GENSCAN 1.0	Date run:  5-Nov-116	Time: 22:42:37

Sequence gi568815585f:27170945_27373491 : 202547 bp : 44.27% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Term +  11890  11990  101  2  2  135   37    64 0.860   4.29
 1.02 PlyA +  12032  12037    6                               1.05

 2.00 Prom +  18298  18337   40                              -3.96
 2.01 Init +  37034  37108   75  1  0   89   56    62 0.081   4.21
 2.02 Intr +  43999  44290  292  0  1   14   52   142 0.036  -0.09
 2.03 Intr +  45762  46430  669  1  0   56   69   162 0.054   2.77
 2.04 Term +  48324  48490  167  1  2  107   43    59 0.427   1.38
 2.05 PlyA +  49404  49409    6                               1.05

 3.00 Prom +  50569  50608   40                               0.24
 3.01 Init +  52069  52222  154  0  1   95   60    21 0.073   0.14
 3.02 Intr +  80522  80641  120  0  0   66   91    48 0.005   3.37
 3.03 Intr +  83276  83337   62  0  2   79   92    40 0.257   1.95
 3.04 Intr +  84298  84410  113  0  2   61   97    48 0.580   2.18
 3.05 Intr +  85240  85390  151  1  1   66  110   141 0.994  14.26
 3.06 Intr +  90473  90675  203  1  2   80   97    15 0.103  -0.32
 3.07 Intr +  98398  98497  100  1  1   99   93    57 0.617   7.41
 3.08 Intr +  99929 100124  196  1  1   34  101   234 0.677  18.29
 3.09 Intr + 100540 100596   57  2  0   92   94    84 0.994   8.26
 3.10 Intr + 100695 100774   80  1  2   60  110   130 0.994  11.67
 3.11 Term + 102083 102550  468  1  0   70   43   392 0.914  27.87
 3.12 PlyA + 102650 102655    6                              -0.45

 4.03 PlyA - 102738 102733    6                               1.05
 4.02 Term - 104479 104378  102  1  0   82   48    81 0.223   1.78
 4.01 Init - 124435 124316  120  1  0   44   43   119 0.276   3.19
 4.00 Prom - 127840 127801   40                              -2.36

 5.03 PlyA - 130307 130302    6                               1.05
 5.02 Term - 138238 137964  275  2  2   15   42   195 0.585   3.23
 5.01 Init - 139886 139649  238  2  1   90   19   158 0.512   7.51
 5.00 Prom - 146989 146950   40                              -5.36

 6.00 Prom + 151694 151733   40                              -4.36
 6.01 Init + 153104 153203  100  1  1   81   48   106 0.555   6.32
 6.02 Intr + 162008 162129  122  0  2    1  -73   321 0.488   7.51
 6.03 Intr + 191464 191563  100  0  1   83   58    23 0.015  -1.52
 6.04 Term + 196485 196720  236  1  2   72   36   106 0.119   0.28
 6.05 PlyA + 197845 197850    6                               1.05

 7.02 PlyA - 198149 198144    6                               1.05
 7.01 Term - 201263 201155  109  1  1  107   41   100 0.373   5.18

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr -  80455  80276  180  1  0   11   50   199 0.896   8.46
S.002 Intr -  80861  80747  115  1  1  114   66    30 0.877   3.85
S.003 Init -  81979  81948   32  1  2   72   93    20 0.870   0.11
S.004 Term +  85492  85581   90  0  0   88   38    83 0.907   1.02


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815585f:27170945_27373491|GENSCAN_predicted_peptide_1|33_aa
XPQSTITSKTVTCLQIHSSAPTVHMSTLGAMAY

>gi568815585f:27170945_27373491|GENSCAN_predicted_CDS_1|102_bp
ngtccccagagcaccatcacttctaagactgtgacctgcttacagatccactcctctgcc
cccacagtccacatgtccaccctgggggccatggcttattga

>gi568815585f:27170945_27373491|GENSCAN_predicted_peptide_2|400_aa
MKAVIGMKALTRCGALKLDFSTSITVHVPFSLYDLKQIKADLGKFSEDPDRYIDVLQGLG
QTFNLAWRDVMLLLDQTLAFNEKNVALAAAREFGDTWYLSQVNDRMIAKERDKFPTGQQA
VPRSHRPHVQLTWMVLPQRFRDSPHLFGQALAQDLGHFSSPGTLVLQYVDDLLLATSSEA
LCQQATVDLLNFLADQGYKVSRSKAKLCLHQIKYLGLIFAKGTRALSKERIQPILAYPHP
KTLKQLRGFLGITGFCRLWIPRYSKIARPLYPLIKETQRANTHLVEWEPEAETAFKTLKQ
ALIHAPGLSFPTGQNFSLYITERAGIALGVLTQTRGTTSQPMAYLSPVAAILLLLTFGLC
IFNLLVKFVSSRIEAIKLQMVLQMEPQMSSINSFYQGPLD

>gi568815585f:27170945_27373491|GENSCAN_predicted_CDS_2|1203_bp
atgaaggctgtcatcggaatgaaggctctcaccagatgtggtgccttgaagttggacttc
tcaacctccatcactgtacatgtccccttctccctctatgatttaaagcagatcaaggca
gaccttgggaagttttcagaagatcctgataggtacatagatgtcctacagggtctaggg
caaaccttcaaccttgcttggagagatgtcatgctactattagatcaaaccctggccttt
aatgaaaagaatgtggctttagctgcagcccgagagtttggagatacctggtatcttagt
caagtaaatgatagaatgatagccaaagagagggataaattccctaccggtcagcaagcc
gtcccccgatcccacagaccacacgtccaacttacgtggatggtcttgccccaacggttt
agggatagccctcacctgtttggtcaggccctggcccaagatcttggtcacttctcaagt
ccaggcactctggtccttcagtatgtggatgacttacttttggctaccagttcggaagcc
ttgtgccagcaggctactgtagatctcttgaactttttagctgatcaagggtacaaggtg
tctaggtcaaaggccaagctttgcctacatcagatcaaatatctaggcctaatctttgcc
aaagggaccagggccctcagcaaggaacgaatacagcctatactggcttatcctcaccct
aagacattaaaacagttgcgggggttccttggaatcactggcttttgccgactatggatc
cccagatacagcaagatagccaggcccctctatcctctaatcaaggagacccagagagca
aatactcatctagtagaatgggaaccagaggcagaaacagccttcaaaaccttaaagcag
gccctaatacatgctccaggtttaagctttcccacaggacaaaacttctctttatacatc
acagagagagcagggatagctcttggagtccttactcagactcgtgggacaacctcacaa
ccaatggcatacctaagtcccgtggcagccatcttgctgttactcacctttggactctgt
atttttaacctacttgtcaaatttgtttcctctagaatcgaggccatcaagctacagatg
gtcttacaaatggaaccccaaatgagctcaattaacagcttctaccaaggacccctggac
tga

>gi568815585f:27170945_27373491|GENSCAN_predicted_peptide_3|567_aa
MDTAGGHYPKLSNTGTESQILQVLISKWELNNEHTDTRRGTTDIGAFLRVKERSRLRLAF
PSGSAVGSPQALVRRAPRPRLFPFGRNRHLPGVVPLATYMRIYKKGDIVDIKGMGTVQKG
MPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKE
NDQKKKEAKEKGTWVQLKRQVRFSLMALNTIYILMIIMAYKTLHYLYYSYLCDLVLYHFL
PQSQIQFHEPSRCAFNMPSAFVPEGFCNQQLPDMSKAIQGQPAPTSRTWKLPADASKGST
TLASRLRVRRGPALSDCAPDPGTRSMRPLSMSGHFLLAPIPESSSDYLLPKDIKLAVLGA
GRVGKSAMIVRFLTKRFIGDYEPNTGKLYSRLVYVEGDQLSLQIQDTPGGVQIQDSLPQV
VDSLSKCVQWAEGFLLVYSITDYDSYLSIRPLYQHIRKVHPDSKAPVIIVGNKGDLLHAR
QVQTQDGIQLANELGSLFLEISTSENYEDVCDVFQHLCKEVSKMHGLSGERRRASIIPRP
RSPNMQDLKRRFKQALSPKVKAPSALG

>gi568815585f:27170945_27373491|GENSCAN_predicted_CDS_3|1704_bp
atggatacagctggaggtcattatcctaagctaagtaacacaggaacagaaagccaaata
ctgcaagttctcatttctaagtgggagctaaacaacgagcacacagatactagaagggga
acaacagacattggggcctttttgagggtgaaggaaagaagtcgcttacggttggcgttt
ccctcaggcagcgccgtgggcagcccacaggcccttgtaaggcgcgcgccgcggccccgc
ctctttcctttcggccggaaccgccatcttccaggagttgttcctttggccacatatatg
cgaatctataagaaaggtgatattgtagacatcaagggaatgggtactgttcaaaaagga
atgccccacaagtgttaccatggcaaaactggaagagtctacaatgttacccagcatgct
gttggcattgttgtaaacaaacaagttaagggcaagattcttgccaagagaattaatgtg
cgtattgagcacattaagcactctaagagccgagatagcttcctgaaacgtgtgaaggaa
aatgatcagaaaaagaaagaagccaaagagaaaggtacctgggttcaactaaagcgccag
gtgagatttagcctcatggctttgaataccatttatattctgatgattatcatggcctac
aaaaccctacattatctgtactatagctacctttgcgacctagtcttgtaccacttcctg
ccccaaagtcagatccaatttcatgagccttctcgctgtgcctttaatatgccaagtgca
ttcgtgcctgagggcttttgtaaccaacagctgccagacatgagtaaggctatccaaggg
cagccagcccccacttccagaacctggaagctccctgcagatgcatcaaagggctcaaca
actctggcgagccggctccgggtgcggcgaggcccagccctctcggattgcgcgccggac
cccgggacgcgctccatgcggccgctcagcatgtccgggcactttctgctcgcacccatc
cccgagtcctcctcggactacctactgcccaaggacatcaaactggcggtgctgggcgcc
ggccgcgtgggcaagagcgcaatgatcgtgcgcttcctgaccaagagattcattggagac
tatgaaccgaatacaggcaagctgtattcacggctggtctatgtcgagggggaccagctc
tccctgcagatccaggatactcccgggggcgtccagatccaagacagcctcccccaggtc
gtcgattccctgtccaaatgcgtgcagtgggccgagggttttctgctggtctattccatc
acagactatgacagctacttgtccatccgacccctttatcagcacatccggaaggtccac
cctgactctaaagcccctgtcatcatcgtgggcaacaagggggaccttttgcatgcccgg
caggtgcagacacaggacggtattcagctagccaatgagctgggcagcctgttccttgaa
atttccactagcgaaaactacgaagatgtctgtgatgtgtttcagcatctctgcaaagaa
gtgagcaagatgcacggcctcagtggggaaagaagaagagcctccatcatccctcggccc
cgctctcccaacatgcaggacctgaagagacgcttcaagcaggctctgtctcccaaagtc
aaagccccctctgcactggggtga

>gi568815585f:27170945_27373491|GENSCAN_predicted_peptide_4|73_aa
MPLEVAKRVHVSTYVGVMRQASGDSGSENTESAGNVGVEWLLDYDLTFSHGMFDLSSLKA
EKPLVTGGSLDML

>gi568815585f:27170945_27373491|GENSCAN_predicted_CDS_4|222_bp
atgcccttggaagtggcaaagcgtgtgcacgtgagcacctatgttggagtgatgagacaa
gccagcggagacagtggatcagagaacactgaatcagctgggaacgtgggagttgagtgg
cttttagattatgatttaactttttcccatgggatgtttgatctcagttccttgaaggca
gagaagcccctggtgacaggtggcagtctggacatgttgtag

>gi568815585f:27170945_27373491|GENSCAN_predicted_peptide_5|170_aa
MAGPYWTGLEERWEMAQAVLQEDGIPQSGQKLRGLSDQAAHNDGRLNSDRRGPVIGDQRT
PPLNFYLPSLGKTTRCLARGSASGDGRITGGTEAAGTRRRLDVDGNGPTGTRRQDRQKRK
DEKFGWGSQRRKPRPLSGLTPWEDLSTLLPSDLPRVTSTRNLALVLQARV

>gi568815585f:27170945_27373491|GENSCAN_predicted_CDS_5|513_bp
atggctggaccgtactggactggactggaggagaggtgggagatggctcaggcagttctt
caggaagatggcattccccagtctggccagaagctcagaggcctgtcggaccaggctgcc
cacaatgacggccgtctcaacagtgatcgccgtgggcccgtcattggtgaccagaggacc
ccacccctcaacttttatctcccctcacttggcaaaacaacacggtgcctggcacgtggc
tcagcaagtggagacgggcgcatcaccggaggaaccgaggcggctggaacacgcaggcgg
ctggatgttgacgggaatggacccacaggtactaggagacaggaccggcagaagcggaag
gatgagaagtttggctggggcagtcagaggagaaagcccaggcctttgagcggcctgact
ccatgggaagatctctccactctactcccttctgacttaccccgagttacttccactcga
aaccttgcactcgttctccaagcccgggtgtga

>gi568815585f:27170945_27373491|GENSCAN_predicted_peptide_6|185_aa
MTSHYAPIGMAKIQTLTTPNDGEDVEQQELSLAEEDEDEDEDEDEEEEEEEEEEEEEEEE
EEEEEEGWMQWLMPSPELPGVRPDPWLRLASLPRPERRSQVGRCLHRELPQDLPHSDGKQ
MALEERFISCICGISPSTGKNLMLSYQPLWGFHLCSKKMDSFKNSKINWNGASSVQRVIN
GPGAD

>gi568815585f:27170945_27373491|GENSCAN_predicted_CDS_6|558_bp
atgacctcccactatgcacctattggaatggccaaaatccaaacactgacaacaccaaat
gatggtgaggatgtggagcaacaggaactctcacttgctgaagaagatgaagatgaagac
gaagacgaagatgaagaagaagaggaagaggaggaggaagaggaagaagaagaagaagag
gaagaagaagaagaagaaggctggatgcagtggctcatgcctagtccagagctccccggg
gtccgccctgacccgtggctccgcctcgcctcgctcccgcgcccagagcggcgctcacag
gtcggtcgctgcctgcacagagagctgccgcaggacctgcctcattcagatggaaagcaa
atggcactggaagaacgtttcatctcctgcatctgtgggatcagccccagtacaggcaaa
aatctcatgctttcataccagcccctctggggctttcatctctgctccaaaaaaatggac
agcttcaaaaattcaaaaatcaattggaatggagccagctctgtccagcgggttattaat
ggccctggagctgactaa

>gi568815585f:27170945_27373491|GENSCAN_predicted_peptide_7|36_aa
XCVSAGCRHSCRLPRELPSAKGIVPPGYAWKVVPND

>gi568815585f:27170945_27373491|GENSCAN_predicted_CDS_7|111_bp
nngtgtgtgagtgccggctgcagacacagctgccgacttcccagagagctgccctctgca
aagggcattgtaccacctggctatgcctggaaggttgtacccaatgactga