GENSCAN 1.0 Date run: 6-Nov-116 Time: 14:27:46 Sequence gi568815584r:34335204_34562207 : 227004 bp : 43.65% C+G : Isochore 2 (43 - 51 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.03 PlyA - 2647 2642 6 1.05 1.02 Term - 10747 10610 138 1 0 83 55 103 0.801 4.46 1.01 Init - 10903 10856 48 1 0 77 45 71 0.437 0.76 1.00 Prom - 16562 16523 40 -5.06 2.00 Prom + 17156 17195 40 -3.16 2.01 Init + 19271 19415 145 1 1 60 80 77 0.732 4.38 2.02 Intr + 24890 24981 92 0 2 93 84 -1 0.180 -0.29 2.03 Intr + 44325 44501 177 2 0 22 89 99 0.145 3.52 2.04 Intr + 52218 52279 62 2 2 95 66 24 0.019 -1.57 2.05 Intr + 53948 54088 141 2 0 22 108 122 0.043 7.07 2.06 Intr + 59741 59885 145 2 1 14 81 102 0.177 2.38 2.07 Term + 74554 74664 111 0 0 99 43 39 0.309 -0.94 2.08 PlyA + 75329 75334 6 1.05 3.00 Prom + 89886 89925 40 -2.46 3.01 Sngl + 97221 97556 336 2 0 56 38 232 0.883 11.03 3.02 PlyA + 97595 97600 6 1.05 4.06 PlyA - 97744 97739 6 1.05 4.05 Term - 126541 126480 62 2 2 69 42 70 0.469 -1.53 4.04 Intr - 127533 127513 21 1 0 75 116 18 0.211 0.82 4.03 Intr - 127871 127787 85 2 1 89 111 19 0.372 3.69 4.02 Intr - 134291 134202 90 2 0 95 115 54 0.961 8.99 4.01 Init - 135283 135221 63 1 0 82 102 12 0.944 1.38 4.00 Prom - 139214 139175 40 -3.46 5.00 Prom + 142092 142131 40 -6.06 5.01 Sngl + 150776 151249 474 1 0 91 47 491 0.997 41.41 5.02 PlyA + 153497 153502 6 1.05 6.10 PlyA - 155478 155473 6 1.05 6.09 Term - 181383 181107 277 2 1 90 41 141 0.325 4.53 6.08 Intr - 194272 194155 118 2 1 5 78 94 0.447 -0.38 6.07 Intr - 198336 198241 96 1 0 45 111 82 0.900 6.18 6.06 Intr - 201072 200891 182 2 2 21 57 175 0.944 7.21 6.05 Intr - 204441 204352 90 2 0 7 80 206 0.029 10.81 6.04 Intr - 206384 206213 172 0 1 23 29 136 0.006 0.20 6.03 Intr - 211679 211519 161 1 2 64 111 44 0.034 3.93 6.02 Intr - 221563 221411 153 0 0 127 9 64 0.046 1.59 6.01 Init - 224861 224800 62 2 2 78 75 54 0.274 3.82 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ S.001 Init - 204425 204352 74 2 2 110 80 161 0.965 18.04 Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815584r:34335204_34562207|GENSCAN_predicted_peptide_1|61_aa MGPALRAASRCCQPRAGRAWDLQPTMPEPPCPCRGLLHSLRLHDECRPLLRGAWSHRLPK G >gi568815584r:34335204_34562207|GENSCAN_predicted_CDS_1|186_bp atgggccctgcactcagagcagccagccgatgctgccagccccgggcaggcagagcttgg gacctgcagcccaccatgcccgagcctccctgcccctgccgtgggctcctgcacagcctg agactccacgacgagtgccgccccctgctccgtggcgcctggtcccatcgactgcccaag ggctga >gi568815584r:34335204_34562207|GENSCAN_predicted_peptide_2|290_aa MTSKPSLDQKIAQRTQRAQNTNPWSFGIQERSYDDPQLLQESNGHNGPAHRSRFLILPNK NDLLSYARNEVLGQKKYKELYENTVARAQEASREYLALGNTGFDSGGIEKSFEGDLPSAD EKNASLSFLAPSLGWQGQMPTPTLNSVPRNTCVVKDVNRSAQWNSPMQQDMNLAVAPVLI CCDLSDREGKITVWRKLNEIKDNTDKLNQEEVESLNRPITSFEIEAVINSLPTKKSPGPD GFTAKFYQRYREEQTQDSGLLLQTQAPSQFQHQATLADPGSRPTPIDSNS >gi568815584r:34335204_34562207|GENSCAN_predicted_CDS_2|873_bp atgacttccaaacccagtttggatcagaaaattgctcagagaactcagagagctcaaaac acaaatccatggagctttggaatccaagagagaagttatgatgatccccagttgctgcaa gagagcaatggacacaatgggcccgctcataggtcccgctttctgattcttcccaacaag aatgatttactttcctatgccagaaatgaagttctgggacaaaaaaaatataaggagctg tatgagaacactgtggccagagctcaggaggcctccagggaataccttgctctgggaaac acaggctttgattcaggcggcattgagaaatcctttgagggagacctcccatctgctgat gagaagaatgcttccctctcattcttggcaccctcacttggctggcaaggtcagatgcca acccctactctaaactctgttccacggaacacctgtgttgtaaaagatgttaataggagt gcccaatggaacagccccatgcaacaggacatgaacctggctgttgctccagttttgatc tgctgtgacctttcagacagagaaggcaaaataactgtttggaggaaactcaatgaaatt aaagataacactgacaaactaaaccaggaagaagtcgaatccctgaatagaccaataaca agttttgaaattgaggcagtaattaatagcttaccaaccaaaaaaagcccaggaccagat ggattcacagccaaattctaccagaggtacagagaggagcagacccaggattcaggcttg ctcctgcaaactcaagctccaagtcaattccagcaccaggccacccttgcagacccaggc tctagacctacaccaatagactcaaattcctga >gi568815584r:34335204_34562207|GENSCAN_predicted_peptide_3|111_aa MAYTPGEGAMNIVEITMKDLGYFINLVDKAAAGFERIASNFGGSSIVGKRLSNSLHATEK SFMNEELINAANFIVVLFLKIAIATPTFRNHDPDQSAAINIKARPSTNKKL >gi568815584r:34335204_34562207|GENSCAN_predicted_CDS_3|336_bp atggcatatacacctggtgaaggtgctatgaacattgttgaaattacaatgaaggactta ggatattttataaacttagttgataaagcagcagcagggtttgaaaggattgcttccaat tttggaggaagttccattgtgggtaaaaggctatcaaatagcttacatgctacagagaaa tctttcatgaatgaagagttgatcaatgcagcaaactttattgttgtcttatttttaaaa attgccatagccaccccaaccttccgcaaccatgacccagatcagtcagcagccatcaac atcaaggcaagaccctccaccaacaaaaaattatga >gi568815584r:34335204_34562207|GENSCAN_predicted_peptide_4|106_aa MNSSRAGSVLPALSLPQPLAKVGNTFSIEIFLDLKVRDDPRLINRDSQRQQNPLDQRASG LDPLGGYLQPLRGGQIDVFARPPAAQGGGDHVTVEHIAPGLDAFDL >gi568815584r:34335204_34562207|GENSCAN_predicted_CDS_4|321_bp atgaactcctcaagggctggctctgtgctacctgccctatcactcccacagcccctggca aaggttggaaatacttttagtatagaaattttcttggatctgaaagtacgagatgatcca cggttaataaacagggatagccagcggcagcagaacccactagatcagcgcgcttctggc cttgacccacttggtggttacctacagccactaagaggtgggcagatagatgtttttgct aggccgccagctgcacaaggaggcggggatcatgtaacagtggagcacatcgctcccggc ttggacgcctttgacctttaa >gi568815584r:34335204_34562207|GENSCAN_predicted_peptide_5|157_aa MALKAKKEALAPPKAEAKAKALKAKKAVMKDVHIHKKRRPARHPPSRGPGHCDSRPPKYP RKSAPRRNKLDRYAIIKFLWTTESAMKKIEDNTTYVFRVDVKANKQQIKQAVKKLPDNDA AKVNTLIRPDGEKKAYVQLAPDYDVLDVAKKKWDHLN >gi568815584r:34335204_34562207|GENSCAN_predicted_CDS_5|474_bp atggcgttgaaagcaaagaaggaagcgcttgcccctcctaaagccgaagccaaagcgaag gctttaaaggccaagaaggcagtgatgaaagatgtccacatccacaaaaaaagaagaccc gcacgtcacccaccttccagaggcccaggacactgcgactcgaggccacccaaatatcct cggaagagcgcccccaggagaaacaagcttgaccgttatgccatcatcaagtttctgtgg accactgagtccgccatgaagaagatagaagacaacaccacatatgtgttcagggtggat gttaaagccaacaagcagcagatcaaacaggctgtgaagaagctccctgacaatgatgcg gccaaggtcaacaccctgattcggcccgatggagagaagaaggcatatgttcaactggct ccagattacgatgttttggatgttgccaaaaaaaaatgggatcatctaaactga >gi568815584r:34335204_34562207|GENSCAN_predicted_peptide_6|436_aa MIVASRYQGGRYTPGLSLTSRPPFQVPDSRPRAHLRPTSPGDTQACPTPSVGPRSGSGRD RSAGDDPGKGVAKAGESANAVPHYHKLCSRVSHIWGNRRGQHIRSAMDKPRPGKTTFVIM VSPLPEQQMKGLDLDPEARALGPAFIHWWTSHGLIFTSEGYVKDKTHSASNGNSTVQTAL GNMPLQATMNRLPDDYDPYAVEEPSDEEPALSSSEDEVDVLLHGTPDQKRKLIRECLTGE SESSSEDEFEKEMEAELNSTMKTMEDKLSSLGTGSSSGNGKVATAPTRYYDDIYFDSDSE DEDRAVQVTKKKKKKQHKIPTNDELLYDPEKDNRDQAWVDAQRRGHESYKTQYRAMFVMN CSINKEEVLRYKASENRKKRRVHKKMRSNREDAAEKAETDVEEIYHPVMCTECSTEVAVY DKDEVFHFFNVLASHS >gi568815584r:34335204_34562207|GENSCAN_predicted_CDS_6|1311_bp atgattgttgcttccaggtaccaaggcggccgctacactccaggcctgagtctgacttcc aggcctccctttcaggtcccagactcccggccgcgcgcccacttgcgcccaaccagcccc ggagacacccaggcctgtcccacgccgtcggtaggtccccggtccgggagcgggagagac cggagcgccggggacgaccccggcaagggcgtggctaaggcaggggaaagcgcgaacgca gtcccccactaccacaaattatgcagtcgagtttcccacatttggggaaatcgcaggggt cagcacatccggagtgcaatggataagcctcgccctgggaaaaccaccttcgtgatcatg gtatctcccctgccagagcagcagatgaagggcctagacctggatccagaagctagggct ctcggtccagcattcatccactggtggacatcacatgggcttatttttaccagcgaaggt tacgtgaaggacaaaacgcactcagccagcaacggaaactcaacagttcaaacagcactg gggaacatgccgctgcaggccaccatgaaccggcttccggatgactacgacccctacgcg gttgaagagcctagcgacgaggagccggctttgagcagctctgaggatgaagtggatgtg cttttacatggaactcctgaccaaaaacgaaaactcatcagagaatgtcttaccggagaa agtgaatcatctagtgaagatgaatttgaaaaggagatggaagctgaattaaattctacc atgaaaacaatggaggacaagttatcctctctgggaactggatcttcctcaggaaatgga aaagttgcaacagctccgacaaggtactacgatgatatatattttgattctgattccgag gatgaagacagagcagtacaggtgaccaagaaaaaaaagaagaaacaacacaagattcca acaaatgacgaattactgtatgatcctgaaaaagataacagagatcaggcctgggttgat gcacagagaagggggcatgaatcatacaaaactcaatatagagcaatgtttgtaatgaat tgttctattaacaaagaggaggttctaagatataaagcctcagagaacaggaagaaaagg cgggtccataagaagatgaggtctaaccgggaagatgctgccgagaaggcagagacagat gtggaagaaatctatcacccagtcatgtgcactgaatgttccactgaagtggcagtctac gacaaggatgaagtctttcattttttcaatgttttagcaagccattcctaa