GENSCAN 1.0	Date run:  8-Nov-116	Time: 00:07:21

Sequence gi568815586r:110437040_110683031 : 245992 bp : 44.41% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.14 Intr -    113     45   69  2  0  120   86   -20 0.194   0.38
 1.13 Intr -   3349   3273   77  2  2   77   94   140 0.578  12.73
 1.12 Intr -   8512   8413  100  1  1   77   89    21 0.515   0.78
 1.11 Intr -  16832  16704  129  2  0   38   86   139 0.995   9.59
 1.10 Intr -  18643  18547   97  0  1   70  107    61 0.997   6.21
 1.09 Intr -  18891  18776  116  0  2   96   81   104 0.991   9.75
 1.08 Intr -  20595  20471  125  1  2   47   47    74 0.890  -0.50
 1.07 Intr -  22823  22656  168  0  0   76   68   210 0.929  17.72
 1.06 Intr -  28175  28067  109  2  1   83  119   163 0.619  18.76
 1.05 Intr -  31948  31688  261  1  0   58   52   225 0.455  13.58
 1.04 Intr -  55083  54996   88  2  1  104    9    66 0.008   0.27
 1.03 Intr -  56192  55957  236  2  2   60   92   121 0.911   6.19
 1.02 Intr -  59164  58973  192  1  0   23   49   151 0.135   4.39
 1.01 Init -  65309  65250   60  2  0   81   49    86 0.059   5.48
 1.00 Prom -  67624  67585   40                              -2.06

 2.00 Prom +  68253  68292   40                              -3.86
 2.01 Init +  81177  81184    8  2  2   40  103     0 0.317  -2.87
 2.02 Intr +  82755  82877  123  0  0   69  116    36 0.793   4.20
 2.03 Intr +  85138  85372  235  1  1   73   93    67 0.825   3.39
 2.04 Term +  90333  90482  150  2  0  103   53    77 0.759   3.61
 2.05 PlyA +  90604  90609    6                               1.05

 3.07 PlyA -  93948  93943    6                               1.05
 3.06 Term - 100056  99998   59  1  2   97   37    61 0.700  -0.25
 3.05 Intr - 101234 101105  130  2  1   72   99   114 0.997  11.17
 3.04 Intr - 102906 102783  124  2  1  106   86   119 0.779  14.09
 3.03 Intr - 109039 108841  199  2  1   59   89   177 0.997  13.31
 3.02 Intr - 114929 114750  180  0  0  101  123    22 0.880   6.84
 3.01 Init - 145992 145770  223  0  1   68  109   563 0.886  53.32
 3.00 Prom - 166170 166131   40                              -2.86

 4.00 Prom + 175103 175142   40                              -4.96
 4.01 Init + 177144 177363  220  2  1   65   76   249 0.977  18.19
 4.02 Intr + 182797 182917  121  2  1   95  113    77 0.811  10.45
 4.03 Intr + 189323 189453  131  2  2   91   93   -12 0.974  -0.06
 4.04 Intr + 191728 191879  152  2  2   59   83   128 0.480   9.28
 4.05 Intr + 195433 195520   88  0  1   97  110    -7 0.452   1.94
 4.06 Intr + 197631 197740  110  1  2   18   90    86 0.399   1.80
 4.07 Intr + 199442 199462   21  1  0   95  116     5 0.397   1.74
 4.08 Intr + 203344 203478  135  0  0   74   92   127 0.279  12.46
 4.09 Intr + 203985 204110  126  2  0   71  110    29 0.943   4.28
 4.10 Intr + 207953 208090  138  1  0   35   98   149 0.810  11.26
 4.11 Intr + 210172 210297  126  0  0   78   80    40 0.807   3.08
 4.12 Term + 210710 210853  144  1  0   89   45    59 0.893  -0.39
 4.13 PlyA + 211541 211546    6                              -0.45

 5.07 PlyA - 211763 211758    6                               1.05
 5.06 Term - 212709 212563  147  0  0  104   42    29 0.517  -2.20
 5.05 Intr - 213241 213129  113  2  2   71  116    65 0.859   7.70
 5.04 Intr - 214409 214178  232  2  1  147   88   314 0.999  34.65
 5.03 Intr - 218299 218195  105  1  0  123   54   217 0.961  22.21
 5.02 Intr - 224409 224125  285  0  0   99   96   188 0.773  18.24
 5.01 Init - 240399 240253  147  0  0   76  100    56 0.484   5.69

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  23341  23314   28  1  1   34   89     1 0.855  -5.44
S.002 Sngl +  23949  24197  249  2  0   75   41   356 0.997  24.68
S.003 Term -  27500  27490   11  0  2  108   40    12 0.925  -3.24
S.004 Intr +  49286  49387  102  1  0   95   32   101 0.836   5.57
S.005 Term +  49495  49665  171  0  0   58   54    93 0.825   0.73
S.006 Term -  55083  54966  118  2  1  104   42    71 0.966   2.11


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586r:110437040_110683031|GENSCAN_predicted_peptide_1|609_aa
MAAIRPKKQARKARLSSTAQLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLC
TKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLAL
LQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVV
TYVYQLIGDDVKRAALQKSYAPSSRTPDPGRASPRRRDREPCAGAAVPASLPRQHACVRL
LVFRRGGSDAGFSPLRSRSDTARTASGERGGQIRDPGVTSTYCATMVQHCEALNRSVQVV
NLDPAAEHFNYSVMADIRELIEVDDVMEDDSLRFGPNGGLVFCMEYFANNFDWLENCLGH
VEDDYILFDCPGQIELYTHLPVMKQLVQQLEQWEFRVCGVFLVDSQFMVESFKFISGILA
ALSAMISLEIPQVNIMTKMDLLSKKAKKEIEKFLDPDMYSLLEDSTSDLRSKKFKKLTKA
ICGLIDDYSMVRFLPYDQSDEESMNIVLQHIDFAIQYGEDLEFKEPKAYHSSLMDPDTKL
IGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEIKNEADRTLIYITLYI
SECLKKLQK

>gi568815586r:110437040_110683031|GENSCAN_predicted_CDS_1|1827_bp
atggctgccatccgccctaaaaagcaggctcggaaggcgcgcctcagctcgacggcccag
ttggtgttggtattaggagatctgcacatcccacaccggtgcaacagtttgccagctaaa
ttcaaaaaactcctggtgccaggaaaaattcagcacattctctgcacaggaaacctttgc
accaaagagagttatgactatctcaagactctggctggtgatgttcatattgtgagagga
gacttcgatgagaatctgaattatccagaacagaaagttgtgactgttggacagttcaaa
attggtctgatccatggacatcaagttattccatggggagatatggccagcttagccctg
ttgcagaggcaatttgatgtggacattcttatctcgggacacacacacaaatttgaagca
tttgagcatgaaaataaattctacattaatccaggttctgccactggggcatataatgcc
ttggaaacaaacattattccatcatttgtgttgatggatatccaggcttctacagtggtc
acctatgtgtatcagctaattggagatgatgtgaaacgggcggctctgcagaagagctac
gctccgtccagtcggaccccggaccctggccgggcatctccgcggcgccgagaccgcgag
ccgtgtgcgggagcagctgtcccagcatccctcccccgacagcacgcgtgcgtcaggctg
ctggtattccggagaggcggctcggatgctggcttctcgcccctccgaagccgttcggac
actgcccgaacagcttcgggagagcggggcgggcagatccgcgaccccggagttacgagc
acctactgtgccaccatggtccagcactgtgaagccctcaaccggtctgtccaagttgta
aacctggatccagcagcagaacacttcaactactccgtgatggctgacatccgggaactg
atcgaggtggatgatgtaatggaggatgattctctgcgattcggtcccaacggaggattg
gtattttgcatggagtactttgccaataattttgactggctggagaactgtcttggccat
gtagaggacgactatatcctttttgattgtccaggtcagattgagttgtacactcacctg
cctgtgatgaaacagctggtccagcagctcgagcagtgggagttccgagtctgtggagtt
tttcttgttgattctcagttcatggtggagtcattcaagtttatttctggcatcttggca
gccctgagtgccatgatctctctagaaattccgcaagtcaacatcatgacaaaaatggat
ctgctgagtaaaaaagcaaaaaaggaaattgagaaatttttagatccagacatgtattct
ttattagaagattctacaagtgacttaagaagcaaaaaattcaagaaactgactaaagct
atatgtggactgattgatgactacagcatggttcgatttttaccttacgatcagtcagat
gaagaaagcatgaacattgtattgcagcatattgattttgccattcaatatggagaagac
ctagaatttaaagaaccaaaggcttaccactcttctctcatggatcctgataccaaactc
atcggaaacatggcactgttgcctatcagaagtcaattcaaaggacctgcccccagagag
acaaaagatacagatattgtggatgaagccatctattacttcaaggccaatgtcttcttc
aaaaactatgaaattaagaatgaagctgataggaccttgatatatataactctctacatt
tctgaatgtctgaagaaactgcaaaag

>gi568815586r:110437040_110683031|GENSCAN_predicted_peptide_2|171_aa
MCIPLALSIDDMLVEANFILATLADEQSRASSPQSLCLSQKRKRSDLIEKKAGKNVTGQA
LECISKKAAPRRLYPKETLTNISALENCGSPAMKRVDGDVSEVSESSVSNTEEVPGSLCL
RKCDITSSEVHGLSTWTSGNHFPACHSQYHGYLESRFNSCKASLAEGIFTF

>gi568815586r:110437040_110683031|GENSCAN_predicted_CDS_2|516_bp
atgtgcatacctctggctttgagtattgatgatatgttagtggaagctaactttattttg
gccacattagctgatgaacaaagtagagcatcttcaccacagtcactgtgtctttcacag
aaacgaaaaaggtcagatctgattgaaaaaaaggctggcaaaaatgtaactggccaggcc
ctggaatgtatttcaaaaaaagcagcaccaagaaggctttatcctaaggagactctcaca
aacatatctgcattggaaaactgtggcagccctgcaatgaaaagagtggatggagatgtc
agtgaagtatcagaaagcagtgtcagcaacacagaggaagtgccagggtctctgtgtctc
agaaagtgtgacataacatcttcagaggttcatgggcttagtacatggacctctgggaac
cattttcctgcctgccacagccagtatcacggctatctggagagcaggttcaacagctgc
aaggcaagccttgcagagggcatcttcaccttctga

>gi568815586r:110437040_110683031|GENSCAN_predicted_peptide_3|304_aa
MFSVLSYGRLVARAVLGGLSQTDPRAGGGGGGDYGLVTAGCGFGKDFRKGLLKKGACYGD
DACFVARHRSADVLGVADGVGGWRDYGVDPSQFSGTLMRTCERLVKEGRFVPSNPIGILT
TSYCELLQNKVPLLGSSTACIVVLDRTSHRLHTANLGDSGFLVVRGGEVVHRSDEQQHYF
NTPFQLSIAPPEAEGVVLSDSPDAADSTSFDVQLGDIILTATDGLFDNMPDYMILQELKK
LKNSNYESIQQTARSIAEQAHELAYDPNYMSPFAQFACDNGLNVRGGKPDDITVLLSIVA
EYTD

>gi568815586r:110437040_110683031|GENSCAN_predicted_CDS_3|915_bp
atgttctcggtcctctcgtacgggcggctggtggcccgcgccgtgctcggcggcctctcg
cagaccgaccccagggccggcggcggcggcggcggcgactacggactggtgacggccggc
tgcggcttcgggaaggacttccgtaagggcctcctcaagaagggcgcgtgctacggggac
gacgcgtgcttcgtggcccggcaccgttccgcggacgtgctcggggttgcagatggtgta
ggaggctggagagactatggagttgatccatctcaattctcagggactttaatgcggacg
tgtgaacgtttagtaaaagaaggacggttcgtacctagtaatcccattggaattctcacc
acaagctactgtgagttgctgcaaaataaagtccctttgctcggtagcagcaccgcctgc
attgtggtgctggacagaaccagccaccgcttacacacagcaaacctgggcgattcaggc
ttcctggttgtcaggggtggtgaagtcgtgcaccgatcagatgagcagcagcattacttc
aacactccattccagctctcaatcgctccccctgaagccgagggagtcgtcttgagcgac
agtccggatgctgctgatagcacgtctttcgatgtccagctaggagacattatcctgacg
gcaacagatggactctttgacaacatgcctgattatatgattcttcaggagctaaaaaag
ttaaagaattcaaattatgagagtatacaacagactgccagaagcattgctgagcaagct
catgagctggcctatgacccaaattatatgtcaccttttgcacagtttgcatgtgacaat
ggattgaatgtgagaggtggaaagccagatgacatcaccgtccttctttcaatagtggct
gagtatacagactag

>gi568815586r:110437040_110683031|GENSCAN_predicted_peptide_4|503_aa
MRPRGLPPLLVVLLGCWASVSAQTDATPAVTTEGLNSTEAALATFGTFPSTRPPGTPRAP
GPSSGPRPTPVTDVAVLCVCDLSPAQCDINCCCDPDCSSVDFSVFSACSVPVVTGDSQFC
SQKAVIYSLNFTANPPQRVFELVDQINPSIFCIHITNYKPALSFINPEVPDENNFDTLMK
TSDGFTLNAESYVSFTTKLDIPTAAKYEYGVPLQTSDSFLRFPSSLTSSLCTDNNPAAFL
VNQAVKCTRKINLEQCEEIEALSMAFYSSPEILRVPDSRKKVPITVQSIVIQSLNKTLTR
REDTDVLQPTLVNAGHFSLCVNVVLEVKYSLTYTDAGEVTKADLSFVLGTVSSVVVPLQQ
KFEIHFLQLVAQKVKSLLWGQGFPDYVAPFGNSQAQDMLDWVPIHFITQSFNRKDSCQLP
GALVIEVKWTKYGSLLNPQAKIVNVTANLISSSFPEANSGNERTILISTAVTFVDVSAPA
EAGFRAPPAINARLPFNFFFPFV

>gi568815586r:110437040_110683031|GENSCAN_predicted_CDS_4|1512_bp
atgaggccgcgaggtctcccgccgctcctggtggtgctcctgggctgctgggcctccgtg
agcgcccagaccgatgccaccccggcggtgacgacagagggcctcaactccaccgaggca
gccctggccaccttcggaactttcccgtcgaccaggccccccgggactcccagggctcca
gggccctcctccggccccaggcctaccccagtcacggacgttgctgttctctgtgtctgt
gacttatccccagcacagtgtgacatcaactgctgctgtgatcccgactgcagctccgtg
gatttcagtgtcttttctgcctgctcagttccagttgtcacgggcgacagccagttttgt
agtcaaaaagcagtcatctattcattgaattttacagcaaacccacctcaaagagtattt
gaacttgttgaccagattaatccatctattttctgcattcatattacaaactataaacct
gcattatcctttattaatccagaagtacctgatgaaaacaattttgatacattgatgaaa
acatctgatggttttacattgaatgctgaatcatatgtttccttcacaaccaaactggat
attcctactgctgctaaatatgagtatggggttcctctgcagacttcagattcgtttctg
agatttccttcgtccctgacatcatctctgtgcactgataataaccctgcagcgtttctg
gtgaaccaggctgttaagtgcaccagaaaaataaatttagaacagtgtgaagaaattgaa
gccctcagcatggctttttacagcagcccggaaattctgagggtacctgattcaagaaaa
aaggtccctatcactgttcagtccatcgtcattcagtctctaaataaaacgctcacccga
cgggaggacactgatgtgctgcagccgactctcgtcaacgctggacactttagcctttgc
gtgaatgttgttcttgaggtaaagtacagcctcacatacacagatgcaggtgaagtcacc
aaagctgatctctcattcgttctggggacagttagcagcgtagtggtcccactgcagcaa
aagtttgaaattcattttcttcagctcgtagcacagaaggtgaagagcctgctgtggggc
cagggcttcccagattacgtggccccttttggaaattcccaggcccaggacatgctggac
tgggtgcccatccacttcatcacccagtcattcaacaggaaggattcctgccagctccca
ggggctttggttatagaagtgaagtggactaaatacggatccctgctgaatccacaggcc
aaaatagtcaatgtaactgcaaatctaatttcatcctcctttcctgaggccaactcagga
aatgaaaggacgattcttatttccactgcggttacttttgtggatgtgtctgcacctgca
gaggcaggcttcagagctccaccagccatcaatgccaggctgccctttaacttcttcttc
ccgtttgtttga

>gi568815586r:110437040_110683031|GENSCAN_predicted_peptide_5|342_aa
MKKKIEDRVKGGCTFYAKEVTCAKVLWLEKPAKYERLNVARVGTEVRGKAVTRRAKVAPA
ERMSKFLRHFTVVGDDYHAWNINYKKWENEEEEEEEEQPPPTPVSGEEGRAAAPDVAPAP
GPAPRAPLDFRGMLRKLFSSHRFQVIIICLVVLDALLVLAELILDLKIIQPDKNNYAAMV
FHYMSITILVFFMMEIIFKLFVFRLEFFHHKFEILDAVVVVVSFILDIVLLFQEHQFEAL
GLLILLRLWRVARIINGIIISVKTRSERQLLRLKQMNVQLAAKIQHLEFSCSEKIQPRRH
ILPEAVPTPTSQGSARSPTFVFSLLSLLLSEAYLIVAVSSAD

>gi568815586r:110437040_110683031|GENSCAN_predicted_CDS_5|1029_bp
atgaagaagaagatagaggacagggtgaaagggggttgcacattctacgcaaaagaagtc
acgtgtgcaaaggtcctgtggttggagaaaccagccaagtatgaaaggctcaatgtggcc
agagtggggacagaggtgagagggaaggcagtcacccgcagggccaaggtggctcccgct
gagaggatgagcaagttcttaaggcacttcacggtcgtgggagacgactaccatgcctgg
aacatcaactacaagaaatgggagaatgaagaggaggaggaggaggaggagcagccacca
cccacaccagtctcaggcgaggaaggcagagctgcagcccctgacgttgcccctgcccct
ggccccgcacccagggccccccttgacttcaggggcatgttgaggaaactgttcagctcc
cacaggtttcaggtcatcatcatctgcttggtggttctggatgccctcctggtgcttgct
gagctcatcctggacctgaagatcatccagcccgacaagaataactatgctgccatggta
ttccactacatgagcatcaccatcttggtcttttttatgatggagatcatctttaaatta
tttgtcttccgcctggagttctttcaccacaagtttgagatcctggatgccgtcgtggtg
gtggtctcattcatcctcgacattgtcctcctgttccaggagcaccagtttgaggctctg
ggcctgctgattctgctccggctgtggcgggtggcccggatcatcaatgggattatcatc
tcagttaagacacgttcagaacggcaactcttaaggttaaaacagatgaatgtacaattg
gccgccaagattcaacaccttgagttcagctgctctgagaagatccagcccaggcgtcac
atcctccctgaagctgtgcccacccccacatcccagggctctgccaggtcccccacgttt
gtcttctcactgctgtcactgctgctcagtgaagcctatctgattgtagcagtctcctca
gcagactga