GENSCAN 1.0	Date run:  8-Nov-116	Time: 12:45:17

Sequence gi568815583r:89110288_89318694 : 208407 bp : 43.19% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   6035   6234  200  1  2   90   70   189 0.294  15.45
 1.02 Intr +  15631  15662   32  1  2   42   58    34 0.107  -6.43
 1.03 Intr +  15822  15922  101  1  2   52  127   101 0.516  10.23
 1.04 Term +  16063  16164  102  0  0  117   43    24 0.457  -0.92
 1.05 PlyA +  16347  16352    6                               1.05

 2.03 PlyA -  16604  16599    6                               1.05
 2.02 Term -  25382  25256  127  1  1  -80   38   266 0.373   2.56
 2.01 Init -  25490  25423   68  2  2   68   69    87 0.222   5.34
 2.00 Prom -  27487  27448   40                              -7.46

 3.00 Prom +  31042  31081   40                              -0.36
 3.01 Init +  39839  39849   11  1  2   72  102     6 0.666   0.02
 3.02 Intr +  41390  41565  176  2  2   83   83   128 0.820  11.38
 3.03 Intr +  45080  45247  168  0  0   54  103   234 0.782  21.42
 3.04 Intr +  65525  65708  184  0  1  107  105   211 0.619  23.55
 3.05 Intr +  72102  72222  121  0  1   99   72    39 0.923   3.90
 3.06 Intr +  73468  73549   82  0  1  101   90     8 0.789   1.51
 3.07 Intr +  75109  75229  121  2  1   62   96   211 0.765  18.85
 3.08 Intr +  77906  78016  111  2  0   91   85   125 0.999  11.99
 3.09 Intr +  80793  80862   70  0  1  108   96    99 0.980  11.88
 3.10 Intr +  82948  83032   85  0  1   96  111    24 0.999   4.89
 3.11 Intr +  84940  85132  193  2  1  102   36   286 0.637  23.35
 3.12 Intr +  85977  86145  169  0  1   63   76   128 0.560   9.05
 3.13 Term +  88592  88699  108  1  0   49   55    61 0.178  -2.59
 3.14 PlyA +  89894  89899    6                              -1.75

 4.02 PlyA -  90316  90311    6                               1.05
 4.01 Sngl -  91599  91207  393  0  0   65   41   356 0.642  22.84
 4.00 Prom -  98301  98262   40                              -5.46

 5.11 PlyA -  99607  99602    6                               1.05
 5.10 Term - 100156  99998  159  1  0  155   48   299 0.999  30.54
 5.09 Intr - 100522 100412  111  1  0   87   96   120 0.998  13.28
 5.08 Intr - 101614 101456  159  1  0   48   94   229 0.468  19.68
 5.07 Intr - 104951 104773  179  0  2  123   88   320 0.775  35.14
 5.06 Intr - 107037 106833  205  0  1   93   78   467 0.792  44.97
 5.05 Intr - 108406 108278  129  1  0  110  100   163 0.998  20.59
 5.04 Intr - 108769 108677   93  1  0   68   98    20 0.518   1.16
 5.03 Intr - 111319 111248   72  1  0   45  111    89 0.728   6.50
 5.02 Intr - 129548 129510   39  2  0   81  123    16 0.213   2.82
 5.01 Init - 131071 131069    3  1  0  113   81     0 0.167   1.80
 5.00 Prom - 131755 131716   40                              -4.06

 6.00 Prom + 139935 139974   40                              -3.36
 6.01 Init + 144474 144527   54  2  0   53  115     2 0.670   0.68
 6.02 Intr + 148417 148489   73  0  1  105   85    42 0.937   4.58
 6.03 Intr + 151314 151454  141  1  0   59   86    74 0.923   4.62
 6.04 Intr + 151534 151591   58  2  1   85  109     8 0.960   0.54
 6.05 Intr + 153616 153739  124  1  1   73   82   100 0.927   8.49
 6.06 Intr + 154235 154320   86  1  2   85   72    44 0.992   1.12
 6.07 Intr + 158112 158238  127  0  1   77   64   134 0.665  10.58
 6.08 Intr + 163090 163182   93  0  0  126   68    -4 0.446   1.56
 6.09 Intr + 163899 164017  119  2  2   43   97    26 0.192  -1.74
 6.10 Intr + 166424 166604  181  2  1   71  100    30 0.522   2.37
 6.11 Intr + 170984 171013   30  1  0  120  111     0 0.400   3.83
 6.12 Intr + 174809 174931  123  1  0  102  107    31 0.922   7.18
 6.13 Intr + 179926 179994   69  0  0   83   98    39 0.862   3.78
 6.14 Intr + 182401 182577  177  0  0   94   51    88 0.515   5.82
 6.15 Intr + 182655 182776  122  2  2   98  110   -21 0.995   0.39
 6.16 Intr + 183546 183710  165  0  0   75  110    19 0.779   1.88
 6.17 Intr + 184628 184807  180  2  0  130  111   107 0.978  16.18
 6.18 Intr + 189513 189679  167  0  2   79   94    30 0.995   2.30
 6.19 Intr + 190013 190098   86  0  2   33   94    94 0.824   4.04
 6.20 Intr + 191039 191155  117  1  0   86   79    36 0.766   3.16
 6.21 Intr + 195054 195122   69  2  0  114   75    16 0.825   2.28
 6.22 Intr + 195318 195411   94  2  1   67  110    42 0.972   3.84
 6.23 Intr + 195720 195907  188  1  2   67   73   123 0.949   8.11
 6.24 Intr + 202617 202685   69  2  0   40  103    69 0.781   2.98
 6.25 Intr + 204325 204420   96  0  0   99   92    87 0.999  10.41
 6.26 Term + 204995 205144  150  1  0   45   37   147 0.686   3.21
 6.27 PlyA + 205332 205337    6                              -3.64

 7.04 PlyA - 206053 206048    6                               1.05
 7.03 Term - 206540 206464   77  0  2   77   42    74 0.851  -0.30
 7.02 Intr - 207249 207089  161  2  2   71   84   113 0.767   8.83
 7.01 Init - 208390 208254  137  1  2   92   85   314 0.589  31.11

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815583r:89110288_89318694|GENSCAN_predicted_peptide_1|144_aa
IKMNAMLETPELPAVFDGVKLAAVAAVLYVIVRCLNLKSPTAPPDLYFQDSGLSRFLLKS
CPLLTKENCRSLKDLKKGPYYVSKKGVYVFQKEVYATTDSITWYQIQYMWTDLHGIRSTF
ILLLNVWLTENCSTIREQEMDLVF

>gi568815583r:89110288_89318694|GENSCAN_predicted_CDS_1|435_bp
atcaagatgaatgccatgctggagactcccgaactcccagccgtgtttgatggagtgaag
ctggctgcagtggctgctgtgctgtacgtgatcgtccggtgtttgaacctgaagagcccc
acagccccacctgacctctacttccaggactcggggctctcacgctttctgctcaagtcc
tgtcctcttctgaccaaagagaattgccgaagcctgaaagatctaaaaaaagggccctac
tatgtctccaaaaaaggagtatatgtcttccaaaaggaagtatatgctacaactgattcc
atcacgtggtatcaaattcagtacatgtggacggacttacatggaatcagatctactttt
atactccttctcaatgtgtggttgactgaaaattgctccactatccgggagcaggaaatg
gaccttgttttctag

>gi568815583r:89110288_89318694|GENSCAN_predicted_peptide_2|64_aa
MWNNIAADDRQPYKKKAAKLKENLLQQKKGVVKAEKSKKKKEEEEDEEDEEDKNEEEEDE
DDDE

>gi568815583r:89110288_89318694|GENSCAN_predicted_CDS_2|195_bp
atgtggaataacattgctgcagatgacaggcagccttataaaaagaaggctgcgaagctg
aaggaaaacctgctgcagcaaaaaaagggagttgtcaaggctgaaaaaagcaagaaaaag
aaggaagaggaggaagatgaggaagatgaagaggataagaatgaggaggaggaagatgaa
gatgatgatgaataa

>gi568815583r:89110288_89318694|GENSCAN_predicted_peptide_3|532_aa
MIRRYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGATSTFDLFEPLAEHC
VGDDITMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVLNHLGALPNIELTSPRMFTYGC
TWEFGAMVNYIKKTYPLTQLVVVGFSLGGNIVCKYLGETQANQEKVLCCVSVCQGYSALS
QFILVDQYLAQPGEQFLPPLLSSGEHSYLEASQELGYSGQPVCNEGGTNKSKNIPSVRRS
AKGEMNQVTLTRCGSSRAQETFMQWDQCRRFYNFLMADNMKKIILSHRQALFGDHVKKPQ
SLEDTDLSRLYTATSLMQIDDNVMRKFHGYNSLKEYYEEESCMRYLHRIYVPLMLVNAAD
DPLVHESLLTIPKSLSEKRENVMFVLPLHGGHLGFFEGSVLFPEPLTWMDKLVVEYANAI
CQWERNKLQCSDTEQVEADLEAARPAMELPSCDHSVMSQKGSGWAEHLGCALALLFTLDK
VAVDFNFFTSKMGDLDQPCVFDWLLFRVPVVIVRPLLFGGWSCDCGSCWPLE

>gi568815583r:89110288_89318694|GENSCAN_predicted_CDS_3|1599_bp
atgatcagaagatacattccaccgttgatctgggggaaaagtggacacatccagacagcc
ttgtatgggaagatgggaagggtgaggtcgccacatccttatgggcaccggaagttcatc
actatgtctgatggagccacttctacattcgacctcttcgagcccttggctgagcactgt
gttggagatgatatcaccatggtcatctgccctggaattgccaatcacagcgagaagcaa
tacatccgcactttcgttgactacgcccagaaaaatggctatcggtgcgccgtgctgaac
cacctgggtgccctgcccaacattgaattgacctcgccacgcatgttcacctatggctgc
acgtgggaatttggagccatggtgaactacatcaagaagacatatcccctgacccagctg
gtcgtcgtgggcttcagcctgggtggtaacattgtgtgcaaatacttgggggagactcag
gcaaaccaagagaaggtcctgtgctgcgtcagcgtgtgccaggggtacagtgcactgagc
cagtttatcctggtggaccaatatctggcccagcctggggagcagttcctgccacccctt
ctctcttctggagaacatagctatctagaggcaagtcaagaacttggatattcaggccag
cctgtctgcaatgaaggaggtactaacaaaagcaagaacatcccttcagttaggaggtca
gcaaagggagaaatgaaccaggtcaccctcactcgctgtggttcttccagggcccaggaa
accttcatgcaatgggatcagtgccggcggttctacaacttcctcatggctgacaacatg
aagaagatcatcctctcgcacaggcaagctctttttggagaccatgttaagaaaccccag
agcctggaagacacggacttgagccggctctacacagcaacatccctgatgcagattgat
gacaatgtgatgaggaagtttcacggctataactccctgaaggaatactatgaggaagaa
agttgcatgcggtacctgcacaggatttatgttcctctcatgctggttaatgcagctgac
gatccgttggtgcatgaaagtcttctaaccattccaaaatctctttcagagaaacgagag
aacgtcatgtttgtgctgcctctgcatgggggccacttgggcttctttgagggctctgtg
ctgttccccgagcccctgacatggatggataagctggtggtggagtacgccaacgccatt
tgccaatgggagcgtaacaagttgcagtgctctgacacggagcaggtggaggccgacctg
gaagcagcaaggccggctatggagctgccgtcgtgtgaccacagtgtgatgtctcagaag
ggctctgggtgggctgagcatctgggctgtgccctggctctgcttttcaccctggacaaa
gtcgctgtggacttcaatttcttcacctctaaaatgggggacttggaccagccctgtgtc
tttgactggcttctcttcagagtccccgttgtcatcgtaagacccttgctgtttggaggg
tggtcttgtgactgtggcagctgctggccgctggaatga

>gi568815583r:89110288_89318694|GENSCAN_predicted_peptide_4|130_aa
MRTRSPSPLAIVPRPQRASRPLLCAVSPMASASGATAKHEQILVLDPPIDLKFKGPFTDV
VTTNLKLRNPSDRKVCFKVKTTVPHRYCVRPNSGIIDPGSTVTVSVMLQPFDYDPNEKSK
HKFMVQFLLH

>gi568815583r:89110288_89318694|GENSCAN_predicted_CDS_4|393_bp
atgcgaactcgctccccctcccctctcgccatcgtcccccgcccccagcgagcaagccgc
cccctgctctgcgctgtctctccaatggcgtctgcctccggggccacggcgaagcacgag
cagatcctggtcctcgacccgcccatagacctcaaattcaaaggccccttcacagatgta
gtcactacaaatcttaaattgcgaaatccatcggatagaaaagtgtgtttcaaagtgaag
actaccgtgcctcaccggtactgtgtgaggcccaacagtggaattattgacccagggtca
actgtgactgtttcagtaatgctacagccctttgactatgatccgaatgaaaagagtaaa
cacaagtttatggtacaatttttgctccactaa

>gi568815583r:89110288_89318694|GENSCAN_predicted_peptide_5|382_aa
MRCWVRVSTTELVSRREPLELQDIQVPGSPKEELPTWQGRGRLERPGQRKQIPSFSKDSV
SSIGNMSEGVGTFRMVPEEEQELRAQLEQLTTKDHGPVFGPCSQLPRHTLQKAKDELNER
EETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLR
GYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDE
ILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPARF
KAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSDFGGTLPK
YDGKAVAEQLFGPQAQAENTAF

>gi568815583r:89110288_89318694|GENSCAN_predicted_CDS_5|1149_bp
atgcgctgctgggttagggtctccacgaccgagctggtctcgcggagggaacctctagag
ctccaggacattcaggtaccaggtagccccaaggaggagctgccgacctggcagggaagg
ggccggctggagaggccaggacagagaaagcagatcccttctttttccaaggactctgtg
tcttccataggcaacatgtcagaaggggtgggcacgttccgcatggtacctgaagaggaa
caggagctccgtgcccaactggagcagctcacaaccaaggaccatggacctgtctttggc
ccgtgcagccagctgccccgccacaccttgcagaaggccaaggatgagctgaacgagaga
gaggagacccgggaggaggcagtgcgagagctgcaggagatggtgcaggcgcaggcggcc
tcgggggaggagctggcggtggccgtggcggagagggtgcaagagaaggacagcggcttc
ttcctgcgcttcatccgcgcacggaagttcaacgtgggccgtgcctatgagctgctcaga
ggctatgtgaatttccggctgcagtaccctgagctctttgacagcctgtccccagaggct
gtccgctgcaccattgaagctggctaccctggtgtcctctctagtcgggacaagtatggc
cgagtggtcatgctcttcaacattgagaactggcaaagtcaagaaatcacctttgatgag
atcttgcaggcatattgcttcatcctggagaagctgctggagaatgaggaaactcaaatc
aatggcttctgcatcattgagaacttcaagggctttaccatgcagcaggctgctagtctc
cggacttcagatctcaggaagatggtggacatgctccaggattccttcccagcccggttc
aaagccatccacttcatccaccagccatggtacttcaccacgacctacaatgtggtcaag
cccttcttgaagagcaagctgcttgagagggtctttgtccacggggatgacctttctggt
ttctaccaggagatcgatgagaacatcctgccctctgacttcgggggcacgctgcccaag
tatgatggcaaggccgttgctgagcagctctttggcccccaggcccaagctgagaacaca
gccttctga

>gi568815583r:89110288_89318694|GENSCAN_predicted_peptide_6|985_aa
MTVPLQSSQGDKEDSVSKLTNLLQNQAVKGKVAGALLRAIFKGPLLVELANEFISAVREG
SLVNGKSLELLPIILTALATKKENLAYGKGVLSGEECKKQLINTLCSGRDVPLTAEEVEF
VVEKALSMFSKMNLQEIPPLVYQLLVLSSKGSRKSVLEGIIAFFSALDKQHNEEQSGDEL
LDVVTVPSGELRHVEGTIILHIVFAIKLDYELGRELVKHLKVGQQGDSNNNLSPFSIALL
LSVTRIQRFQDQTSVVKSFKDLQLLQGSKFLQNLVPHRSYVSTMILEVVKNSVHSWDHVT
QGLVELGFILMDSYGPKKVLDGKTIETSPSLSRMPNQHACKLGANILLETFKTVQRLLKA
VQVHVDVHSHYNSVANETFCLEIMDSLRRCLSQQADVRLMLYEGFYDVLRRNSQLANSVM
QTLLSQDYLLCCIQHCLAWYKNTVIPLQQGEEEEEEEEAFYEDLDDILESITNRMIKSEL
EDFELDKSADFSQSTSIGIKNNICAFLVMGVCEVLIEYNFSISSFSKNRFEDILSLFMCY
KKLSDILNEKAGKAKTKMANKTSDSLLSMKFVSSLLTALFRDSIQSHQESLSVLRSSNEF
MRYAVNVALQKVQQLKETGHVSGPDGQNPEKIFQNLCDITRVLLWRYTSIPTSVEESGKK
EKGKSISLLCLEGLQKIFSAVQQFYQPKIQQFLRALDVTDKEGEEREDADVSVTQRTAFQ
IRQFQRSLLNLLSSQEEDFNSKEALLLVTVLTSLSKLLEPSSPQDVEVEKTNHFAIVNLR
TAAPTVCLLVLSQAEKVLEEVDWLITKLKGQVSQETLSEEASSQATLPNQPVEKAIIMQL
GTLLTFFHELVQTALPSGSCVDTLLKDLCKMYTTLTALVRYNKSKSLNYTGEKKEKPAAV
ATAMARVLRETKPIPNLIFAIEQYEKFLIHLSKKSKVNLMQHMKLSTSRDFKIKGNILDM
VLREDGEDENEEVSAGFCLEPSHSS

>gi568815583r:89110288_89318694|GENSCAN_predicted_CDS_6|2958_bp
atgactgtgccactgcagtccagccagggtgacaaagaagactctgtctctaagttgact
aatctccttcagaatcaagcagtgaaaggaaaagttgctggagcactcctgagagccatc
ttcaaaggaccattattggttgaattagccaatgagtttattagtgctgtcagagaaggc
agcctagtgaatggaaaatctttggagttactacctatcattctcactgccctggctacg
aaaaaggaaaatctggcttatggaaaaggtgtactgagtggggaagaatgtaagaaacag
ttgattaacaccctgtgttctggcagggatgtccctctgactgcagaagaggtggaattt
gtggtggaaaaagcattgagcatgttctccaagatgaatcttcaagaaataccacctttg
gtctatcagcttctggttctctcctccaagggaagcagaaagagtgttttggaaggaatc
atagccttcttcagtgcactagataagcagcacaatgaggaacagagtggtgacgagcta
ttggatgttgtcactgtgccatcaggtgaacttcgtcatgtggaaggcaccattattcta
cacattgtgtttgccatcaaattggactatgaactaggcagagaactcgtgaaacactta
aaggtaggacagcaaggagattccaataataacttaagtcccttcagcattgctcttctt
ctgtctgtaacaagaatacaaagatttcaggaccagacttcggttgtaaagagctttaag
gatcttcaactcctccaaggctcaaaatttcttcagaatctagttcctcatagatcttat
gtttcaaccatgatcttggaagtagtgaagaatagcgttcatagctgggaccatgttact
cagggcctcgtagaacttggtttcattttgatggattcatatgggccaaagaaggttctt
gatggaaaaactattgaaaccagcccaagtctttctagaatgccaaaccagcatgcatgt
aagctcggagctaatatcctgttggaaacttttaagactgtacaaaggctgcttaaggca
gtgcaggttcatgtggatgttcacagccattacaattctgtcgccaatgaaactttttgc
cttgagatcatggatagtttgaggagatgcttaagccagcaagctgatgttcgactcatg
ctttatgaggggttttatgatgttcttcgaaggaactctcagctggctaattcagtcatg
caaactctgctctcacaggattatctgctgtgttgtattcagcattgtttggcctggtat
aagaatacagtcatacccttacagcagggagaggaggaagaggaggaggaagaggcattc
tacgaagacctagatgatatattggagtccattactaatagaatgattaagagtgagctg
gaagactttgaactggataaatcagcagatttttctcagagcaccagtattggcataaaa
aataatatctgtgcttttcttgtgatgggagtttgtgaggttttaatagaatacaatttc
tccataagtagtttcagtaagaataggtttgaggacattctgagcttatttatgtgttac
aaaaaactctctgacattcttaatgaaaaagcgggtaaagccaaaactaaaatggccaac
aagacaagtgatagtcttttgtccatgaaatttgtgtccagtcttctcactgctcttttc
agggatagtatccaaagccaccaagaaagcctttctgttctcaggtccagcaatgagttt
atgcgctatgcagtgaatgtagctctgcagaaagtacagcagctaaaggaaacagggcat
gtgagtggccctgatggccaaaacccagaaaagatctttcagaacctctgtgacataact
cgagtcttgctatggagatacacttcaattcctacttcagtggaagagtcgggaaagaaa
gagaaaggaaagagcatctcactgctgtgcttggagggtttacagaaaatattcagtgct
gtgcaacagttctatcagcccaagattcagcagtttctcagagctctggatgtcacagat
aaggaaggagaagagagagaagatgcagatgtcagtgtcactcagagaacagcattccag
atccggcaatttcagaggtccttgttgaatttacttagcagtcaagaggaagattttaat
agcaaagaagccctcctgctagtcacggttcttaccagtttgtccaagttactggagccc
tcctctcctcaggatgtagaggtggagaaaacaaaccactttgcaatagtgaatttgaga
acggctgcccccactgtctgtttacttgttctgagtcaggccgagaaggttctagaagaa
gtggactggctaatcaccaagcttaagggacaagtgagccaagaaaccttatcagaagag
gcctcttctcaggcaaccctaccaaatcagcctgttgagaaagctatcatcatgcaactg
ggaactctgcttacatttttccacgagctggtgcagacagctctgccatcaggcagctgt
gtggacaccttgttaaaggacttgtgcaaaatgtacaccacacttacagcccttgtcaga
tataataagagtaagagcctgaactatacgggagagaaaaaggagaaacctgctgccgtt
gccacagccatggccagagttcttcgggaaaccaagccaatccctaacctcatctttgcc
atagaacagtatgaaaaatttctcatccacctttctaagaagtccaaggtgaacctgatg
cagcacatgaagctcagcacctcacgagacttcaagatcaaaggaaacatcctagacatg
gttcttcgagaggatggtgaagatgaaaatgaagaggtcagtgctggcttctgtctggag
cccagccactcttcctag

>gi568815583r:89110288_89318694|GENSCAN_predicted_peptide_7|124_aa
MKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCMFAYKLGLNDLPQ
SVAFFSAVDIDRCLRKEVTMDCKTPSNPTGMERRYGIPQGEALDIYQIIELTKGSLEKRS
QPGP

>gi568815583r:89110288_89318694|GENSCAN_predicted_CDS_7|375_bp
atgaagtggctgtttgaagagtttgccatagatgggcgcttctgcatcagcatccatgac
gaggttcgctacctggtgcgggaggaggaccgctaccgcgctgccctggccttgcagatc
accaacctcttgaccaggtgcatgtttgcctacaagctgggtctgaatgacttgccccag
tcagtcgcctttttcagtgcagtcgatattgaccggtgcctcaggaaggaagtgaccatg
gattgtaaaaccccttccaacccaactgggatggaaaggagatacgggattccccagggt
gaagcgctggatatttaccagataattgaactcaccaaaggctccttggaaaaacgaagc
cagcctggaccatag