GENSCAN 1.0	Date run:  3-Nov-116	Time: 21:26:28

Sequence gi568815583r:66236961_66452947 : 215987 bp : 44.45% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  15506  15603   98  1  2   89   57   141 0.944  11.04
 1.02 Intr +  16092  16215  124  0  1   40   73   104 0.975   4.69
 1.03 Intr +  18139  18324  186  0  0   78   33   130 0.806   6.39
 1.04 Term +  34112  34240  129  1  0  -29   29   379 0.999  18.48
 1.05 PlyA +  34460  34465    6                               1.05

 2.03 PlyA -  34870  34865    6                               1.05
 2.02 Term -  42083  41959  125  0  2   63   55   103 0.858   3.05
 2.01 Init -  43173  43116   58  0  1   78   60    34 0.509   1.07
 2.00 Prom -  46136  46097   40                              -2.36

 3.00 Prom +  55972  56011   40                              -5.96
 3.01 Init +  56637  56775  139  2  1  103   49   245 0.974  22.40
 3.02 Intr +  58028  58181  154  0  1   85   59    44 0.888   0.33
 3.03 Intr +  69864  69992  129  0  0   79   80    74 0.962   5.51
 3.04 Intr +  71749  71884  136  1  1   90   63   116 0.961   9.87
 3.05 Intr +  74764  74940  177  0  0   59   94   104 0.917   8.22
 3.06 Intr +  77079  77157   79  2  1   39   31    71 0.569  -4.38
 3.07 Intr +  78076  78255  180  2  0   52   99   213 0.835  18.64
 3.08 Intr +  81489  81658  170  1  2   77   68    70 0.954   3.57
 3.09 Intr +  83611  83772  162  0  0  109   71    93 0.995   9.87
 3.10 Intr +  85727  85974  248  1  2   75   90   228 0.984  17.96
 3.11 Intr +  88871  89404  534  2  0   64   18   573 0.967  39.94
 3.12 Intr +  92010  92164  155  0  2  100   20   186 0.766  12.72
 3.13 Intr +  92261  92439  179  0  2   71   71    89 0.915   5.14
 3.14 Intr +  94915  95060  146  0  2   78   95    65 0.497   5.28
 3.15 Term +  96091  96352  262  1  1   29   54   136 0.450  -0.70
 3.16 PlyA +  96821  96826    6                               1.05

 4.06 PlyA -  96973  96968    6                               1.05
 4.05 Term - 100221  99998  224  1  2   62   38   181 0.975   7.58
 4.04 Intr - 104396 104190  207  0  0   85   54    60 0.642   1.35
 4.03 Intr - 112163 112100   64  2  1   84   95    29 0.964   1.49
 4.02 Intr - 112477 112355  123  1  0   82  111    41 0.821   6.58
 4.01 Init - 115881 115855   27  0  0   89   95    34 0.562   3.66
 4.00 Prom - 116689 116650   40                              -4.16

 5.08 PlyA - 117940 117935    6                               1.05
 5.07 Term - 142915 142452  464  2  2   58   41   436 0.821  31.12
 5.06 Intr - 148396 148298   99  2  0   -2  110    73 0.519   0.58
 5.05 Intr - 149852 149690  163  2  1  104   77    91 0.570   9.15
 5.04 Intr - 150460 150258  203  2  2   83   61    48 0.196   0.60
 5.03 Intr - 153591 153541   51  1  0   71   99    20 0.138   0.28
 5.02 Intr - 157389 157326   64  0  1   40   97    54 0.146  -0.21
 5.01 Init - 171357 171295   63  0  0   65   93    35 0.452   2.85
 5.00 Prom - 172904 172865   40                              -5.56

 6.00 Prom + 173068 173107   40                              -2.36
 6.01 Init + 195756 195764    9  2  0   81  116    10 0.779   3.04
 6.02 Intr + 197978 198277  300  1  0   86  113   322 0.871  31.43
 6.03 Intr + 199786 199932  147  0  0  112   80   244 0.999  26.43
 6.04 Intr + 207696 207747   52  2  1  100   94    40 0.719   4.28
 6.05 Term + 212893 214514 1622  2  2   19   49   548 0.148  34.11
 6.06 PlyA + 215325 215330    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  48743  48841   99  1  0   28   38   156 0.973   2.73


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815583r:66236961_66452947|GENSCAN_predicted_peptide_1|178_aa
MTTRETVTLASQRGLRGTDPETRLPLDGARESSKSVHGTCWGLAAAGRIAGRRRKPAASP
QALPPDPGGEGAGAPSGVGREERRGVSVPMESTLRPDTTRILIVPPLISGARNFCGTQPE
AETEVQPEAEPLLSPWEEEEEEEEDEKEEEEEEEEEEEEEEEEEEEEEEEEEENSALA

>gi568815583r:66236961_66452947|GENSCAN_predicted_CDS_1|537_bp
atgaccactcgggagacagtcacactggcctcgcagcgcgggctgcggggcaccgatccc
gagacgcggctgccgctggatggagcccgcgagtccagcaaaagcgtgcatggcacttgc
tggggcttagcggccgcggggcgcatcgccggccgccgccgaaaacctgctgcgtccccg
caggctctgcctcccgaccccggcggggaaggcgccggtgcacccagtggagtcgggcgg
gaggagagacgtggggtctccgttcccatggagtccacgctgcggcccgacaccaccagg
attctcatagttccacccctaatttctggggccagaaatttctgtggtacacaaccagaa
gcagaaacagaagtacaaccagaagcagaacctctgctcagcccctgggaagaagaagaa
gaagaggaggaggacgagaaggaggaagaggaagaggaagaagaagaagaagaggaagag
gaagaagaagaagaagaggaagaagaagaggaagaagaaaattcagcattagcttag

>gi568815583r:66236961_66452947|GENSCAN_predicted_peptide_2|60_aa
MESVASMGAKAFWKSVKNVQTAVIQFQSHFLNCRLVVSTCMCSSLYSCPKDSTPVPDRIY

>gi568815583r:66236961_66452947|GENSCAN_predicted_CDS_2|183_bp
atggagagtgttgcctcaatgggggctaaagccttttggaagtcagtgaagaatgttcag
acagcagtgatccagttccagtcccacttcctcaactgccggctggtggtttccacctgc
atgtgctcatctctttactcatgccctaaggactcaacaccagtgcctgataggatctac
tga

>gi568815583r:66236961_66452947|GENSCAN_predicted_peptide_3|949_aa
MLQKREKVLLLRTFQGRTLRIVREHYLRPCVPCHSPLCPQPAACSHDGKLLSSDVTHYVI
PDWKVVQDYLEILEFPELKGIIFMQTACQAVQHQRGRRQYNKLRNLLKDARHDCILFANE
FQQCCYLPRERGESMEKWQTRSIYNAAVWYYHHCQDRMPIVMVTEDEEAIQQYGSETEGV
FVITFKNYLDNFWPDLKAAHELCDSILQSRRERENESQESHGKEYPEHLPLEVLEAGIKS
GRYIQGILNVNKHRAQIEAFVRLQGASSKDSDLVSDILIHGMKARNRSIHGDVVVVELLP
KNEWKGRTVALCENDCDDKASGESPSEPMPTGRVVGILQKNWRDYVVTFPSKEEVQSQGK
NAQKILVTPWDYRIPKIRISTQQAETLQDFRVVVRIDSWESTSVYPNGHFVRVLGRIGDL
EGEIATILVENSISVIPFSEAQMCEMPVNTPESPWKVSPEEEQKRKDLRKSHLVFSIDPK
GCEDVDDTLSVRTLNNGNLELGVHIADVTHFVAPNSYIDIEARTRYAVSIMWELDKASYE
IKKVWYGRTIIRSAYKLFYEAAQELLDGNLSVVDDIPEFKDLDEKSRQAKLEELVWAIGK
LTDIARHVRAKRDGCGALELEGVEVCVQLDDKKNIHDLIPKQPLEVHETVAECMILANHW
VAKKIWESFPHQALLRQHPPPHQEFFSELRECAKAKGFFIDTRSNKTLADSLDNANDPHD
PIVNRLLRSMATQAMSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIVVHRLL
MAAISKDKKMEIKGNLFSNKDLEELCRHINNRNQAAQHSQKQSTELFQCMYFKDKDPATE
ERCISDGVIYSIRTNGVLLFIPRLEIISNKPYKIPNTELIHQSSPLLKSELVKEVTKSVE
EAQLAQEVKVNIIQEEYQEYRQTKGRSLYTLLEEIRDLALLDVSNNYGI

>gi568815583r:66236961_66452947|GENSCAN_predicted_CDS_3|2850_bp
atgctgcagaagcgggagaaggtgctgctgctgaggaccttccagggccgcacgctgcgg
atcgtgcgcgagcactacctgcggccctgcgtgccctgccacagcccgctctgcccgcag
cccgccgcctgcagccacgatgggaaactcttgtctagtgatgtgactcattacgtgatc
ccagactggaaagttgttcaagattatcttgagatccttgagtttcctgagttgaaggga
attattttcatgcagacagcttgtcaagctgtgcagcatcaaagaggcaggagacagtat
aacaaactgcgaaacctgctgaaggatgcgcgtcatgattgcattctctttgctaatgaa
ttccagcaatgctgctatctgccacgggaaagaggagagtccatggagaagtggcagacc
aggagcatatacaacgcagctgtttggtactatcatcactgccaggacaggatgccaatt
gttatggtgacagaagatgaagaggcaattcagcagtatggaagtgaaacagaaggagta
ttcgtgattactttcaagaattacctggacaatttctggcctgatttaaaagctgcccac
gagctttgtgattctatccttcagtctcgacgggagagagagaatgagagtcaggagagc
catgggaaggagtacccagaacatcttcccctggaagtgttagaagctgggattaaatct
ggacgctatatccagggaattctgaatgtcaacaaacacagagcccaaatagaagctttt
gttcgacttcaaggagccagcagtaaagattcagatttagtcagtgacatcctaatccac
gggatgaaggctcgaaaccgctcaattcatggagatgtggtagttgtggagctgcttcct
aaaaatgaatggaaaggaagaaccgtagccctgtgtgagaatgactgtgacgacaaggct
tcgggcgagtccccaagtgagcccatgcctacaggtcgagtggtgggcatacttcagaag
aactggcgggattatgtggtgacatttccgtccaaagaagaggtccaatctcagggcaaa
aatgctcagaaaatcctggttacaccttgggattacagaattcccaaaattcgaattagc
actcagcaagcagaaaccctccaggacttcagggtggtcgtgcgcatcgattcctgggag
tcaacatctgtgtatccaaatggacattttgtgcgtgttttaggaagaatcggagatctg
gaaggggaaattgcaaccatcctggtggaaaacagtatttcagttattcctttctcagaa
gctcagatgtgtgagatgccagtaaacacaccagaaagtccctggaaggtgagtcctgaa
gaggaacaaaaacgtaaagacttgaggaaaagccatctcgtattcagcattgaccccaaa
ggttgtgaagatgtggatgacacactctcagtcagaaccttaaataatggcaacctggaa
cttggggtccacatcgcagatgtaacacactttgtggcaccaaattcttacattgatatt
gaagctagaacaaggtatgctgtaagcatcatgtgggaactggataaagcctcttatgaa
attaagaaagtgtggtatggcagaaccattattcgatcagcatacaaactgttctatgaa
gcagcccaagaactactggatggaaacttaagcgttgttgatgatattccagaattcaaa
gacttggatgagaagagcagacaagccaagctggaggagttggtgtgggcaattggaaag
ctgaccgacatagctcgccatgtcagagctaaacgagacggatgtggtgccctggaactg
gaaggggtagaggtttgcgtacagctagatgacaaaaagaacattcacgacctcatcccc
aagcagcccctggaagtccacgagacagtggctgaatgcatgatcctggccaaccactgg
gtcgccaaaaagatctgggagagcttccctcatcaggccttgctgcgccagcaccctcct
ccacaccaggagttcttttcagaactccgggaatgtgctaaagccaaaggcttcttcata
gatacacggtccaataaaacactggctgattctctggataatgcgaacgacccccacgat
cccattgtgaacaggctactgcgctccatggccacgcaggccatgtcgaatgctctgtac
ttctccaccggatcctgtgcggaggaggagttccatcattacggtcttgcattagataaa
tatacccactttacttctccaataagaagatattcagatattgtagtacaccgcttgtta
atggcagccatttcaaaagataagaaaatggaaattaagggaaatctgttcagcaacaaa
gatcttgaggaattatgcagacatatcaacaacagaaaccaagcagcacagcattctcag
aagcagtctactgagctcttccagtgcatgtacttcaaagacaaagaccctgccaccgag
gagcgttgcatatctgacggagttatttattcaattagaacaaatggtgtgcttctattt
ataccaagacttgaaataattagtaacaaaccatacaagataccaaatacagaacttatt
catcagagttcccccttgctgaagagtgagttagtgaaagaagtaactaaatctgtggaa
gaagctcagcttgcccaagaagtcaaagtaaacatcattcaggaggaatatcaagaatat
cgccaaacaaagggaaggagcctatacacacttctagaggagatacgggacctagctctc
ctggatgtttcaaacaattatggaatatga

>gi568815583r:66236961_66452947|GENSCAN_predicted_peptide_4|214_aa
MVKELSLMKAEDLKMLIRHMEHWAHRLFPKLQFEDFIDRVEYLGSKKEVQTCLKRIRLDL
PILHEDFVSNNDEVAENNEHDVTSTELDPFLTNLSESEMFASELSRSLTEEQQQRIERNK
QLALERRQAKLLSNSQTLGNDMLMNTPRAHTVEEVNTDEDQKEESNGLNEDILDNPCNDA
IANTLNEEETLLDQSFKNVQQQLDATSRNITEAR

>gi568815583r:66236961_66452947|GENSCAN_predicted_CDS_4|645_bp
atggtgaaggaactgagcctgatgaaggctgaagacttgaagatgctaatcagacacatg
gagcactgggcacataggctattccctaaactgcagtttgaggattttattgacagagtt
gaatacctgggaagtaaaaaggaagttcagacctgtttaaaacgaattcgacttgatctc
cctattttacatgaagattttgttagcaataatgatgaagttgcggagaataatgaacat
gatgtcacttctactgaattagatccctttctgacaaacttatctgaaagtgagatgttt
gcttctgagttaagtagaagcctaacagaagagcaacaacaaagaattgagagaaataaa
caactggccttggaaagaaggcaggcaaagctgctgagtaatagtcagaccctaggaaat
gatatgttaatgaatacacccagggcacacacggttgaagaggttaatactgatgaggat
caaaaggaggagtcaaatggattaaacgaagacattctggacaatccatgtaatgatgct
attgccaatactttaaatgaagaggaaacactgctggaccagtcttttaaaaatgtgcaa
cagcaacttgatgctacatccagaaatattactgaagctagataa

>gi568815583r:66236961_66452947|GENSCAN_predicted_peptide_5|368_aa
MPGVVSILSLLDKEQLKSPVTMCVPYKPGRTADAMNYTLNAISPVLPNSISELGKGYVRE
LVPLTAEPSGAGFSWMGVGFFLGILDPGNALPTPGGGQHLSLPPAALPRARCAGPSPGRG
PRGCLQRTTNGGKPRRQMTRKYVTGARRTAWGRGPSRTPWRPLSPRGKQVDPAEKKSVSL
CVSKTLGVQNKGNVYRTKETSTPGYPQPGVGDLAENVNITLKGHTVIVNGPRGTLRRDFN
HINVELSLLGKKKKEALVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAYF
PIIVVIPENGSVVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELIFEGNDIELVSNSAA
LIQQATTV

>gi568815583r:66236961_66452947|GENSCAN_predicted_CDS_5|1107_bp
atgcccggtgttgtctctattctaagtctgttggataaagagcagctgaagagccccgtc
actatgtgtgttccttacaaacctggcagaactgctgatgctatgaactacaccctgaat
gcaataagtcccgtattacccaactccatctctgaactgggtaagggctatgttagagag
ctggtcccgttaactgcagagccgtcgggggccgggttcagctggatgggcgtcggcttc
ttcttgggcattttggacccgggtaacgcgcttccaactccggggggagggcagcacctc
tcgcttcctcccgctgcgctgccccgcgcccgctgcgcaggaccaagtccgggccgcggg
ccccggggctgccttcagcggacaaccaatgggggcaagcctcggcggcagatgacgcgg
aaatacgtcacgggagcgcggcgcactgcctgggggcggggtccgtcgcggacgccgtgg
cgccctctgtcgccccgaggcaagcaggtggacccagctgagaagaagtctgtgtcgctg
tgtgtgtcaaagacattaggtgtacagaacaaaggaaacgtgtacagaacaaaggaaaca
tctacacctggttatccacagccaggtgttggtgacctagcagaaaatgtcaacattact
ctgaagggacacacagttatcgtgaatggccccagaggaaccctgcggagggacttcaat
cacatcaatgtagaactcagtcttcttggaaagaaaaaaaaagaggctctggttgacaaa
tggtggggtaacagaaaagaactggctaccgttcggactatttgtagtcatgtacagaac
atgatcaagggtgttacactgggcttccgttacaagatgaggtctgtgtatgcttacttc
cccatcatcgtcgttatcccggagaatgggtctgttgttgaaatccgaaatttcttgggt
gaaaaatacatccgcagggtgcggatgagaccaggtgttgcttgttcagtatctcaagcc
cagaaagatgaattaatctttgaaggaaatgacattgagcttgtttcaaattcagcggct
ttgattcagcaagccacaacagtttaa

>gi568815583r:66236961_66452947|GENSCAN_predicted_peptide_6|709_aa
MVKTWSFLSMIGVLLWVDFSGDSIDLCSPLWNRTNLEALQKKLEELELDEQQRKRLEAFL
TQKQKVGELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRE
LQVLHECNSPYIVGFYGAFYSDGEISICMEHMVIKGLTYLREKHKIMHRAWTTRAKLSKI
LNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRAKDKNHMIISIDAE
KAFDKIQQPFMLKTLNKLGIDGTYFKIIRAIYDIPTANIIPNGQKLEAFPLKTGTRQGCP
LSPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQNLLKLI
SNFSKVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDVKDLFK
ENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMTFFTELEK
TTLKFIWNQKRARIAKSILSQKNKAGGITLPDFKLYYKATVTKTAWYWYQNRDIDQWNRT
EPSEIMPHIYNYLIFDKPEKNKQWGKDSLFNKWCWENWLAICRKLKLDPFLTPYTKINSR
WIKDLNVRPKTIKTLEENLGITIQDIGVGKDFMSKTPKAMATKAKIDKWDLIKLKSFCTA
KETTIRVNRQPTTWEKIFATYSSDKGLISRIYNELKQIYKKKTTPSKSG

>gi568815583r:66236961_66452947|GENSCAN_predicted_CDS_6|2130_bp
atggttaagacctggagctttctttccatgataggagtacttctttgggttgacttctct
ggtgacagtattgacttgtgctccccactttggaacaggaccaacttggaggccttgcag
aagaagctggaggagctagagcttgatgagcagcagcgaaagcgccttgaggcctttctt
acccagaagcagaaggtgggagaactgaaggatgacgactttgagaagatcagtgagctg
ggggctggcaatggcggtgtggtgttcaaggtctcccacaagccttctggcctggtcatg
gccagaaagctaattcatctggagatcaaacccgcaatccggaaccagatcataagggag
ctgcaggttctgcatgagtgcaactctccgtacatcgtgggcttctatggtgcgttctac
agcgatggcgagatcagtatctgcatggagcacatggtaataaaaggcctgacatatctg
agggagaagcacaagatcatgcacagagcctggacaacaagagcaaaactgtcaaaaatc
ctcaataaaatactggcaaaccgaatccagcagcacatcaaaaagcttatccaccatgat
caagtgggcttcatccctgggatgcaaggctggttcaatatacgcaaatcaataaatgta
atccagcatataaacagagccaaagacaaaaaccacatgattatctcaatagatgcagaa
aaagcctttgacaaaattcaacaacccttcatgctaaaaactctcaataaattaggtatt
gatgggacgtatttcaaaataataagagctatctatgacatacccacagccaatatcata
ccgaatgggcaaaaactggaagcattccctttgaaaactggcacaagacagggatgccct
ctctcaccactcctattcaacatagtgttggaagttctggccagggcaatcaggcaggag
aaggaaataaagggtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagac
gacatgattgtttatctagaaaaccccatcgtctcagcccaaaatctccttaagctgata
agcaacttcagcaaagtctcaggatacaaaatcaatgtacaaaaatcacaagcattctta
tacaccaacaacagacaaacagagagccaaatcatgagtgaactcccattcacaattgct
tcaaagagaataaaatacctaggaatccaacttacaagggatgtgaaggacctcttcaag
gagaactacaaaccactgctcaaggaaataaaagaggacacaaacaaatggaagaacatt
ccatgctcatgggtaggaagaatcaatatcgtgaaaatggccatactgcccaaggtaatt
tacagattcaatgccatccccatcaagctaccaatgactttcttcacagaattggaaaaa
actactttaaagttcatatggaaccaaaaaagagcccgcatcgccaagtcaatcctaagc
caaaagaacaaagctggaggcatcacactacctgacttcaaactatactacaaggctaca
gtaaccaaaacagcatggtactggtaccaaaacagagatatagatcaatggaacagaaca
gagccctcagaaataatgccacatatctacaactatctgatctttgacaaacctgagaaa
aacaagcaatggggaaaggattccctatttaataaatggtgctgggaaaactggctagcc
atatgtagaaagctgaaactggatcccttccttacaccttatacaaaaatcaattcaaga
tggattaaagatttaaacgttagacctaaaaccataaaaaccctagaagaaaacctaggc
attaccattcaggacataggcgtgggcaaggacttcatgtccaaaacaccaaaagcaatg
gcaacaaaagccaaaattgacaaatgggatctaattaaactcaagagcttctgcacagca
aaagaaactaccatcagagtgaacaggcaacctacaacatgggagaaaattttcgcaacc
tactcatctgacaaagggctaatatccagaatctacaatgaactcaaacaaatttacaag
aaaaaaacaaccccatcaaaaagtgggtga