GENSCAN 1.0	Date run:  4-Nov-116	Time: 08:15:39

Sequence gi568815583r:59542136_59752277 : 210142 bp : 41.71% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   1263   1386  124  2  1   73  121    63 0.890   8.48
 1.02 Intr +   2912   3062  151  0  1   46   61    96 0.619   1.00
 1.03 Intr +   5977   6093  117  1  0   36   72   111 0.758   2.96
 1.04 Intr +   9890  10093  204  2  0   38   77   117 0.523   2.99
 1.05 Term +  10748  11006  259  2  1   46   35   172 0.378   1.74
 1.06 PlyA +  13394  13399    6                               1.05

 2.03 PlyA -  16799  16794    6                               1.05
 2.02 Term -  27207  27052  156  0  0   64   42   104 0.480   0.35
 2.01 Init -  33242  33123  120  2  0   21  110    71 0.320   2.84
 2.00 Prom -  37632  37593   40                              -3.65

 3.00 Prom +  49733  49772   40                              -4.35
 3.01 Init +  53978  54114  137  1  2   76   79    93 0.915   6.86
 3.02 Intr +  54183  54219   37  0  1   85   85    50 0.615   1.75
 3.03 Term +  54264  54317   54  2  0  113   49    15 0.482  -3.32
 3.04 PlyA +  56689  56694    6                               1.05

 4.00 Prom +  57175  57214   40                              -2.95
 4.01 Init +  67766  67818   53  1  2   92   42   103 0.591   6.78
 4.02 Intr +  71853  71970  118  0  1   43  100    50 0.359   1.25
 4.03 Term +  72082  72264  183  0  0   44   48   142 0.376   2.36
 4.04 PlyA +  72799  72804    6                               1.05

 5.00 Prom +  75111  75150   40                              -6.95
 5.01 Sngl +  76104  77420 1317  2  0   80   53  1017 0.999  91.21
 5.02 PlyA +  77852  77857    6                               1.05

 6.03 PlyA -  79877  79872    6                               1.05
 6.02 Term -  86098  86013   86  2  2   55   41   115 0.421   0.34
 6.01 Init -  91043  90965   79  2  1   56  100    72 0.343   6.47
 6.00 Prom -  93106  93067   40                              -5.65

 7.10 PlyA -  93146  93141    6                               1.05
 7.09 Term -  93373  93243  131  2  2   14   41   153 0.439   0.56
 7.08 Intr - 100107 100001  107  2  2   19  106    70 0.048   0.84
 7.07 Intr - 115181 114958  224  2  2  -20   76   259 0.209   9.90
 7.06 Intr - 118902 118830   73  2  1   66   95    73 0.973   4.29
 7.05 Intr - 121985 121938   48  1  0   59   98    88 0.756   3.78
 7.04 Intr - 130604 130502  103  0  1  107   97    58 0.970   6.91
 7.03 Intr - 135952 135776  177  2  0   63   78   166 0.996  12.07
 7.02 Intr - 137633 137457  177  0  0   87   94   161 0.998  15.57
 7.01 Init - 138190 138106   85  1  1   36   99   123 0.567   9.23
 7.00 Prom - 138822 138783   40                              -6.55

 8.00 Prom + 140248 140287   40                              -8.25
 8.01 Init + 141854 141981  128  1  2   68   92    52 0.188   3.28
 8.02 Intr + 146686 146876  191  1  2   32   55   132 0.231   2.61
 8.03 Intr + 146942 147183  242  0  2   31   42   321 0.387  18.15
 8.04 Intr + 159722 159766   45  1  0   99   87    34 0.427   2.09
 8.05 Intr + 163982 164171  190  1  1   54   53   155 0.639   6.84
 8.06 Term + 168041 168108   68  0  2  101   44    47 0.601  -1.28
 8.07 PlyA + 168713 168718    6                               1.05

 9.00 Prom + 173226 173265   40                              -7.65
 9.01 Init + 174595 174654   60  0  0   47  100    39 0.419   1.88
 9.02 Intr + 180520 180669  150  0  0  104   80    81 0.628   8.34
 9.03 Intr + 183294 183394  101  2  2   40   80    67 0.493  -0.91
 9.04 Term + 186316 186622  307  1  1   90   39   125 0.495   1.40
 9.05 PlyA + 186729 186734    6                               1.05

10.00 Prom + 187421 187460   40                              -1.55
10.01 Init + 189575 189622   48  1  0   61   82    50 0.530   2.93
10.02 Term + 193935 194042  108  2  0  109   54    48 0.522   1.03
10.03 PlyA + 195478 195483    6                               1.05

11.03 PlyA - 197574 197569    6                               1.05
11.02 Term - 199936 199763  174  1  0   57   40    75 0.083  -3.62
11.01 Intr - 204890 204647  244  1  1   74  103   197 0.971  16.38

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815583r:59542136_59752277|GENSCAN_predicted_peptide_1|284_aa
MVSPEETGKNRGALPKCLNPGGAAPRKREGTNCAVPRAGQEETFWTSSGSTFGLTGKSES
TAVKCAGETVGCPHGSLVNSYGAGQRQPTRIDNYKGEVGDRKEKKSGPIHKAIRSHKQMV
HFQTKSLVEAGHVFYSVLYSVHIDENFSRIKFKGVELINEKCANRAAPRITGDSQRPQGF
HVVEDLLTKRNGIQKLEVSMLGDTADSSSLAVVTLVGRSFLNSTHSLDVYNITFLIDSHI
CGQRNDSMFSKRTREHISDASPLSLCVGHFGELLEDGGSRRKAP

>gi568815583r:59542136_59752277|GENSCAN_predicted_CDS_1|855_bp
atggttagcccggaagagacaggaaagaacagaggagctctgcccaagtgccttaaccct
ggaggggctgcgccgaggaagagggaggggaccaactgtgcggttccaagggcaggacag
gaagagacgttttggacttcctcaggcagtacctttggactgacaggcaagtcagaaagc
acagcagtcaagtgtgctggagagacagtggggtgcccacatgggtccttggtcaactca
tatggagcagggcaaaggcaaccaacacgaattgataattacaagggtgaagttggagac
agaaaggaaaagaaatcggggcccatacacaaagccatacgttcacacaaacaaatggtg
cacttccaaacaaaatccctggtggaggctggccacgttttttattccgttttgtattct
gtccatattgatgaaaacttcagccgaattaaatttaaaggagttgaattgatcaatgaa
aaatgtgcgaatcgagcagcccccagaatcacaggagattcacagagaccccagggcttc
cacgtggtggaagatttattgacaaagagaaatggcatacagaaattggaagtgagcatg
ctgggggacacggcagactcttccagtttagccgtggtaacacttgtggggcgttccttt
ttgaacagtacccattcccttgatgtctacaatatcacctttcttatagattcacatata
tgtggccaaaggaacgactccatgttttctaaaaggactagagaacatatatcggatgcc
tctcctctttccctttgtgttggtcattttggcgaattactggaagatggcggttcccgc
cgaaaggcgccttag

>gi568815583r:59542136_59752277|GENSCAN_predicted_peptide_2|91_aa
MVHRVSEAQRPRKESLDPVEGPAKEARKSHLNACPISKDRVFLKLQDFSGGIMLPTQRAF
RAHFLSRSNRHELYRRALKYLQLSDKEWASP

>gi568815583r:59542136_59752277|GENSCAN_predicted_CDS_2|276_bp
atggtccacagagtttctgaagcacaaaggccgagaaaggaatccctggacccagttgag
ggtccagcaaaagaggcaaggaagagccatttaaatgcgtgccccatttccaaagacagg
gttttcctcaagttacaggatttcagtggtggcattatgctccctacccaaagggccttc
agggcccattttctgagtcgaagtaacagacatgaactctacagaagagctttgaagtac
ttgcaactgtccgataaagaatgggcttccccctaa

>gi568815583r:59542136_59752277|GENSCAN_predicted_peptide_3|75_aa
MGSSPQPGQTPAAVPEPPGQGYRRKHCSKTKLISDELELYYMTAGRERREEAHDWLLQKG
RLSAQAQHKVSVIHA

>gi568815583r:59542136_59752277|GENSCAN_predicted_CDS_3|228_bp
atgggctctagtccacaaccaggccagactccagctgctgttccagagccccctgggcag
ggctatcgcaggaaacactgctcaaagacaaagctcatctctgatgagctggaattatat
tatatgacagccggaagggagagaagagaagaggcccatgactggctcctacagaaaggt
agactgtctgcccaggcccagcacaaggtgtcagtgatccatgcctga

>gi568815583r:59542136_59752277|GENSCAN_predicted_peptide_4|117_aa
MAVAALCFRGAEQQQGQLLGDSETLSLKNTYTNKSPQLFKVLSLTEGIYNAVFMGMKRFY
TQQWKVTENPSTAENSLWSRAHVGVQMTLLPERGPDPDPNRGFLDLAQERIQGESVK

>gi568815583r:59542136_59752277|GENSCAN_predicted_CDS_4|354_bp
atggccgtggctgccctttgcttccgtggtgctgagcagcagcaggggcagctcctgggt
gacagcgagaccctgtctctgaaaaacacatacacaaacaaaagccctcaactattcaag
gtgttgtctcttactgagggaatctataatgcagtttttatgggaatgaagagattttat
actcaacaatggaaagtcactgagaatcccagtaccgcagaaaacagcctgtggagcagg
gcccacgtaggggtgcagatgaccctgttaccagaaaggggtcccgatccagaccccaac
agagggttcttggatcttgcgcaagaaagaattcagggcgagtccgtaaagtga

>gi568815583r:59542136_59752277|GENSCAN_predicted_peptide_5|438_aa
MVQWKRLCQLHYLWALGCYMLLATVALKLSFRLKCDSDHLGLESRESQSQYCRNILYNFL
KLPAKRSINCSGVTRGDQEAVLQAILNNLEVKKKREPFTDTHYLSLTRDCEHFKAERKFI
QFPLSKEEVEFPIAYSMVIHEKIENFERLLRAVYAPQNIYCVHVDEKSPETFKEAVKAII
SCFPNVFIASKLVRVVYASWSRVQADLNCMEDLLQSSVPWKYFLNTCGTDFPIKSNAEMV
QALKMLNGRNSMESEVPPKHKETRWKYHFEVVRDTLHLTNKKKDPPPYNLTMFTGNAYIV
ASRDFVQHVLKNPKSQQLIEWVKDTYSPDEHLWATLQRARWMPGSVPNHPKYDISDMTSI
ARLVKWQGHEGDIDKGAPYAPCSGIHQRAICVYGAGDLNWMLQNHHLLANKFDPKVDDNA
LQCLEEYLRYKAIYGTEL

>gi568815583r:59542136_59752277|GENSCAN_predicted_CDS_5|1317_bp
atggttcaatggaagagactctgccagctgcattacttgtgggctctgggctgctatatg
ctgctggccactgtggctctgaaactttctttcaggttgaagtgtgactctgaccacttg
ggtctggagtccagggaatctcaaagccagtactgtaggaatatcttgtataatttcctg
aaacttccagcaaagaggtctatcaactgttcaggggtcacccgaggggaccaagaggca
gtgcttcaggctattctgaataacctggaggtcaagaagaagcgagagcctttcacagac
acccactacctctccctcaccagagactgtgagcacttcaaggctgaaaggaagttcata
cagttcccactgagcaaagaagaggtggagttccctattgcatactctatggtgattcat
gagaagattgaaaactttgaaaggctactgcgagctgtgtatgcccctcagaacatatac
tgtgtccatgtggatgagaagtccccagaaactttcaaagaggcggtcaaagcaattatt
tcttgcttcccaaatgtcttcatagccagtaagctggttcgggtggtttatgcctcctgg
tccagggtgcaagctgacctcaactgcatggaagacttgctccagagctcagtgccgtgg
aaatacttcctgaatacatgtgggacggactttcctataaagagcaatgcagagatggtc
caggctctcaagatgttgaatgggaggaatagcatggagtcagaggtacctcctaagcac
aaagaaacccgctggaaatatcactttgaggtagtgagagacacattacacctaaccaac
aagaagaaggatcctcccccttataatttaactatgtttacagggaatgcgtacattgtg
gcttcccgagatttcgtccaacatgttttgaagaaccctaaatcccaacaactgattgaa
tgggtaaaagacacttatagcccagatgaacacctctgggccacccttcagcgtgcacgg
tggatgcctggctctgttcccaaccaccccaagtacgacatctcagacatgacttctatt
gccaggctggtcaagtggcagggtcatgagggagacatcgataagggtgctccttatgct
ccctgctctggaatccaccagcgggctatctgcgtttatggggctggggacttgaattgg
atgcttcaaaaccatcacctgttggccaacaagtttgacccaaaggtagatgataatgct
cttcagtgcttagaagaatacctacgttataaggccatctatgggactgaactttga

>gi568815583r:59542136_59752277|GENSCAN_predicted_peptide_6|54_aa
MEAISKLQAQGKEIETEPGSLAELRKVPPPSATTTLDQSAAINIETRPTSAKRS

>gi568815583r:59542136_59752277|GENSCAN_predicted_CDS_6|165_bp
atggaggcaatatccaagctgcaggcacagggaaaggaaatagaaacagaacctggcagt
cttgcggagttgaggaaagtgcccccaccttcagcaaccaccacccttgaccagtcagca
gccatcaacattgagacaagacctacatcagcaaaaagatcatga

>gi568815583r:59542136_59752277|GENSCAN_predicted_peptide_7|374_aa
MPVSSRPLPEDDSIEADILAITGPEDQPGSLEVNGNKVRKKLMAPDISLTLDPSDGSVLS
DDLDESGEIDLDGLDTPSENSNEFEWEDDLPKPKTTEVIRKGSITEYTAAEEKEDGRRWR
MFRIGEQDHRVDMKAIEPYKKVISHGGYYGDGLNAIVVFAVCFMPESSQPNYRYLMDNLF
KVDQELNGKQDEPKNEQEVPYVTADGNISCMQQENLQAIRKSLRALRSWDLPVTDRCRQG
PAAGTGEGRRGGGDGRVPWREARRSRGAHRTHLGEVFSPPPYFQPGECLKASTSALFCDN
VWTFVLNDVEFREVTELIKVDKVKIVACDGKKLTGQDANPWSHDEVHRSEPFKAEWNLND
DLMTSTSSFSAQEN

>gi568815583r:59542136_59752277|GENSCAN_predicted_CDS_7|1125_bp
atgcctgtgtcttctagacctttaccagaagatgatagtattgaagcagatatactagct
ataactggaccagaggaccagcctggctcactagaagttaatggaaataaagtgagaaag
aaactaatggctccagacattagcctgacactggatcctagtgatggctctgtattgtca
gatgatttggatgaaagtggggagattgacttagatggcttagacacaccgtcagagaat
agtaatgagtttgagtgggaagatgatcttccaaaacccaagactactgaagtaattagg
aaaggctcaattactgaatacacagcagcagaggaaaaagaagatggacgacgctggcgt
atgttcaggattggagaacaggaccacagggttgatatgaaggcaattgaaccctataaa
aaagttatcagccatgggggatattatggggatggattaaatgccattgttgtgtttgct
gtctgtttcatgcctgaaagtagtcagcctaactatagatacctgatggacaatcttttt
aaagttgatcaagaacttaatggaaaacaagatgaaccgaaaaatgaacaggaagtacca
tatgtgactgctgatggtaacatttcttgtatgcagcaggaaaacctgcaggctatacgc
aagtctctgagggcccttcgctcctgggatctgcccgttaccgaccgttgccggcaaggc
cccgcggccggcaccggagaagggcggcgaggcggcggtgatggtcgcgtcccgtggcgg
gaggctcgtcgttcacggggcgcccacagaacccacctaggggaggtcttcagcccacca
ccgtattttcagccaggtgaatgtcttaaagcatccactagcgccctattctgcgataat
gtgtggacttttgtactgaatgatgttgaattcagagaggtgacagaacttattaaagtg
gataaagtgaaaattgtagcctgtgatggtaaaaaacttactggccaagatgccaaccca
tggtcacatgatgaggttcacagatcagaacctttcaaagctgaatggaacctcaacgat
gatctaatgacttcaacctcctctttcagtgcacaggaaaattaa

>gi568815583r:59542136_59752277|GENSCAN_predicted_peptide_8|287_aa
MSYSYLICYVNIQKMHKVTKKKALCSVMTKLQWKYPEVLDFTRVKGWGSGGGARFHPEHN
YQKRKSDGVGGQTAKYKQDPSQGRGPKQGGDPGSTSRAGSMAPPTKGRFPVQLRSHRAEF
SQAALTPEEALAPSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASA
AAADPDTDYSTIHWINCVDPTKDLSSGCYMASKRVEEKRMLSVGAKTKLEILVHICINML
SGLGSPSYRRPLHHPEHRLLKYFWPDLGCIPQLQPHPLQGSEQIGLI

>gi568815583r:59542136_59752277|GENSCAN_predicted_CDS_8|864_bp
atgtcctatagctatcttatctgctacgtcaacattcaaaagatgcacaaagttacaaag
aaaaaagccttatgttccgtaatgacaaaattacaatggaaatatcctgaagtgttagat
ttcacaagggtaaaagggtgggggagcggaggaggggcaaggttccatcccgagcacaac
taccagaaacggaaaagcgacggggtggggggccaaactgccaaatacaaacaggaccca
agccaagggcggggacctaagcagggcggggatccaggaagcacctcccgagcaggttct
atggctccccctaccaagggccggttcccagtccagctccggagccaccgtgccgagttc
tcccaggccgcactcaccccggaggaagccttggccccctcgtcctcttcgcccctccag
gccggcgacgtggggctgacggccaggtcgcaaaaagcagggccgagcggagcccgctcc
cctcggtcggcggtggagaccccggcccaatcccccggccgcagcggtacggcgtcggcg
gcagcagctgacccggacacagactatagtaccattcactggatcaactgtgttgatcct
acaaaggatttaagcagcggttgctacatggcatcaaagagagtggaggagaaaaggatg
ctgtcagttggtgccaaaaccaaactggaaatcctggtgcatatttgcataaatatgctg
tctgggcttggaagcccttcttaccgcagacctcttcatcaccctgaacatcgccttttg
aaatatttctggccagatctagggtgtattccacagctgcagccccatccattgcaaggt
tctgagcagattggcttgatatga

>gi568815583r:59542136_59752277|GENSCAN_predicted_peptide_9|205_aa
MSERHLPALVLAAKALACDPQLSSLTMRAELTRHFKSCYQLNGSLVKKSTSSFSLSILII
ADGLSIISSWTLPVKYTDKNRTTPGAPFLGNDANCFKLDSGLSRAGERSWASAVEGLSSL
QLSVEADDEASTGIAAVVTLYGDMCLGTNINIFSCFKGFSKGKSPVMMTSLRLEYRFLRE
IFKFCIFTTVAFNKHASGIGGIMKM

>gi568815583r:59542136_59752277|GENSCAN_predicted_CDS_9|618_bp
atgtcagaaagacacctgccagcacttgtcctggcagctaaggcattggcctgtgaccca
cagctgagctccctgaccatgcgagctgagctgacacggcatttcaagtcctgttaccag
ctcaacggttctcttgtaaaaaaaagcacctcttcatttagcctctccatcttgatcatt
gctgatgggctatcaataatttcaagttggaccttgcctgtgaaatacacagataaaaat
cgtaccacacctggtgccccctttttggggaatgatgcaaattgtttcaaattggacagt
ggactctccagggcaggggaaagatcttgggcaagtgctgtagaaggtctttcttccctg
cagctctctgttgaggctgacgatgaagcaagcactggaattgcagccgttgttacactg
tatggcgatatgtgtttgggtaccaacatcaacattttttcatgctttaaaggtttttct
aaagggaaatcgccagtcatgatgacctcactacgactagaatacaggtttttaagggaa
atttttaaattctgtatttttactactgtggctttcaataaacatgcttctggcataggt
ggcatcatgaaaatgtaa

>gi568815583r:59542136_59752277|GENSCAN_predicted_peptide_10|51_aa
MPKGKLLWLKQGEGLQLTPIMLKATDHLFLASPTEASICQFPTYRAAKMPA

>gi568815583r:59542136_59752277|GENSCAN_predicted_CDS_10|156_bp
atgcctaaaggaaagctgctctggctgaagcagggtgaagggctgcagctgacacctatc
atgttgaaggctactgatcatcttttcctagcctcaccaacagaagcatcaatatgccaa
tttccaacctaccgtgcagcaaagatgccggcctga

>gi568815583r:59542136_59752277|GENSCAN_predicted_peptide_11|139_aa
XSECQVDSPGNPTDDTAVEKPGQEAKRLTLQARGEAPSGCICGALLKSAGNWAPQLWLAQ
EASLRRPEVALKRCSIHSACHTLADTATLRDIPLKEGQAQPCGRALSHLSLPSPPPTNLD
SERNGSLHPWTVSTCICID

>gi568815583r:59542136_59752277|GENSCAN_predicted_CDS_11|420_bp
nngtctgagtgccaagtggactcccctgggaatccaacggatgacacagctgtagagaag
ccagggcaggaagcaaagaggctcacgctgcaggccagaggcgaagccccatcaggctgc
atctgtggagctttgttgaagtctgcagggaactgggcaccacagctgtggctggcacaa
gaggcaagtctgagaagacctgaagtggcgctcaagaggtgttcaatacacagtgcatgt
cacacgttggcagatacagcaactttaagagacatccctctgaaagaaggacaagctcaa
ccctgtggcagagctctgtcccacctcagcctccccagcccaccccccaccaacctcgac
tcagagcgcaatggctctttgcatccttggacagtttctacttgcatctgcatcgattaa