GENSCAN 1.0	Date run:  5-Nov-116	Time: 04:30:37

Sequence gi568815586f:2917431_3140475 : 223045 bp : 49.86% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   3333   3492  160  2  1   75   66    77 0.859   3.76
 1.02 Intr +   4832   4972  141  0  0   94   77   180 0.961  17.82
 1.03 Intr +  12818  12915   98  0  2   72   50    90 0.866   3.33
 1.04 Intr +  13607  13810  204  1  0   95   86   184 0.998  18.30
 1.05 Intr +  15988  16100  113  0  2  120   35   129 0.971   9.98
 1.06 Intr +  17017  17131  115  1  1   71   73    95 0.934   6.75
 1.07 Intr +  20201  20299   99  1  0  104   92    58 0.968   8.11
 1.08 Intr +  20684  20855  172  1  1   58   77   140 0.902   9.42
 1.09 Intr +  21881  21994  114  0  0  108   72    94 0.514  10.22
 1.10 Intr +  41326  41472  147  2  0   34   40   137 0.242   3.71
 1.11 Intr +  53203  53330  128  2  2   30   57    73 0.080  -1.20
 1.12 Intr +  53664  53796  133  2  1   44   63   146 0.663   7.92
 1.13 Intr +  57049  57116   68  2  2  108   34    18 0.208  -2.98
 1.14 Intr +  57288  57370   83  2  2  122   39    58 0.312   2.74
 1.15 Intr +  60892  60935   44  1  2   81   98    56 0.314   3.78
 1.16 Intr +  77308  77562  255  2  0  120   91   367 0.862  37.62
 1.17 Term +  82585  82601   17  2  2  145   43     6 0.693   0.20
 1.18 PlyA +  84347  84352    6                              -0.45

 2.00 Prom +  88961  89000   40                              -4.86
 2.01 Init +  93083  93266  184  1  1   75   68   109 0.698   6.88
 2.02 Intr +  93574  93701  128  2  2   90   86   121 0.506  12.50
 2.03 Intr +  94740  94802   63  2  0   54  116    98 0.930   8.11
 2.04 Intr +  99968 100096  129  1  0  107   98   102 0.995  13.99
 2.05 Intr + 101115 101158   44  2  2  101   61    -8 0.607  -5.16
 2.06 Intr + 101685 101740   56  0  2  145   94     3 0.850   5.22
 2.07 Intr + 103204 103343  140  2  2   90   90   118 0.678  12.38
 2.08 Intr + 104414 104587  174  1  0   85   94   277 0.826  28.14
 2.09 Intr + 109043 109133   91  1  1   87   67    46 0.739   1.97
 2.10 Intr + 111059 111127   69  0  0   60  103    35 0.602   1.35
 2.11 Intr + 115970 116010   41  0  2   96   97    14 0.857   1.04
 2.12 Intr + 120538 120678  141  0  0  124   75   314 0.971  34.25
 2.13 Intr + 122677 122829  153  0  0   73   69   326 0.996  29.47
 2.14 Term + 122935 123048  114  0  0  166   54   119 0.955  14.87
 2.15 PlyA + 123214 123219    6                               1.05

 3.14 PlyA - 124043 124038    6                               1.05
 3.13 Term - 132162 132102   61  2  1  100   48    85 0.174   2.98
 3.12 Intr - 153255 153183   73  1  1   87  100    89 0.514   8.46
 3.11 Intr - 154731 154004  728  2  2  -15   22   910 0.777  65.18
 3.10 Intr - 160949 160831  119  2  2   33  110    17 0.000  -2.34
 3.09 Intr - 168399 168187  213  0  0  116   91   141 0.895  16.11
 3.08 Intr - 175448 175265  184  1  1   64   82    53 0.806   2.09
 3.07 Intr - 175720 175582  139  2  1   24   66    86 0.811  -0.48
 3.06 Intr - 179078 178916  163  2  1   84  100    56 0.797   5.95
 3.05 Intr - 198015 197892  124  2  1   91   27    70 0.140   1.79
 3.04 Intr - 199519 199441   79  2  1   83   57    65 0.158   1.51
 3.03 Intr - 205565 205397  169  2  1   95   44    70 0.263   2.82
 3.02 Intr - 213651 213514  138  0  0  -24   74   243 0.937  12.36
 3.01 Init - 214330 214025  306  1  0   33  100   157 0.918   8.70

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 155990 155986    5  2  2   87   92     0 0.970  -0.23
S.002 Term - 173683 173432  252  1  0   63   39   191 0.950   7.34


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586f:2917431_3140475|GENSCAN_predicted_peptide_1|696_aa
RLLLEKRQRKKRLEPFMVQPNPEARLRRAKPRASDEQTPLVNCHTPHSNVILHGIDGPAA
VLKPDEVHAPSVSSSVVEEDAENTVDTASKPGLQERLQKHDISESVNFDEETDGISQSAC
LERPNSASSQNSTDTGTSGSATAAQPADNLLGDIDDLEDFVYSPAPQGVTVRCRIIRDKR
GMDRGLFPTYYMYLEKEENQKIFLLAARKRKKSKTANYLISIDPVDLSREGESYVGKLRS
NLMGTKFTVYDRGICPMKGRGLVGAAHTRQELAAISYETNVLGFKGPRKMSVIIPGMTLN
HKQIPYQPQNNHDSLLSRWQNRTMENLVELHNKAPVWNSDTQSYVLNFRGRVTQASVKNF
QIVHKNDPDYIVMQFGRVADDVFTLDYNYPLCAVQAFGIGLSSFDMAVLQMPKGQERKTE
RAKAGEGKRGGTGSGSGNGAREFLLPGSPEQVSFVLHNEMDFRSEDPNLLFAVKSTCLLE
VRNDSILMTRQVPIPRQVQREYGTEALVPVLMELAGKWTVKLAVTYCKTKERAQAGSVAV
PEPWPSPEARVFILPPGGADAFPEGRACTEAPPQMPVLLGHLVWADPRVLTGTFSSSETE
TLYPLNSPTSAPPSGALEGTAGTITSNEWSSPTSPEGSTASGGSQALDKPIDNDAEGVWS
PDIEQSFQEALAIYPPCGRRKIILSDEGKMYGGPSY

>gi568815586f:2917431_3140475|GENSCAN_predicted_CDS_1|2091_bp
aggctactacttgagaagaggcaaaggaaaaagcgccttgagccatttatggtgcagccc
aatccagaagccaggctacgtcgggcaaagccaagggccagtgatgagcagactcccttg
gtgaactgtcatactccccacagcaatgtcatcttacatggtattgatggtccagctgct
gtcctgaaaccagacgaagttcatgctccatcagtaagctcctctgttgtggaagaagat
gctgaaaacaccgtggatactgcttccaagccaggacttcaggagcgtctccaaaagcat
gatatctctgaaagtgtgaacttcgatgaggagactgatggaatatcccagtcagcatgt
ttagaaagacccaattctgcatcaagccagaattcaaccgatacaggcacttccggttct
gctactgccgcccaaccagctgataacctcctgggagacatagacgacctggaggacttt
gtgtatagtcctgcccctcaaggtgtcacagtaagatgtcggataatccgggataaaagg
ggaatggatcggggtctcttccccacctactatatgtacttggaaaaagaagaaaatcag
aagatatttcttcttgcagctagaaagcggaaaaagagcaaaacagccaactaccttatc
tccattgatccagttgatttatctcgtgaaggagaaagttatgtcggcaagcttagatcc
aacctcatggggaccaagtttacagtttatgaccgtggcatctgccccatgaagggccgg
ggtttggtaggagcggcccacacccggcaggagctggctgccatctcctatgaaacaaac
gtacttggatttaaaggtcctaggaaaatgtctgtgatcattcctggaatgacactgaat
cataagcagatcccctatcagccacaaaacaaccatgacagtttgctctcaaggtggcag
aacagaactatggaaaatctggttgagctgcacaacaaggcccccgtctggaacagtgac
actcagtcctatgtcctcaacttccgtggccgggtcactcaggcgtctgtgaagaacttc
cagatagtccacaaaaatgaccctgattatatagtcatgcagtttggacgtgtggcagat
gacgtgttcacactggattacaactacccactttgtgcagtacaggcctttggcatcggt
ctttctagctttgacatggcggttttacagatgcccaaggggcaggagagaaaaacggaa
agagctaaagccggggagggcaagcgagggggcactggcagcggatctgggaatggagcc
cgcgagttcctgcttcctggttccccggagcaagtgtcctttgttctccataatgaaatg
gacttcagatccgaagatcctaatctactctttgctgtgaagagcacctgccttctggaa
gtgagaaatgacagcatcctgatgacaagacaggttcccatccctcggcaggtgcagcgg
gagtatggaacggaagccctggttcctgtcctcatggaacttgcagggaaatggactgtg
aagctagcagtaacatactgcaagacgaaagaacgtgcacaagcagggtctgtggcagtg
cctgagccatggcccagtccagaggctcgagtcttcattcttccccctgggggtgcagat
gcttttccagagggcagggcgtgcaccgaggccccaccccagatgcccgtgctgcttgga
cacctggtttgggctgaccctcgggttctgacaggaactttttcatcttccgaaactgaa
acgctgtacccgttaaacagtccaacgagcgctcctccaagcggagccttggagggcacg
gccggcaccattacctccaacgagtggagctctcccacctcccctgaggggagcaccgcc
tctgggggcagtcaggcactggacaagcccatcgacaatgacgcagagggcgtgtggagc
ccggatattgagcagagtttccaggaggccctcgccatctacccgccctgtggcaggcgc
aaaatcatcctgtcggacgagggcaagatgtatggtgggccatcctattag

>gi568815586f:2917431_3140475|GENSCAN_predicted_peptide_2|508_aa
MPAAACRQDKKSGRFYSFTEAEGTVAVTQGKAEGRAAPWSLPSVKKAQEKVWGEERRPPA
LGRNELIARYIKLRTGKTRTRKQVGLKRRVGVPGVVPQHQSAPKVSSHIQVLARRKAREI
QAKLKDQAAKDKALQSMAAMSSAQIISATAFHSSMALARGPGRPAVSGFWQGALPGQAGT
SHDVKPFSQQTYAVQPPLPLPGFESPAGPAPSPSAPPAPPWQGRSVASSKLWMLEFSAFL
EQQQDPDTYNKHLFVHIGQSSPSYSDPYLEAVDIRQIYDKFPEKKGGLKDLFERGPSNAF
FLVKFWCMTSVLRVMTAGVPATVAIFQPSKEASLAPSILANVKWYLIVVFICISLMTDDE
PRKSSRGHLSLGPADLNTNIEDEGSSFYGVSSQYESPENMIITCSTKVCSFGKQVVEKVE
TEYARYENGHYSYRIHRSPLCEYMINFIHKLKHLPEKYMMNSVLENFTILQVVTNRDTQE
TLLCIAYVFEVSASEHGAQHHIYRLVKE

>gi568815586f:2917431_3140475|GENSCAN_predicted_CDS_2|1527_bp
atgcccgctgctgcctgcagacaggacaagaagtctggacgcttctactcgtttacagag
gcggagggcacggtggcagtcacacagggcaaggccgagggccgggcagctccctggagc
ctcccaagtgtgaagaaggcccaggagaaagtgtggggagaggagaggaggccgccagcg
ctgggtcggaacgagctgattgcccgctacatcaagctccggacagggaagacccgcacc
aggaagcaggtgggcctcaagagacgggtaggggtcccgggggtggtaccccagcaccag
tctgctcccaaggtctccagccacatccaggtgctggctcgtcgcaaagctcgcgagatc
caggccaagctaaaggaccaggcagctaaggacaaggccctgcagagcatggctgccatg
tcgtctgcacagatcatctccgccacggccttccacagtagcatggccctcgcccggggc
cccggccgcccagcagtctcagggttttggcaaggagctttgccaggccaagccggaacg
tcccatgatgtgaagcctttctctcagcaaacctatgctgtccagcctccgctgcctctg
ccagggtttgagtctcctgcagggcccgccccatcgccctctgcgcccccggcaccccca
tggcagggccgcagcgtggccagctccaagctctggatgttggagttctctgccttcctg
gagcagcagcaggacccggacacgtacaacaagcacctgttcgtgcacattggccagtcc
agcccaagctacagcgacccctacctcgaagccgtggacatccgccaaatctatgacaaa
ttcccggagaaaaagggtggactcaaggatctcttcgaacggggaccctccaatgccttt
tttcttgtgaagttctggtgtatgacttctgtactcagggtcatgactgctggagttcca
gccactgtagccatcttccaaccatcaaaagaagccagtttagctccctccatcctagca
aatgtgaagtggtatctcattgtggtttttatctgcatttccctgatgactgatgatgag
ccccgcaagtccagcagaggccacctgtctctggggccggcagacctcaacaccaacatc
gaggatgaaggcagctccttctatggggtctccagccagtatgagagccccgagaacatg
atcatcacctgctccacgaaggtctgctctttcggcaagcaggtggtggagaaagttgag
acagagtatgctcgctatgagaatggacactactcttaccgcatccaccggtccccgctc
tgtgagtacatgatcaacttcatccacaagctcaagcacctccctgagaagtacatgatg
aacagcgtgctggagaacttcaccatcctgcaggtggtcaccaacagagacacacaggag
accttgctgtgcattgcctatgtctttgaggtgtcagccagtgagcacggggctcagcac
cacatctacaggctggtgaaagaatga

>gi568815586f:2917431_3140475|GENSCAN_predicted_peptide_3|831_aa
MFLKNCEDFGKDTIPGNKHLRAYPTRVQGQDLSCKFPEYGTSRKPSSSITAHITASIPCT
PATVRPEAFISIRGFSHFIPTTALGGRWDCPQFRVKKMRLEKVERVYPVKGGEEMQHSKE
PLSKNKYHTGTGPNDLEGSALEIRCGYNGPLTNPEASTVQTDIPVSCLQVPGAKRKLSVW
HFGSPPRGKEAGSPAFNLPVNRNQEPPRAEDESRKQQTTTKPECVQGRPQRYLPKRTENI
WPHKSMAHELHSHIMSKPEKVVITHKSVNDEWVPGNEKTGKAPVNGKPRPLLFRRNKETM
HKRYLGEMLEMSLPLRMPVRPQKSHAMCPTIRVSIPKASGPKSFPREDNVYDSGQRQDSE
CFPCSRFNLNIRTQLTAASLGKPHTGSKDVATVLLKNNPQRPGSPLSILREGPSLSLRGH
PMCQTTETHLDKQWVRGREGTSQRQKAGPGLEAKTQAYQLIPPQKPPPAEPERTLAVGHP
TCRFVGEENGLKKPIDLPKFAQQLQSRKASWRRKYLSHPREKDSCRSEGHAHIMRDWVSE
LRVTRRPGKTAEVQVLVLGGRGHLLGRLAAIVAKQVLLGQKVVVVRCEGINISGNFYRNM
LHVKAPGLPPQADELQPFLRPLPRPGPQRIFLRAVRGMLPPRTKRGQAALDRLKVSDGIP
PPYDEKNRMVVPAALKIVRLRPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYR
KKKQLMRLRKQAEKNMEKKTDKYTGVLKTHRPWSEPNKDCSFLMLGLACPSSIITLECAG
PGGSSSPGWLLVTDTYQAPRGPQTLELPQSSRSSRGWLLYRLREAFKDHPL

>gi568815586f:2917431_3140475|GENSCAN_predicted_CDS_3|2496_bp
atgtttttaaaaaattgcgaggactttgggaaggacacaatacctggtaacaaacacctg
agggcctatccgacgagggtccaaggacaggacctgtcctgcaagttcccagagtatgga
acctcccggaagccaagctccagcatcacagcacacatcacagccagcattccctgcaca
cctgccacggtcaggccagaagctttcatcagcattagaggattttctcacttcataccc
acaacagccctaggaggtagatgggactgcccccagtttcgggtgaagaaaatgaggctg
gagaaggtagagcgtgtgtaccccgtcaaaggaggcgaggagatgcagcacagcaaagag
ccgctcagcaaaaacaaataccacacgggcactggccccaacgaccttgaaggttctgcc
cttgaaatccgatgcggctacaacggacccctgaccaaccctgaagcatccactgtccaa
acagacatccctgtttcctgcctccaagtgcctggggcaaaacgcaagctctctgtttgg
cattttggcagccctcctaggggcaaggaggcggggtcacctgctttcaacctgccagta
aatagaaaccaagagccacctcgggctgaggatgagtccaggaaacaacaaacaaccacc
aagccagaatgcgtccaagggcggccacagaggtatttgcccaagagaactgaaaacata
tggccacacaaaagcatggcacatgaacttcacagccacattatgtctaagccagaaaag
gtggtaataactcacaagtcagtcaatgacgaatgggtgccaggcaatgagaaaacaggg
aaagcaccagtgaatggaaaaccaaggcctctgctcttcagaaggaataaagagacaatg
cacaagagatacttaggagagatgttagaaatgtccctgcctctaagaatgccagtgagg
ccgcagaagtcccatgccatgtgtcccacaattcgtgtcagcatcccaaaggccagcggc
cccaaaagctttcccagagaagacaatgtgtatgattcaggacaacgccaggactctgaa
tgctttccgtgttccaggttcaatctgaacatcagaacccagttgactgcggcctctctg
ggaaagccacacactggttccaaagatgttgctactgtgctcctgaagaacaatcctcag
cgcccagggagtccactgagcatcctcagggaaggaccatccttgtccttacggggacat
ccaatgtgccaaacaactgagacccatttggataagcagtgggtcagaggccgggaaggc
actagtcagaggcagaaggcaggcccaggactggaagccaaaacccaggcataccaactc
atcccacctcagaaaccacctccagcagagccagaaagaaccttggcagtgggtcaccca
acctgccgctttgtaggtgaggaaaatggcctgaagaagccaatcgacttgcccaagttc
gcacagcagttacagtccaggaaagcttcctggaggaggaaatacctgagtcaccccagg
gaaaaggacagctgcaggtcagaagggcacgcgcacataatgagagactgggtctctgaa
ctaagagttaccaggcgaccggggaagacggcggaggtgcaggtcctggtgctcggtggt
cgaggccatctcctgggccgcctggcggccatcgtggctaagcaggtactgctgggccag
aaggtggtggtcgtacgctgcgagggcatcaacatttctggcaatttctacagaaacatg
ttgcatgttaaagcacctggccttcctccacaagcggatgaactccaacccttcctgagg
cccctgccacgtccgggcccccaacgcatcttcctgcgggcggtgcgaggcatgctgccc
cccaggaccaagcgaggccaggccgccctggaccgcctcaaggtgtctgacggcatccca
ccgccctacgacgagaaaaaccggatggtggttcctgctgccctcaagatcgtgcgtctg
aggcctacaagaaagtttgcctatctggggcgcctggctcacgaggttggctggaagtac
caggcagtgacagccaccctggaggagaagaggaaggagaaggccaagatccactaccgg
aagaagaaacagctcatgaggctacggaaacaggccgaaaagaacatggagaagaaaact
gacaaatacacaggggtcctcaagacccacagaccctggtctgagcccaataaagactgt
tcattcctcatgcttggcctggcctgcccttcctccatcatcaccctggaatgtgcggga
cccgggggcagcagcagtccggggtggttactcgtcacggacacctaccaggcaccaaga
ggacctcaaacgctggagctcccacagtcgtcaaggtcttcacgtggctggctgctgtat
cgcctcagagaggccttcaaggaccacccactctga