaagcaggaacttgcta
accacaaaacccgccaggccggtgcgggagctgcggagcatccgctgcggtcctcgccga
gacccccgcgcggattcgccggtccttcccgcgggcgcgacagagctgtcctcgcacctg
gatggcagcaggggcgccggggtcctctcgacgccaggggacaaagcatgtaacttgatg
atcttcgacactcgaaaaacagctagacaacccaactgctacctatttttctgtcccaac
gaggaagcctgtccattgaaaccagcaaaaggacttatgagttacaggataattacagat
tttccatctttgaccagaaatttgccaagccaagagttaccccaggaagattctctctta
catggccaattttcacaagcagtcactcccctagcccatcatcacacagattattcaaag
cccaccgatatctcatggagagacacactttctcagaagtttggatcctcagatcacttg
gagaaactatttaagatggatgaagcaagtgcccagctccttgcttataaggaaaaaggc
cattctcagagttcacaattttcctctgatcaagaaatagctcatctgctgcctgaaaat
gtgagtgcgctcccagctacggtggcagttgcttctccacataccacctcggctactcca
aagcccgccacccttctacccaccaatgcttcagtgacaccttctgggacttcccagcca
cagctggccaccacagctccacctgtaaccactgtcacttctcagcctcccacgaccctc
atttctacagtttttacacgggctgcggctacactccaagcaatggctacaacagcagtt
ctgactaccacctttcaggcacctacggactcgaaaggcagcttagaaaccataccgttt
acagaaatctccaacctaactttgaacacagggaatgtgtataaccctactgcactttct
atgtcaaatgtggagtcttccactatgaataaaactgcttcctgggaaggtagggaggcc
agtccaggcagttcctcccagggcagtgttccagaaaatcagtacggccttccatttgaa
aaatggcttcttatcgggtccctgctctttggtgtcctgttcctggtgataggcctcgtc
ctcctgggtagaatcctctcggaatcactccgcaggaaacgttactcaagactggattat
ttgatcaatgggatctatgtggacatctaa

>gi568815586r:12230030_12443314|GENSCAN_predicted_peptide_5|147_aa
MVGGSAPRPASRPIREDQDYFKIICKKEYIQSEKALTLTVKINITNIHNSDEKIFQQLSL
SEGRKPTLSHLPGRMNAILEEQATWVPPTLQQLFPQKQEGAPHSGLGRYGAITERKSLVC
PSHGEEQLGLPQKSQQKQQTSNSETAK

>gi568815586r:12230030_12443314|GENSCAN_predicted_CDS_5|444_bp
atggtgggggggtcagccccccgcccggccagccgccccatccgggaggatcaggactac
ttcaaaattatttgcaaaaaggaatatattcaaagtgagaaggccctcactcttactgtg
aaaataaacattacaaacattcacaattcagatgagaaaatctttcaacagctctcactg
agtgaaggcagaaagcccactttgtcccacttgcctggaagaatgaatgccatcctggaa
gaacaggccacttgggtgccccccacacttcagcagctgtttcctcagaagcaggaaggt
gccccccacagcggactagggagatatggggcaatcacagaaaggaaatccttggtgtgc
ccaagccacggggaagagcagctgggattgccacagaaaagccagcagaagcaacagacc
tctaacagtgaaacagccaaataa

>gi568815586r:12230030_12443314|GENSCAN_predicted_peptide_6|96_aa
MGKDFMSKTPKAMATKAKIDKWDLIKLKSFCTAKETTIRVNRQPTEWEKIFAIYPSDKEL
MSKIYKEFKQIYKKKTNNPINKWAKDMNRHSSKEDI

>gi568815586r:12230030_12443314|GENSCAN_predicted_CDS_6|291_bp
atgggcaaggacttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgac
aaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactaccatcagagtg
aacaggcaacctacagaatgggagaaaatttttgcaatctatccatcagacaaagagcta
atgtccaaaatctacaaagaattcaaacaaatttacaagaaaaaaacaaacaaccccatc
aacaagtgggcaaaagatatgaacagacactcctcaaaagaagacatctaa

>gi568815586r:12230030_12443314|GENSCAN_predicted_peptide_7|217_aa
MNIDAKILNKILANRIQEHIKKLTYHDQVGFIPGMQGWFNIHKSINVIHHINRTDHKKHM
IISIDAEKAFNKIQQRFMLKTLNKLGIDGTYLKIIRAINDKPTASIIPNGQKLEAFPLKI
GTRQECSLSPLLFNTVLEVLARAIRQEKEIKDIQLGNEEVKLSLFADDMIVYLENSIISA
PNLLKLISNFSKVSGYKISVQKSQSFLYTNNRQTAKL

>gi568815586r:12230030_12443314|GENSCAN_predicted_CDS_7|654_bp
atgaacatcgatgcgaaaatcctcaataaaatactggcaaaccgaatccaggagcacatc
aaaaagcttacctaccacgatcaagtcggcttcatccctgggatgcaaggctggttcaac
atacacaaatcaataaacgtaatccatcacataaacagaaccgaccacaaaaaacacatg
attatctcaatagatgcagaaaaggccttcaacaaaattcaacagcgcttcatgctaaaa
actctcaataaactgggtattgatggaacgtatctcaaaataataagagctattaatgac
aaacccacagccagtatcataccgaatgggcaaaaactggaagcattccctttgaaaatc
ggcacaagacaagaatgctccctctcaccactcctattcaacacagtgttggaagttctg
gccagggcaatcaggcaagaaaaagaaataaaggatattcaattaggaaatgaggaagtc
aaattgtccctgtttgcagatgacatgattgtatatttagaaaactccatcatctcagcc
ccaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcagtgtg
caaaaatcacaatcattcctatacaccaataacagacaaacagccaaattatga

>gi568815586r:12230030_12443314|GENSCAN_predicted_peptide_8|55_aa
XCMRKLSGASEDYWEPESQNEVEEGYRASPSCQVAEAEGPEPNLSSQNKTLTSTS

>gi568815586r:12230030_12443314|GENSCAN_predicted_CDS_8|168_bp
nngtgcatgaggaagctctccggtgcttcagaagactattgggagcctgaatcgcagaat
gaagtggaggaaggctacagggccagcccaagctgccaggtggctgaagcagagggccca
gaacccaaccttagctcacaaaacaaaactctcacttctacctcttga