GENSCAN 1.0	Date run:  4-Nov-116	Time: 15:16:50

Sequence gi568815585f:49530448_49731035 : 200588 bp : 43.32% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.12 PlyA -    736    731    6                               1.05
 1.11 Term -   3815   3675  141  2  0   71   48   109 0.568   3.13
 1.10 Intr -  10559  10429  131  0  2   98   78    33 0.875   3.71
 1.09 Intr -  11380  11229  152  0  2   85   52   166 0.968  12.51
 1.08 Intr -  14416  14290  127  2  1   83   68   121 0.997   9.34
 1.07 Intr -  19201  19011  191  0  2   59   86    96 0.738   5.73
 1.06 Intr -  21021  20879  143  0  2   89   88    74 0.999   6.65
 1.05 Intr -  21838  21731  108  1  0  111   98    90 0.991  12.78
 1.04 Intr -  25226  25068  159  2  0  136   78    85 0.999  12.48
 1.03 Intr -  29637  29471  167  1  2   80  107   109 0.996  11.68
 1.02 Intr -  36321  36171  151  0  1   54  116    66 0.997   5.74
 1.01 Init -  36832  36707  126  1  0   78   94   107 0.975   9.98
 1.00 Prom -  49703  49664   40                              -1.16

 2.00 Prom +  55862  55901   40                              -4.66
 2.01 Init +  68487  68546   60  2  0   65   78    50 0.251   2.95
 2.02 Term +  99983 100591  609  1  0  120   42   542 0.104  47.30
 2.03 PlyA + 101760 101765    6                               1.05

 3.00 Prom + 102470 102509   40                              -6.86
 3.01 Init + 103239 103338  100  2  1   62   79    28 0.339  -0.28
 3.02 Intr + 105625 105667   43  2  1   89  109    51 0.774   4.60
 3.03 Intr + 110565 110650   86  0  2  100  119    53 0.951   9.06
 3.04 Term + 111718 111794   77  2  2  106   44    39 0.806  -0.70
 3.05 PlyA + 112299 112304    6                               1.05

 4.09 PlyA - 113801 113796    6                               1.05
 4.08 Term - 129543 129467   77  1  2  126   54    33 0.806   1.70
 4.07 Intr - 130761 130622  140  2  2   76   78    95 0.955   7.41
 4.06 Intr - 132748 132610  139  2  1   73   94   114 0.998  10.02
 4.05 Intr - 135760 135657  104  0  2   35   56    57 0.039  -2.98
 4.04 Intr - 144840 144734  107  0  2   72  107    43 0.271   3.61
 4.03 Intr - 148000 147841  160  0  1   38   54   130 0.077   4.59
 4.02 Intr - 149623 149535   89  1  2   86   85    10 0.048  -0.73
 4.01 Init - 160977 160807  171  0  0   74  119   382 0.905  37.34
 4.00 Prom - 164769 164730   40                              -4.36

 5.10 PlyA - 165183 165178    6                               1.05
 5.09 Term - 171451 171353   99  1  0   92   32    67 0.907  -0.37
 5.08 Intr - 172033 171939   95  2  2   75   95    43 0.963   3.38
 5.07 Intr - 175336 175174  163  1  1  107   94    52 0.998   7.25
 5.06 Intr - 175722 175651   72  0  0   83  109    21 0.905   3.30
 5.05 Intr - 175925 175821  105  2  0   68   81    34 0.683   1.11
 5.04 Intr - 179253 179125  129  0  0   41  116    60 0.969   4.99
 5.03 Intr - 180575 180444  132  2  0   87  108    27 0.971   5.44
 5.02 Intr - 189372 189328   45  0  0  110  111   -11 0.790   2.01
 5.01 Intr - 191677 191508  170  2  2   76   84   102 0.922   8.27

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl + 100001 100591  591  1  0  113   42   518 0.880  45.89
S.002 Init - 134052 133950  103  0  1   73   68    26 0.815  -0.50


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815585f:49530448_49731035|GENSCAN_predicted_peptide_1|531_aa
MVDVGKWPIFTLLSPQEIASIRKACVFGTSASEALYVTDNDEVFVFGLNYSNCLGTGDNQ
STLVPKKLEGLCGKKIKSLSYGSGPHVLLSTEDGVVYAWGHNGYSQLGNGTTNQGIAPVQ
VCTNLLIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHI
KRVVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAALHSVCVNQIVC
GYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHIMVEKERVVEIAACHSAHTSAA
KTQGGHVYMWGQCRGQSVILPHLTHFSCTDDVFACFATPAVSWRLLSVEHEDFLTVAESL
KKEFDSPETADLKFRIDGKYIHVHKAVLKIRCEHFRSMFQSYWNEDMKEVIEIDQFSYPV
YRAFLQYLYTDTVDLPPEDAIGLLDLATSYCENRLKKLCQHIIKRGITVENAFSLFSAAV
RYDAEDLEEFCFKFCINHLTEVTQTAAFWQMDGPLLKEFIAKASKCGAFKN

>gi568815585f:49530448_49731035|GENSCAN_predicted_CDS_1|1596_bp
atggtggatgtcggaaagtggcccatcttcactctactctcccctcaagagatcgcgtct
attcggaaggcgtgtgtcttcggcacctcagccagtgaagcactgtacgttactgacaat
gatgaggtctttgtatttggactgaactatagtaactgtctaggaactggagataaccag
agtacacttgtacccaaaaagctagaaggcttatgtggaaagaagattaaaagcctcagt
tacgggagtggaccacatgttcttctcagcaccgaagatggagtggtttatgcctggggc
cacaatggatatagccagcttgggaatgggacgaccaaccaaggcattgctcccgtccag
gtctgtaccaatctcttgatcaagcaagtggtggaagtagcttgtggctcacatcattca
atggctctggcagctgatggagaggtgtttgcttggggttataacaactgtggccaagtg
ggatcaggttctacagcaaatcaaccaactcctcgaaaagttacaaactgtttacatatt
aagagggtagttggcattgcctgtggtcagacttcatccatggctgttctggacaatggc
gaggtatatggctggggttacaatggcaacggtcagctgggcctgggaaacaatggcaac
cagctgacccctgtgagagtggcagctttgcacagcgtgtgtgtgaaccagattgtctgc
ggttacgcacatactctagcactaacagatgagggcttgctgtatgcctggggagctaac
acatatgggcagctgggaactggcaataaaaataacctgctaagcccagcacacatcatg
gtggagaaagaaagggtggtagagattgcagcctgtcactctgcccacacgtctgcagcc
aagacgcagggtgggcacgtgtacatgtggggccagtgccggggtcagtccgtgatcctc
ccgcacctcacccacttctcctgcaccgacgacgtgtttgcctgctttgccactcccgcc
gtctcgtggcgcctcctgtctgtggagcatgaagactttttaacagttgcagagtcactg
aagaaagaatttgatagtccagaaactgctgatctgaagtttcgaattgatggaaaatat
attcatgtccataaagctgttttgaaaatcaggtgtgagcattttcgatccatgttccag
tcgtattggaatgaagacatgaaggaagtgatagaaatcgatcagttttcttacccagtg
tatcgtgcctttctccagtacctctacacagacacagtcgacctgccgccagaagatgct
ataggtcttctggatttggcgacatcttactgtgaaaacagactgaaaaaactttgtcag
cacattatcaagagaggaattactgtggagaatgccttttcgctattctctgctgcagtc
agatatgatgcagaggatttagaagaattctgctttaagttttgcatcaatcatttgaca
gaagttacacagactgcagcattttggcaaatggatggccctctgctaaaggaattcatt
gctaaagccagtaaatgtggagcctttaagaactga

>gi568815585f:49530448_49731035|GENSCAN_predicted_peptide_2|222_aa
MWVKPLAVPDEAKIGMEGDEDSAVATMGSVNSRGHKAEAQVVMMGLDSAGKTTLLYKLKG
HQLVETLPTVGFNVEPLKAPGHVSLTLWDVGGQAPLRASWKDYLEGTDILVYVLDSTDEA
RLPESAAELTEVLNDPNMAGVPFLVLANKQEAPDALPLLKIRNRLSLERFQDHCWELRGC
SALTGEGLPEALQSLWSLLKSRSCMCLQARAHGAERGDSKRS

>gi568815585f:49530448_49731035|GENSCAN_predicted_CDS_2|669_bp
atgtgggtgaagccccttgcagtgccagatgaagccaagattggaatggagggagatgag
gattcagcagtggccaccatgggttctgtgaattccagaggtcacaaggcggaagcccag
gtggtgatgatgggcctggactcggcgggcaagaccacgctcctttacaagctgaagggc
caccagctggtggagaccctgcccactgttggtttcaacgtggagcctctgaaagctcct
gggcacgtgtcactgactctctgggacgttggggggcaggccccgctcagagccagctgg
aaggactatctggaaggcacagatatcctcgtgtacgtgctggacagcacagatgaagcc
cgcttacccgagtcggcggctgagctcacagaagtcctgaacgaccccaacatggctggc
gtccccttcttggtgctggccaacaagcaggaggcacctgatgcacttccgctgcttaag
atcagaaacaggctgagtctagagagattccaggaccactgctgggagctccggggctgc
agtgccctcactggggaggggctgcccgaggccctgcagagcctgtggagcctcctgaaa
tctcgcagctgcatgtgtctgcaggcgagagcccatggggctgagcgcggagacagcaag
agatcttga

>gi568815585f:49530448_49731035|GENSCAN_predicted_peptide_3|101_aa
MTEGLECHELEKVSAEEPGWDGAGTAGFSFCRVGGTEHQITRIELLSRPKLLQSEYWKAQ
HEPLHALRMHPPPAKAVSDDSRGFGKELREHSSSRLSLRHF

>gi568815585f:49530448_49731035|GENSCAN_predicted_CDS_3|306_bp
atgacagaaggactggaatgccatgaactggagaaggtgagcgctgaagaaccaggatgg
gacggggctggaacagctgggttcagcttttgcagggtgggagggactgaacatcaaatc
actcgcatcgaattactcagcagaccaaagctcttgcagtctgagtactggaaagcccag
catgagcctctccacgcacttcgaatgcaccctcctccagcaaaggctgtcagtgatgac
tcaagaggttttgggaaggagctcagggaacactcaagcagcaggctcagcttacggcac
ttctga

>gi568815585f:49530448_49731035|GENSCAN_predicted_peptide_4|328_aa
MGAEWELGAEAGGSLLLCAALLAAGCALGLRLGRGQGAADRGALIWLCYDALVHFALTLP
GPPLRVLTILSVSNMHLPSAVLKAGNWARNLQPAMPEPAPPPLLKGTAPCSAATCPIDRP
RAEECRRAAQDWRVALPTALVHKYHCVIISYSIQYSNAVQVCNAGAKGYPYSLRVRQANH
ILCGEPGLIPPPPLVTAKPACVAPARTLFPGKEYGKADARWVYFDPTIVSVEILTVALDG
SLALFLIYAIVKEKYYRHFLQITLCVCELYGCWMTFLPEWLTRSPNLNTSNWLYCWLYLF
FFNGWLPTLQRLQALVPDAKLVLPFRST

>gi568815585f:49530448_49731035|GENSCAN_predicted_CDS_4|987_bp
atgggcgctgagtgggagctgggggccgaggctggcggttcgctgctgctgtgcgccgcg
ctgctggcggcgggctgcgccctgggcctgcgcctgggccgcgggcagggggcggcggac
cgcggggcgctcatctggctctgctacgacgcgctggtgcacttcgcgctgacactacct
gggcctccgcttagggtcctcaccatcctctcagtaagcaacatgcatcttccaagtgct
gtgctcaaggctggaaattgggctcggaacttgcagcccgccatgcccgagccggcacca
cccccgctcctgaagggcactgccccctgctccgcagcgacctgtccgattgaccgccca
agggctgaggagtgccggcgcgcggcgcaggactggcgggtagctctgcccacggccctg
gtgcacaaataccattgtgttataatttcctacagtattcagtacagtaatgccgtacag
gtttgtaacgcaggagcaaaaggctatccatatagcctacgtgtgagacaagccaatcac
atcctctgtggggaaccagggctcatcccaccccctcctcttgttactgcaaagcctgcc
tgcgtggcccctgcccgaacactgttcccagggaaagaatatggcaaagctgatgcaaga
tgggtttattttgatccaaccattgtgtctgtggaaattctgaccgtcgccctggatggg
tctctggcattgttcctcatttatgccatagtcaaagaaaaatattaccggcatttcctg
cagatcaccctgtgcgtgtgcgagctgtatggctgctggatgaccttcctcccagagtgg
ctcaccagaagccccaacctcaacaccagcaactggctgtactgttggctttacctgttt
ttttttaacggttggcttcctaccctgcagaggctgcaggccctggtcccagatgccaaa
ttggttttacctttcagaagtacttga

>gi568815585f:49530448_49731035|GENSCAN_predicted_peptide_5|336_aa
XDGPQCRDYVISLGVVKPLLSFISPSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILP
ALCVLIYHTDINILVDTVWALSYLTDGGNEQIQMVIDSGVVPFLVPLLSHQEVKVQTAAL
RAVGNIVTGTDEQTQVVLNCDVLSHFPNLLSHPKEKINKEAVWFLSNITAGNQQQVQAVI
DAGLIPMIIHQLAKGDFGTQKEAAWAISNLTISGRKDQVEYLVQQNVIPPFCNLLSVKDS
QVVQVVLDGLKNILIMAGDEASTIAEIIEECGGLEKIEVLQQHENEDIYKLAFEIIDQYF
SGDDIDEDPCLIPEATQGGTYNFDPTANLQTKEFNF

>gi568815585f:49530448_49731035|GENSCAN_predicted_CDS_5|1011_bp
ngtgatggtcctcaatgtagagattatgtcatatcactgggagttgtcaaacctcttctg
tccttcatcagtccctccatccccatcaccttccttcggaacgtcacatgggtcattgtc
aatctctgcaggaataaggatcccccgccgcctatggagacagttcaggagattttgcca
gctttatgtgtcctcatataccatacagatataaacattcttgtagacactgtttgggct
ctgtcatacttgacagatggaggtaatgaacagatacagatggttattgattcaggagtt
gtgccctttcttgtgccccttctgagccatcaggaagtcaaagttcaaacagcagccctc
agagcagttggcaacatagtgactggcaccgacgagcagacccaggttgttctcaattgt
gatgtcctgtcacacttcccaaatctcttatcacacccaaaagagaagataaataaggaa
gcagtgtggttcctttccaacataacagcaggcaaccagcaacaagttcaagctgtaata
gatgctggattaattcctatgataattcatcagcttgctaagggggactttggaacacaa
aaagaagctgcttgggcaatcagcaacttaacaataagtggcagaaaagatcaggttgag
taccttgtacagcagaatgtaataccaccgttctgtaatttactgtcagtgaaagattct
caagtggttcaggtggttctagatggtctaaaaaacattctgataatggccggtgatgaa
gcaagcacaatagctgaaataatagaggaatgtggaggtttggagaaaattgaagtttta
cagcaacatgaaaatgaagacatatataaattagcatttgaaatcatagatcagtatttc
tctggtgatgatattgatgaagatccctgcctcattcctgaagcaacacaaggaggtacc
tacaattttgatccaacagccaaccttcaaacaaaagaatttaatttttaa