GENSCAN 1.0	Date run:  8-Nov-116	Time: 14:22:54

Sequence gi568815583r:84555273_84758152 : 202880 bp : 45.14% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.00 Prom +   1475   1514   40                              -2.46
 1.01 Init +   7153   7277  125  0  2   58   67   128 0.281   7.34
 1.02 Intr +  15156  15462  307  0  1   40  105   117 0.012   5.05
 1.03 Intr +  22676  22891  216  1  0   84  101   125 0.103  12.10
 1.04 Intr +  34946  35069  124  1  1   55   37    64 0.003  -1.84
 1.05 Intr +  45542  45726  185  0  2   86   52   116 0.078   7.31
 1.06 Term +  48710  49273  564  1  0   33   43   393 0.003  23.69
 1.07 PlyA +  51588  51593    6                               1.05

 2.00 Prom +  55526  55565   40                              -3.76
 2.01 Sngl +  65374  66768 1395  0  0   47   45  1510 0.597 138.66
 2.02 PlyA +  68423  68428    6                               1.05

 3.00 Prom +  73217  73256   40                              -7.16
 3.01 Init +  76628  77026  399  1  0   76   83   296 0.976  24.57
 3.02 Intr +  77325  77451  127  2  1  -52   91    83 0.936  -5.15
 3.03 Intr +  78552  79067  516  1  0  107   -4   675 0.545  53.13
 3.04 Intr +  82075  82148   74  2  2  135  109    14 0.813   7.33
 3.05 Intr +  83124  83205   82  2  1   63   86    54 0.867   1.91
 3.06 Term +  85883  86001  119  0  2   78   42    94 0.506   2.50
 3.07 PlyA +  86586  86591    6                               1.05

 4.10 PlyA -  87829  87824    6                               1.05
 4.09 Term -  90564  90110  455  1  2   99   44   149 0.768   6.92
 4.08 Intr -  91076  90912  165  0  0   85   86   139 0.946  13.33
 4.07 Intr -  93353  93149  205  2  1  101   84    13 0.677   0.97
 4.06 Intr -  97530  97442   89  1  2  108   88    67 0.989   8.39
 4.05 Intr -  98427  98357   71  2  2  100   19    95 0.449   2.63
 4.04 Intr - 100613 100444  170  2  2   20   25    77 0.250  -6.66
 4.03 Intr - 102076 101904  173  2  2   90   99    52 0.767   6.16
 4.02 Intr - 102270 102157  114  1  0  101    5    71 0.376   0.52
 4.01 Init - 102880 102724  157  1  1  103  131   289 0.999  32.77
 4.00 Prom - 105128 105089   40                              -2.36

 5.09 PlyA - 106961 106956    6                               1.05
 5.08 Term - 111135 111130    6  0  0  102   44     0 0.197  -5.13
 5.07 Intr - 115510 115453   58  0  1   79  116    60 0.872   6.79
 5.06 Intr - 125560 125441  120  0  0   67   98    61 0.924   4.61
 5.05 Intr - 132502 132353  150  0  0  113   53    74 0.745   5.68
 5.04 Intr - 136372 136263  110  1  2  111   92    15 0.441   3.28
 5.03 Intr - 160977 160753  225  0  0   51   99   186 0.795  14.18
 5.02 Intr - 165899 165836   64  1  1   83   99    59 0.159   5.22
 5.01 Init - 176011 175968   44  1  2   95   77    -2 0.189  -0.71
 5.00 Prom - 176700 176661   40                              -6.76

 6.00 Prom + 177000 177039   40                              -6.26
 6.01 Init + 177797 177799    3  1  0  113   22     0 0.316  -4.10
 6.02 Term + 178671 178847  177  2  0   72   43   425 0.801  34.09
 6.03 PlyA + 180513 180518    6                               1.05

 7.00 Prom + 183992 184031   40                              -4.16
 7.01 Init + 193315 193392   78  0  0   81  115   133 0.961  14.36
 7.02 Term + 193665 193751   87  2  0   77   43    58 0.322  -2.14
 7.03 PlyA + 194620 194625    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr -  14367  14233  135  1  0   33  110   129 0.925  10.14


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815583r:84555273_84758152|GENSCAN_predicted_peptide_1|506_aa
MRLQGDYDACFGHPSPALSIAPSDGSQLPCDEVPYGEAHMASLPQSRRSGPGQSREKGAR
SPGPGNRGLSWAGSPLSRDSGLFLSALALPCEAAAGRLTVMLQWSLSCRGGSWFLWKIED
NNFSLALNPDTDILLSPLAGGARKLQHIMSDEICVQVTDLYLAENNNGATGGQPNTQNSR
SLLESTYPQKAKQLMSDEKCFKVRVAHVVKDLAGDNTQPSSSLEDSAFNVPSSKQRAALT
RLQTCWYLDLGLPSHQNCTAQAVSPKPYSGDRGQVRLRADYISHNALGPASLLPPGWVPS
PPTERQNFQGRSRQPMSAAVPQEEDRQEEEVTTMILEDDSWVQEAVLQEDGPESEPFPQS
AGKGGPQEEVTRGPQGALGRLRELCRRWLRPEVHTKEQMLTMLPKEIQAWLQEHRPESSE
EAAALVEDLTQTLQDSGETQNLIGRGREHPSKVEECGVSEEEKVVSKAEWGASAIPLLCL
QAVSVFISLLVSSLCAKSAPEVLGGP

>gi568815583r:84555273_84758152|GENSCAN_predicted_CDS_1|1521_bp
atgaggctacaaggagactacgatgcctgctttggtcacccttctcctgctctttccatt
gctccctctgatggaagccagttgccatgtgatgaggtgccctatggagaggcccacatg
gcaagcctcccgcagtcccggcgatcggggccaggccagtcgcgggagaaaggtgcgcgc
tcacccggcccggggaaccggggcctctcctgggcaggttcccctttgtcccgggactcc
gggctcttcctctccgccctcgccctgccgtgtgaagccgccgctgggcgcctcaccgtg
atgttgcagtggagcctgagctgccgcggcggctcctggttcttgtggaaaatagaggac
aacaacttcagcttggccttgaaccctgacacggacattttactctcacctctggcggga
ggggcgcggaagctgcagcatatcatgagtgatgagatctgtgtacaggtgactgacctt
tacctggcagaaaataataatggggccaccggaggccagccgaacacacagaactcaaga
agcctcctggagtcaacgtatccacagaaagccaagcagctaatgtcagatgagaaatgc
tttaaggtgagagttgctcatgtagtcaaagaccttgctggtgacaatacacagccttcc
tcatccctggaggactcagcattcaacgtgccttcttcgaagcagagagcagccctcact
agactacaaacctgctggtaccttgatcttggacttcccagccaccagaactgcactgcc
caggctgtcagccccaaaccctactccggggaccgcggtcaggttcgtctccgggcggac
tacatctcccacaatgccttgggcccagcctccctcctgccgcccggctgggtgccgtct
ccaccaacagaaaggcagaatttccagggccgttctcggcagccaatgagcgcggcggtg
cctcaagaggaagatagacaggaggaggaggtcaccaccatgatcctggaggatgactcc
tgggtgcaagaagctgtgctgcaggaggatggccctgagtctgagccctttccccagagt
gctggcaagggcggcccccaggaggaggtgaccaggggaccacagggtgcactcggccgc
ctccgagagctctgccggcgctggctgagaccagaggtacacaccaaggagcagatgtta
accatgctgccaaaggaaattcaggcttggctgcaagagcatcggcctgaaagcagtgag
gaggcagcggccctggtggaagacttgacccagacccttcaggacagtggtgagacgcag
aacctcatagggagagggcgggagcacccttccaaggtagaggagtgtggtgtttcggag
gaggagaaggtggtgtccaaggcagagtggggggctagcgccatccctctgctctgtctg
caggcagtcagcgtgttcatcagccttttagtgtcctcactgtgtgcaaagtcagctcca
gaagtgctaggagggccttag

>gi568815583r:84555273_84758152|GENSCAN_predicted_peptide_2|464_aa
MFENESRKIFSEMPEGESAQHSDGESDFERDAGIQRLQGHSPGEDHGEVVSQDREVGQLI
GLQGTYLGEKPYECPQCGKTFSRKSHLITHERTHTGEKYYKCDECGKSFSDGSNFSRHQT
THTGEKPYKCRDCGKSFSRSANLITHQRIHTGEKPFQCAECGKSFSRSPNLIAHQRTHTG
EKPYSCPECGKSFGNRSSLNTHQGIHTGEKPYECKECGESFSYNSNLIRHQRIHTGEKPY
KCTDCGQRFSQSSALITHRRTHTGEKPYQCSECGKSFSRSSNLATHRRTHMVEKPYKCGV
CGKSFSQSSSLIAHQGMHTGEKPYECLTCGESFSWSSNLLKHQRIHTGEKPYKCSECGKC
FSQRSQLVVHQRTHTGEKPYKCLMCGKSFSRGSILVMHQRAHLGDKPYRCPECGKGFSWN
SVLIIHQRIHTGEKPYKCPECGKGFSNSSNFITHQRTHMKEKLY

>gi568815583r:84555273_84758152|GENSCAN_predicted_CDS_2|1395_bp
atgtttgagaatgaatcacgtaagatattctcggaaatgcctgaaggtgaaagtgctcag
cactccgatggggaaagtgactttgagagagatgctggcatccagaggctccagggacac
agcccaggtgaggaccacggggaggtggtttctcaggacagggaagttggccagctcata
ggcctgcagggcacctacctaggggagaagccctacgaatgtccccagtgtgggaagacc
ttcagccggaaatcccacctcatcacacacgagaggacccacacaggagagaaatactac
aaatgtgatgaatgtggaaaaagctttagtgatggttcaaattttagtagacaccaaacc
actcacaccggggagaagccctacaaatgcagagactgtgggaagagctttagccggagt
gccaacctcataacccaccagaggatccacacgggggaaaagcccttccagtgtgccgag
tgtggcaagagcttcagcaggagtcccaacctcattgcacatcagcgcacccacacagga
gagaaaccctactcgtgccccgagtgtggaaagagctttggcaaccgatccagccttaac
acgcatcaggggatccacactggagaaaagccctacgaatgtaaagaatgcggcgaaagc
tttagttacaactccaatctaatcagacaccagagaatccacacaggagagaaaccctac
aaatgtaccgactgtgggcagaggttcagccagagttcagccctcatcacccaccggaga
acccacacaggagagaaaccctaccagtgcagcgagtgtgggaaaagcttcagccgcagc
tctaacctggccacacaccggagaacccacatggtggagaagccctataagtgtggggtg
tgtgggaagagcttcagccagagctccagtctgattgcacaccagggcatgcacacaggg
gagaaaccctacgagtgcctgacatgtggggagagcttcagctggagctccaacctcctc
aagcaccagaggatccacacgggagagaaaccctacaaatgcagcgagtgtgggaaatgc
ttcagccagcgctcccagctcgtagtgcaccagcggacccacacgggcgagaagccctac
aaatgcctcatgtgcggcaagagcttcagccggggctccattctggtcatgcaccagaga
gcccatttgggagacaagccctacaggtgccctgagtgtgggaaaggctttagctggaac
tcagtcctcattatacatcagcgaatccacactggggagaagccctacaaatgccccgag
tgtggcaaaggcttcagcaacagctctaactttatcacacatcagagaactcacatgaaa
gagaaactttattga

>gi568815583r:84555273_84758152|GENSCAN_predicted_peptide_3|438_aa
MAVAVDQQIQTPSVQDLQIVKLEEDSHWEQEISLQGNYPGPETSCQSFWHFRYQEASRPR
EALLQLQKLCCQWLRPEKCTKEQILELLVLEQFPTVLLQEIQIWVRQQHPESGEEAVALV
EDLQKEPGRQRLENSSHSVAASQRQAASVVFVDIIEPIAKHLNYPMSFCLGFGKAASGEA
VRPHPSCSAAVAMANDSCGPGEPSSSERDRQYCELCGKMENLLRCSRSSFCCKERQRQDW
KKHKLVCQGSEGALGHGGGPHQDSGPAPPAAAPPSRDRALEARKAARRRDSASGDAAKAK
AKSAADPAAAASPPRASPGRTKAMAACYPVNGTGYVRHVDNPNGDGRPLPDVALGIPAEK
SRGGQEIVSSSQEAWRDPEPGLKNHLEITQQNSENEVTLGLPVPQPDGVTMLQKSEELWN
EDLPDFKEIQKTSSAGGK

>gi568815583r:84555273_84758152|GENSCAN_predicted_CDS_3|1317_bp
atggctgtagctgtggaccaacaaatccagactccttcagtacaagatctccaaatagtt
aaactggaagaagattcccactgggagcaggaaatttcccttcaagggaattaccctgga
ccagagacatcctgccagagcttttggcatttccgttaccaagaagcatcacgaccccga
gaggccctcctccagctccagaagctctgttgtcagtggctaaggccagagaagtgtaca
aaagagcagatcctggagttgctggtcctagaacagttcccgactgtccttctccaggag
atccagatctgggtcagacagcagcatccggagagtggagaggaggcagtggccctggtg
gaagacttgcagaaagaacctggaagacagaggctggagaacagctctcactctgtagca
gccagccagaggcaagcggcttcggtggtctttgtcgacattattgagcctattgcaaaa
cacctgaattatcctatgtctttttgcctagggtttggcaaggcagcctcgggcgaggcc
gtccggccgcacccctcctgctcagctgcggtcgccatggccaatgacagctgcgggccc
ggcgagccgagctcgagcgagcgagaccggcagtactgcgagctgtgcgggaagatggag
aacctgctgcgctgcagccgcagctccttctgctgcaaggagcgccagcgccaggactgg
aagaagcacaagctcgtgtgccagggcagcgagggcgccctcggccacggagggggccct
caccaggactccggccccgcgccgcccgctgcagcgccgccgtccagggaccgggccctg
gaggccaggaaggcagcgaggcgccgggacagcgcctccggggacgcagccaaggcaaag
gccaagtccgcggccgaccccgcggcggccgcgtccccgcctcgcgcgtccccgggccgg
acaaaagccatggctgcttgttatccggtcaatggaacgggttatgtacgtcatgttgat
aatccaaatggagacggaagacccctgcctgatgtggctctgggaattcctgcagagaag
agcaggggtggccaggagatagtgagcagctcccaggaggcatggagggatccagaacct
ggactgaagaaccacctagaaataactcagcagaattctgaaaatgaggtcacgctggga
cttccagttccccagccagatggggtcacaatgctgcagaaaagtgaagagctttggaat
gaagatctcccggacttcaaggagattcagaaaacgtccagtgcaggtgggaaatga

>gi568815583r:84555273_84758152|GENSCAN_predicted_peptide_4|532_aa
MARRAGGARMFGSLLLFALLAAGVAPLSWDLPEPRSRASKIRVHSRGNLWATGKAEGAGF
ATTQTPLWLLGEVEAPRGGRLSVFPLQERKRHFMGKKSLEPSSPSPLGTAPHTSLRDQRL
QLSHDLLGILLLKKALGVSLSRPAPQIQNQQPLRTSDVRPRSLGWLSLKGNNVTSNALGF
EALTHADQLENLRSSSAYVWGFRVRYQDFYAFDLSGATRVLEWIDDKGGVFVAGYESLKK
NEILHLKLPLRLSVKENKGLFPERDFKVRHGGFSDRSIFDLKHVPHTRYGQFCDPAIHTG
WDGMAANAWGYSASSSPFPPPQHTGTYVIKAVSTIAVHEKEESLWPRVAVFSTLAPGVLH
GARLRSLQVVDLESRKTTYTSDVSDSEELSSLQVLDADTFAFCCASGRLGLVDTRQKWAP
LENRSPGPGSGGERWCAEVGSWGQGPGPSIASLGSDGRLCLLDPRDLCHPVSSVQCPVSV
PSPDPELLRVTWAPGLKNCLAISGTAEQDFVLLSDLFLPGDCWVLRKEPPAP

>gi568815583r:84555273_84758152|GENSCAN_predicted_CDS_4|1599_bp
atggcccggcgggcggggggcgctcggatgttcggcagcctcctgctcttcgccctgctc
gctgccggcgtcgccccgctcagctgggatctcccggagccccgcagccgagccagcaag
atccgagtgcactcgcgaggcaacctctgggccaccggaaaagctgagggagcaggcttt
gccaccacccagacacctttgtggctccttggtgaggtggaagcaccaagaggaggaagg
ttaagtgtcttcccgctacaagaacggaaacgtcacttcatgggcaagaagagtctggag
ccttccagcccatccccattggggacagctccccacacctccctgagggaccagcgactg
cagctgagtcatgatctgctcggaatcctcctgctaaagaaggctctgggcgtgagcctc
agccgccccgcaccccaaatccagaaccagcagcccctgaggacctcagatgtaaggcct
aggagcttgggctggctgagtctgaagggaaacaatgtcacctctaatgcccttggtttt
gaagctctgacacatgcagaccaactagagaatctcagaagcagcagtgcctacgtctgg
ggcttcagagtgaggtaccaggatttctatgcattcgacctgtcaggagccactcgagtc
cttgaatggattgatgacaaaggtggagtctttgttgctggctatgaaagcctgaaaaag
aatgaaattcttcatctgaaattacctctcagactttctgtaaaggaaaacaagggctta
ttcccagaaagagatttcaaagtgcgccatggaggattttcagacaggtctatctttgat
ctaaagcatgtgccacataccaggtatggtcaattttgtgatccagccatccacacagga
tgggatgggatggctgcaaatgcctgggggtattctgcctcctcatctccattcccaccc
cctcagcacacaggcacatatgtcattaaagctgtcagcaccattgctgtgcatgagaaa
gaggagagtctctggcctagggtggccgtcttctccacattggcacccggagtcctccat
ggggcgaggctccgaagtctgcaggtcgttgatctggagtcccggaagaccacgtacacc
tcagatgtcagtgacagtgaggagctgagtagcctgcaggtcctagatgcagacaccttt
gccttctgctgtgcttcaggccggctggggcttgttgacacccggcagaagtgggcaccg
ttggagaatcgcagccctggccctgggtctggtggagagagatggtgtgctgaagttggg
agctggggccagggccctgggcccagcattgccagccttggctcagatgggcgtctttgt
cttcttgacccccgggatctctgccatcctgtgagctcagtccagtgcccagtatccgta
cctagccctgacccagagctgctgcgagtgacttgggccccaggcctgaagaattgcttg
gccatctcaggtactgccgagcaggatttcgtcttgttatctgatctctttcttccagga
gactgttgggtgctcaggaaggagcctccagcaccatga

>gi568815583r:84555273_84758152|GENSCAN_predicted_peptide_5|258_aa
MVSKLDKQDPRTRTWVIEDLLLLPTTSYIEKVKEKLRRGAGGGDRARPCQLPPRKRKCKH
CGVLSSVSPTRAPVVPPAGHRALSPAGVLLAVPAMLSLDFLDDVRRMNKRQLYYQVLNFG
MIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDLLFLTNRVEDPIRVGEIVVFR
IEGREIPIVHRVLKIHEKQNGHIKFLTKGDNNAVDDRGLYKQGQHWLEKKDVVGRARGFV
PYIGIVTILMNDYPKFKA

>gi568815583r:84555273_84758152|GENSCAN_predicted_CDS_5|777_bp
atggtgagcaaattggacaaacaggacccaaggactaggacatgggtcatagaggacctt
ctgcttctacccaccacttcctacattgagaaggtgaaggagaaactgcgaaggggcgcg
gggggcggggaccgtgcccgaccgtgccagctcccgccccggaagcggaagtgcaagcac
tgcggggtcctgtccagtgtgagcccgacccgagctccagtagttccgcccgctggtcat
cgcgccctttcccctgccggtgtcctgctcgccgtccccgccatgctgtctctagacttt
ttggacgatgtgcggcggatgaacaagcggcagctctattatcaagtcctaaattttgga
atgattgtctcatcggcactaatgatctggaaggggttaatggtaataactggaagtgaa
agtccgattgtagtggtgctcagtggcagcatggaacctgcatttcatagaggagatctt
ctctttctaacaaatcgagttgaagatcccatacgagtgggagaaattgttgtttttagg
atagaaggaagagagattcctatagttcaccgagtcttgaagattcatgaaaagcaaaat
gggcatatcaagtttttgaccaaaggagataataatgcggttgatgaccgaggcctctat
aaacaaggacaacattggctagagaaaaaagatgttgtggggagagccaggggatttgtt
ccttatattggaattgtgacgatcctcatgaatgactatcctaaatttaaggcttag

>gi568815583r:84555273_84758152|GENSCAN_predicted_peptide_6|59_aa
MLYNCCLYLRRRKKEEEKEKEEEKGKEKEKEKKEEEKKKKKKKKKKKKKKKKKKKKKKK

>gi568815583r:84555273_84758152|GENSCAN_predicted_CDS_6|180_bp
atgctctacaactgctgcctttaccttagaagaaggaagaaggaagaagagaaggaaaag
gaggaggagaaggggaaggagaaggagaaggagaaaaaagaagaagaaaagaagaagaag
aagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaaatag

>gi568815583r:84555273_84758152|GENSCAN_predicted_peptide_7|54_aa
MLWLPQPALGTRAAETLACSRRRRRQAGHAAVLRAGRDVRPPSAIAGGPQPGHG

>gi568815583r:84555273_84758152|GENSCAN_predicted_CDS_7|165_bp
atgttgtggctcccgcagccggcgctggggacgcgcgcggccgagactctggcctgcagt
cgccgccgccgccgccaggccgggcacgctgctgtcctccgcgctgggcgggacgtgcgg
ccgccctcggcgatagccggcggcccccagcccgggcacggataa