GENSCAN 1.0	Date run:  6-Nov-116	Time: 08:29:59

Sequence gi568815586r:117934199_118152480 : 218282 bp : 46.04% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   1277   1331   55  1  1   55   90    53 0.531   1.65
 1.02 Term +   3925   4025  101  2  2   90   45    65 0.595   0.69
 1.03 PlyA +   4108   4113    6                               1.05

 2.04 PlyA -   6105   6100    6                               1.05
 2.03 Term -  10361  10347   15  2  0  112   50     4 0.051  -2.76
 2.02 Intr -  23090  22980  111  2  0  104   62    32 0.175   2.78
 2.01 Init -  34057  33878  180  1  0   70   92   209 0.597  18.68
 2.00 Prom -  34192  34153   40                             -16.85

 3.04 PlyA -  34251  34246    6                               1.05
 3.03 Term -  34783  34614  170  2  2   80   42   220 0.147  14.64
 3.02 Intr -  44470  44234  237  2  0   50   57   105 0.020   1.19
 3.01 Init -  53230  53140   91  1  1   85   84   103 0.980  10.25
 3.00 Prom -  58925  58886   40                              -2.56

 4.00 Prom +  74050  74089   40                              -3.76
 4.01 Init +  82630  82694   65  0  2  110   62    53 0.982   5.54
 4.02 Intr +  82812  82956  145  0  1  125   21    52 0.893   2.48
 4.03 Intr +  83797  83855   59  0  2  101  103    25 0.941   2.98
 4.04 Intr +  84874  84938   65  1  2   65  100    37 0.976   0.96
 4.05 Intr +  85434  85570  137  1  2   71   84    87 0.932   6.89
 4.06 Intr +  86708  86787   80  1  2   53   60    86 0.928   0.65
 4.07 Intr +  88088  88161   74  2  2   59   99    98 0.920   7.05
 4.08 Intr +  89445  89564  120  1  0   36   67    73 0.552   0.47
 4.09 Intr +  90653  90812  160  0  1   63   81    59 0.946   1.75
 4.10 Intr +  91549  91630   82  1  1   99   80    33 0.990   3.24
 4.11 Term +  92691  92858  168  2  0  101   49   214 0.867  16.68
 4.12 PlyA +  93588  93593    6                               1.05

 5.16 PlyA -  94388  94383    6                               1.05
 5.15 Term - 100160  99998  163  1  1   90   47    87 0.990   2.21
 5.14 Intr - 101126 101016  111  1  0  102   97    67 0.995   8.49
 5.13 Intr - 102312 102140  173  0  2  111   72    90 0.674   8.44
 5.12 Intr - 104190 104090  101  1  2  107  109    36 0.968   7.43
 5.11 Intr - 108774 108643  132  1  0   95   68    94 0.989   8.72
 5.10 Intr - 109179 108935  245  2  2   45   96   131 0.559   6.74
 5.09 Intr - 118280 118112  169  0  1   65   81   116 0.433   7.60
 5.08 Intr - 134399 134179  221  1  2   32  121   301 0.177  25.75
 5.07 Intr - 136869 136854   16  1  1   83  109     0 0.177  -3.80
 5.06 Intr - 137271 137161  111  1  0   50  116    26 0.715   1.95
 5.05 Intr - 139794 139501  294  1  0   59  113   263 0.704  22.88
 5.04 Intr - 145408 145148  261  2  0  118   70   118 0.613  10.46
 5.03 Intr - 148231 147929  303  2  0  116   36   409 0.644  35.06
 5.02 Intr - 161616 161335  282  1  0   63  100   222 0.960  18.29
 5.01 Init - 169473 169395   79  0  1  103   82   163 0.991  16.45
 5.00 Prom - 170927 170888   40                              -6.76

 6.00 Prom + 180920 180959   40                              -2.16
 6.01 Init + 189881 189929   49  1  1   96   89    40 0.495   4.01
 6.02 Term + 194278 194894  617  2  2   66   48   126 0.417   1.03
 6.03 PlyA + 195033 195038    6                              -0.45

 7.00 Prom + 195301 195340   40                              -2.36
 7.01 Init + 202012 202146  135  0  0   95   86   278 0.997  28.44
 7.02 Intr + 203841 203950  110  2  2   72   94    29 0.951   0.98
 7.03 Intr + 205253 205353  101  2  2   91   92   137 0.994  14.15
 7.04 Term + 210388 210605  218  2  2  118   50   324 0.998  28.91
 7.05 PlyA + 211363 211368    6                               1.05

 8.03 PlyA - 215621 215616    6                               1.05
 8.02 Term - 216960 216799  162  0  0   69   50   148 0.994   7.04
 8.01 Intr - 218211 218029  183  0  0  106  116   226 0.999  27.18

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl -  34778  34614  165  2  0   87   42   280 0.847  16.01


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586r:117934199_118152480|GENSCAN_predicted_peptide_1|51_aa
MGRAWWFMPVIPALLGGRANAVILQVFALASRHQIHDVKACILCPSTQHGA

>gi568815586r:117934199_118152480|GENSCAN_predicted_CDS_1|156_bp
atgggccgggcatggtggttcatgcctgtaatcccagcacttttgggaggccgagctaat
gctgtcatccttcaggtcttcgctttagcatcacgtcaccagatccacgacgtgaaggca
tgtattctgtgtcccagtacccagcacggtgcctga

>gi568815586r:117934199_118152480|GENSCAN_predicted_peptide_2|101_aa
MDEENMTKSEEQQPLSLQKALQQCELVQNMIDLSISNLEGLRTKCATSNDLTQKEIRTLE
AGLLRFRVTNLTQTDRVRQPQTQEQTEVYCSPVDSPKDFTN

>gi568815586r:117934199_118152480|GENSCAN_predicted_CDS_2|306_bp
atggatgaggaaaacatgacgaaaagcgaggagcagcagcctctgagtttgcaaaaagcc
ttacagcagtgcgaactggtccaaaacatgatagacttgagcatctccaacctggaaggg
cttaggaccaaatgtgctacctccaacgacctcacacaaaaagaaatccggaccctggag
gcaggtttattgaggtttagagtcaccaatttgacccaaactgaccgagtaaggcagccg
cagacacaggaacagacagaggtttactgctctcctgtggactccccaaaggattttaca
aactga

>gi568815586r:117934199_118152480|GENSCAN_predicted_peptide_3|165_aa
MAKKEGEYGKLFEICPNDKKVTMEAFKNDNRQCKLIVQFMLELMGDCIPDRVAQHSAVIL
VTSRKKPPKNDANNKIVLRDADRKETYLSRVRVIFKLLDYVSYFLLPKLGKMSVWSEAGA
IAATVTPGARRRQQQQQQQRGEETAASRSSRRSRGSNADSTLRTR

>gi568815586r:117934199_118152480|GENSCAN_predicted_CDS_3|498_bp
atggccaagaaggagggcgaatatgggaagttgtttgaaatatgtccaaatgacaagaaa
gtgactatggaagcattcaaaaatgataaccgtcagtgcaagttaatcgtgcaatttatg
ctagaactaatgggagactgtatccctgatagggttgctcagcattctgcggtcatcctt
gttacatctaggaaaaagccacctaaaaatgatgccaacaacaaaatagtgctgagagat
gcagacagaaaagaaacgtacctatccagagtaagagtcatctttaaacttcttgattat
gtgagttactttcttttgcctaaactgggcaagatgtcggtgtggagcgaggcaggagcg
attgcagcaaccgtcacccccggagcccggcggcggcagcagcagcagcagcagcagcgc
ggggaggagacagcagccagccgcagtagccgccgcagccgcgggagcaatgcagacagc
accttgagaacgcgctaa

>gi568815586r:117934199_118152480|GENSCAN_predicted_peptide_4|384_aa
METSALKQQEQPAATKIRNLPWPAAGTDLQRFPPTPPSYPDSSVLFRAFASSHPFTPSSI
CRRRRRLSHLPLATTNLLSIYGFAYSGHFMVEKYRPQTLNDLISHQDILSTIQKFINEDR
LPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTR
TIFKKGFKLVILDEADAMTQDAQNALRREWNRCHKQLFVRVIAPLSALRPPDSLHGKVCK
KPPSLPIEVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE
EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILD
WMLNQDFTTAYRSILSHDLLATET

>gi568815586r:117934199_118152480|GENSCAN_predicted_CDS_4|1155_bp
atggagacctcagcactcaagcagcaggagcagcccgcggcgaccaagatcaggaacctg
ccctggcctgcagccgggaccgacctgcagaggtttcccccgacaccccccagctaccca
gactcgtccgttctgtttagggcttttgccagttctcaccctttcacccccagctccatt
tgccgaagaagaaggcggctttcgcacctgcccctggcaaccactaatctgctttctatc
tatggatttgcctattctggacatttcatggttgaaaaataccggccacagaccctgaat
gatctcatttctcatcaggacattctgagtaccattcagaagtttatcaatgaagaccga
ctgccacacttgcttctctacggtcccccagggacaggcaagacatctaccatcctagcc
tgtgcgaaacagctatataaagacaaagaatttggctccatggtcttggagctgaatgct
tcagatgaccgaggaatagacatcattcgaggaccgatcctgagctttgctagcacaagg
acaatatttaagaaaggctttaagctagtgatcttggatgaagcagacgccatgactcag
gacgcccagaatgccttgagaagagaatggaaccggtgtcataagcaactctttgttcgg
gttattgctcccttgagtgctctaaggcctccagacagtctccatggaaaagtctgcaaa
aagccgccctccctgcccatagaagtaattgagaaattcacagaaaataccagattctgc
ctcatctgtaactatctgtcaaagatcatccctgccttgcagtcccgctgcacgaggttt
cggttcggtcccctgactcctgaactcatggttccccgcctggaacatgtcgtggaagaa
gagaaagttgatataagtgaagatggaatgaaagcactagtcactctttccagtggagac
atgcgtagggctctgaacattttgcagagcaccaatatggcctttgggaaggtgacagag
gagactgtctacacctgcaccgggcacccgctcaagtcagacattgccaacatcctggac
tggatgttgaatcaagatttcaccacagcctacagaagtatcctttctcatgacctcctg
gccaccgagacctga

>gi568815586r:117934199_118152480|GENSCAN_predicted_peptide_5|886_aa
MAAGGSAPEPRVLVCLGALLAGWVAVGLEAVVIGEVHENVTLHCGNISGLRGQVTWYRNN
SEPVFLLSSNSSLRPAEPRFSLVDATSLHIESLSLGDEGIYTCQEILNVTQWFQVWLQVA
SGPYQIEVHIVATGTLPNGTLYAARGSQVDFSCNSSSRPPPVVEWWFQALNSSSESFGHN
LTVNFFSLLLISPNLQGNYTCLALNQLSKRHRKVTTELLVYYPPPSAPQCWAQMASGSFM
LQLTCRWDGGYPDPDFLWIEEPGGVIVGKSKLGVEMLSESQLSDGKKFKCVTSHIVGPES
GASCMVQIRGPSLLSEPMKTCFTGGNVTLTCQVSGAYPPAKILWLRNLTQPEVIIQPSSR
HLITQDGQNSTLTIHNCSQDLDEGYYICRADSPVGVREMEIWLSVKEPLNIGGIVGTIVS
LLLLGLAIISGLLLHYSPVFCWKVGNTSRGQNMDDVMVLVDSEEEEEEEEEEEEDAAVGE
QEGAREREELPKEIPKQDHIHRVTALVNGNIEQMGNGFQDLQEEPLLLAELKPGRPHQFD
WKSSCETWSVAFSPDGSWFAWSQGHCIVKLIPWPLEEQFIPKGFEAKSRSSKNETKGRGS
PKEKTLDCGQIVWGLAFSPWPSPPSRKLWARHHPQVPDVSCLVLATGLNDGQIKIWEVQT
GLLLLNLSGHQDVVRDLSFTPSGSLILVSASRDKTLRIWDLNKHGKQIQVLSGHLQWVYC
CSISPDCSMLCSAAGEKSVFLWSMRSYTLIRKLEGHQSSVVSCDFSPDSALLVTASYDTN
VIMWDPYTGERLRSLHHTQVDPAMDDSDVHISSLRSVCFSPEGLYLATVADDRTRDGHVQ
FWTAPRVLSSLKHLCRKALRSFLTTYQVLALPIPKKMKEFLTYRTF

>gi568815586r:117934199_118152480|GENSCAN_predicted_CDS_5|2661_bp
atggccgcaggcggcagtgcgcccgagccccgcgtcctcgtctgcctcggggcgctcctg
gccggctgggtcgccgtaggattggaggctgttgtcattggagaagttcatgagaatgtt
actctgcactgtggcaacatctcgggactgaggggccaggtgacctggtaccggaacaac
tcggagcctgtcttccttctctcgtccaactctagcctccggccagctgagcctcgcttc
tctctagtggatgccacctccctgcacattgaatcgctgagcctgggagatgagggaatc
tacacctgccaggagatcctgaatgtgactcagtggttccaagtgtggctgcaggtggcc
agcggcccctatcagattgaggtccacatcgtggccaccggcacactccccaacggcacc
ctctacgcagccaggggctcccaggtggacttcagctgcaacagcagctccaggccacca
cccgtggttgaatggtggttccaggccctgaattccagcagcgagtcctttggccacaac
ctgacagtcaactttttctcactgttactgatatcgccaaacctccaagggaactacacc
tgtttagccttgaatcagctcagcaagagacatcgaaaggtgaccaccgagctcctggtc
tactatccccctccatcagctccccagtgctgggcacagatggcatcaggatcgttcatg
ttgcagcttacctgtcgctgggatgggggataccctgaccctgacttcctgtggatagaa
gagccaggaggtgtaatcgtggggaagtcaaagctgggggtggaaatgctgagcgagtcc
cagctgtcggatggcaagaagttcaagtgtgttacaagccacatagttgggccagagtcg
ggcgccagctgcatggtgcagatcaggggtccctcccttctctctgagcccatgaagact
tgcttcactgggggcaatgtgacgcttacatgccaggtgtctggggcctacccccctgcc
aagatcctgtggctgaggaaccttacccagcccgaggtgatcatccagcctagcagccgc
catctcattacccaggatggccagaactccaccctcactatccacaactgctcccaggac
ctggatgagggctactacatctgccgagctgacagccctgtaggggtgagggagatggaa
atctggctgagtgtgaaagaacctttaaatatcggggggattgtgggaaccattgtgagc
ctccttctgctgggactggccattatctcagggcttctgttgcattatagccctgtgttc
tgctggaaagtaggaaacacttccaggggacaaaacatggatgatgtcatggttttggtg
gattcagaagaggaagaggaggaggaggaggaggaggaggaagatgctgcagtaggggaa
caggagggagcacgtgagagagaggagttgccaaaagaaatacctaagcaggaccacatt
cacagagtgaccgccttggtgaatgggaacatagaacagatgggaaatggattccaggat
cttcaagaggaaccgctgctgctggccgaactcaagcccgggcgcccccaccagtttgat
tggaagtccagctgtgaaacctggagcgtcgccttctccccagatggctcctggtttgct
tggtctcaaggacactgcatcgtcaaactgatcccctggccgttggaggagcagttcatc
cctaaagggtttgaagccaaaagccgaagtagcaaaaatgagacgaaagggcggggcagc
ccaaaagagaagacgctggactgtggtcagattgtctgggggctggccttcagcccgtgg
ccttccccacccagcaggaagctctgggcacgccaccacccccaagtgcccgatgtctct
tgcctggttcttgctacgggactcaacgatgggcagatcaagatctgggaggtgcagaca
gggctcctgcttttgaatctttccggccaccaagatgtcgtgagagatctgagcttcaca
cccagtggcagtttgattttggtctccgcgtcacgggataagactcttcgcatctgggac
ctgaataaacacggtaaacagattcaagtgttatcgggccacctgcagtgggtttactgc
tgttccatctccccagactgcagcatgctgtgctctgcagctggagagaagtcggtcttt
ctatggagcatgaggtcctacacgttaattcggaagctagagggccatcaaagcagtgtt
gtctcttgtgacttctcccccgactctgccctgcttgtcacggcttcttacgataccaat
gtgattatgtgggacccctacaccggcgaaaggctgaggtcactccaccacacccaggtt
gaccccgccatggatgacagtgacgtccacattagctcactgagatctgtgtgcttctct
ccagaaggcttgtaccttgccacggtggcagatgacaggacaagagatggccacgtccag
ttctggacagctcctagggtcctgtcctcactgaagcacttatgccggaaagcccttcga
agtttcctaacaacttaccaagtcctagcactgccaatccccaagaaaatgaaagagttc
ctcacatacaggactttttaa

>gi568815586r:117934199_118152480|GENSCAN_predicted_peptide_6|221_aa
MGFLHVGQAGLELLTSELEKTTLKFIWNQKRACIAKTILSKKNKAGGITLPDFKLYYKAT
VTKTAWYWYQNRDIDQWNRTEPSEITPHIYNHLIFDKPIKNKKWGKDFLFNKWCWENWLT
ICRKLKLDPFLTPHTKINSRWIKDLNVRPKTIKTLEENLGNTIQDIGMGKDFMSKTPKAM
ATKAKIEKWDLIKELLHSKRNYHQSEQATYRMGENFCHLPI

>gi568815586r:117934199_118152480|GENSCAN_predicted_CDS_6|666_bp
atggggtttctccatgttggtcaggctggtctcgaactcctgacctcagaattggaaaaa
actactttaaagttcatatggaaccaaaaaagagcctgcattgccaagacaatcttaagc
aaaaagaacaaagctggaggcatcacgctacctgacttcaaactatactacaaggctaca
gtaaccaaaacagcatggtactggtaccaaaacagagatatagaccaatggaacagaaca
gagccctcagaaataacaccacacatctacaaccatctgatctttgacaaacctatcaaa
aacaagaaatggggaaaggatttcctatttaataaatggtgctgggaaaactggctaacc
atatgtagaaagctgaaactggatcccttccttacacctcatacaaaaattaattcaaga
tggattaaagacttaaatgttagacctaaaaccataaaaaccctagaagaaaacttaggc
aataccattcaggacataggcatgggcaaggacttcatgtctaaaacaccaaaagcaatg
gcaacaaaagccaaaatagaaaaatgggatctaattaaagagcttctgcacagcaaaaga
aactaccatcagagtgaacaggcaacctacagaatgggagaaaatttttgccatctaccc
atctga

>gi568815586r:117934199_118152480|GENSCAN_predicted_peptide_7|187_aa
MPVDLSKWSGPLSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDS
GKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRY
VWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVPKL
YEQLSGK

>gi568815586r:117934199_118152480|GENSCAN_predicted_CDS_7|564_bp
atgccggtggacctcagcaagtggtccgggcccttgagcctgcaagaagtggacgagcag
ccgcagcacccgctgcatgtcacctacgccggggcggcggtggacgagctgggcaaagtg
ctgacgcccacccaggttaagaatagacccaccagcatttcgtgggatggtcttgattca
gggaagctctacaccttggtcctgacagacccggatgctcccagcaggaaggatcccaaa
tacagagaatggcatcatttcctggtggtcaacatgaagggcaatgacatcagcagtggc
acagtcctctccgattatgtgggctcggggcctcccaagggcacaggcctccaccgctat
gtctggctggtttacgagcaggacaggccgctaaagtgtgacgagcccatcctcagcaac
cgatctggagaccaccgtggcaaattcaaggtggcgtccttccgtaaaaagtatgagctc
agggccccggtggctggcacgtgttaccaggccgagtgggatgactatgtgcccaaactg
tacgagcagctgtctgggaagtag

>gi568815586r:117934199_118152480|GENSCAN_predicted_peptide_8|114_aa
LRLDEAQEAECQALRLQLQQEMELLNAYQSKIKMQTEAQHERELQKLEQRVSLRRAHLEQ
KIEEELAALQKERSERIKNLLERQEREIETFDMESLRMGFGNLVTLDFPKEDYR

>gi568815586r:117934199_118152480|GENSCAN_predicted_CDS_8|345_bp
ttacggctagatgaggctcaagaagcagaatgccaggccttgaggctacagctccagcag
gaaatggagctgctcaacgcctaccagagcaaaatcaagatgcaaacagaggcacaacat
gaacgtgagctccagaagctagagcagagagtgtctctgcgcagagcacaccttgagcag
aagattgaagaggagctggctgcccttcagaaggaacgcagcgagagaataaagaaccta
ttggaaaggcaagagcgagagattgaaacttttgacatggagagcctcagaatgggattt
gggaatttggttacattagattttcctaaggaggactacagatga