GENSCAN 1.0	Date run:  8-Nov-116	Time: 17:39:42

Sequence gi568815583f:41232958_41480183 : 247226 bp : 44.98% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +    471    532   62  2  2   51   70    65 0.217   1.72
 1.02 Intr +  10592  10648   57  2  0   67   47    94 0.597   1.20
 1.03 Intr +  10720  10782   63  1  0   73   96   104 0.794   7.53
 1.04 Intr +  23953  24033   81  1  0   47   84   135 0.659   7.75
 1.05 Intr +  29799  29926  128  0  2   36   65   129 0.945   5.72
 1.06 Intr +  37600  37661   62  2  2  116   91   100 0.978  11.55
 1.07 Intr +  45810  45932  123  2  0  107   81   132 0.998  15.18
 1.08 Term +  46379  46432   54  1  0  119   43    91 0.997   5.26
 1.09 PlyA +  48905  48910    6                               1.05

 2.00 Prom +  54503  54542   40                              -3.66
 2.01 Init +  58876  59048  173  0  2   62   63   133 0.852   7.12
 2.02 Intr +  99199  99573  375  1  0  131   66   194 0.022  15.63
 2.03 Intr + 108734 108785   52  2  1   41   74    26 0.023  -4.59
 2.04 Intr + 109429 109497   69  0  0   65  109    53 0.745   4.48
 2.05 Intr + 116141 116284  144  1  0   62   68   103 0.903   6.18
 2.06 Intr + 118076 118172   97  1  1   19   97    77 0.320   1.28
 2.07 Intr + 125192 125301  110  0  2   34   95    75 0.591   2.80
 2.08 Intr + 132445 132632  188  0  2   60  103    21 0.557  -0.71
 2.09 Intr + 138570 138727  158  0  2   86   58   106 0.909   7.05
 2.10 Intr + 142755 142871  117  1  0   61   95    25 0.467   0.94
 2.11 Term + 149188 149309  122  2  2   49   55    55 0.171  -3.06
 2.12 PlyA + 151072 151077    6                               1.05

 3.06 PlyA - 151517 151512    6                               1.05
 3.05 Term - 154636 154487  150  1  0   45   43    93 0.601  -1.59
 3.04 Intr - 155565 155491   75  0  0   72   87    23 0.386   0.31
 3.03 Intr - 162087 161902  186  0  0   50   87   137 0.833   9.69
 3.02 Intr - 164058 163530  529  2  1   47   73   236 0.686  10.94
 3.01 Init - 171045 170972   74  0  2   88  116    45 0.917   7.84
 3.00 Prom - 179819 179780   40                              -3.46

 4.00 Prom + 182474 182513   40                              -6.76
 4.01 Init + 184159 184356  198  0  0   54   94   392 0.996  33.30
 4.02 Intr + 205364 205474  111  1  0   76   90    92 0.913   8.78
 4.03 Intr + 219944 220091  148  1  1  101  105   100 0.836  12.81
 4.04 Intr + 224715 224919  205  1  1   80  116   208 0.984  21.06
 4.05 Intr + 231814 231928  115  1  1   40   91   116 0.914   7.55
 4.06 Intr + 233184 233295  112  2  1  108  115   173 0.999  21.95
 4.07 Intr + 237300 237435  136  1  1   98   57   261 0.981  23.63
 4.08 Intr + 238215 238392  178  0  1   89   11   106 0.752   2.92
 4.09 Intr + 241663 241745   83  0  2   94   70    30 0.567   0.24
 4.10 Intr + 242568 242655   88  0  1   34   88    65 0.694   1.07
 4.11 Intr + 242755 242862  108  0  0   75   94    58 0.915   5.58
 4.12 Intr + 243489 243566   78  2  0   85  116    66 0.992   8.85
 4.13 Intr + 244208 244329  122  1  2   25   89   188 0.995  11.89
 4.14 Intr + 244501 244558   58  1  1  117   83   117 0.994  12.99
 4.15 Intr + 245591 245668   78  1  0   76   82    58 0.918   3.75
 4.16 Term + 246146 246289  144  1  0   61   50    96 0.855   1.01
 4.17 PlyA + 246750 246755    6                              -0.45


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815583f:41232958_41480183|GENSCAN_predicted_peptide_1|209_aa
MWLVDKQLSAHGKAVFPIAKEDKSFDIPVLLNFEAFDSEGQITRLYSRFTSLDKGENGTL
SREDFQRIPELAINPLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPE
PLNSRSNKLHFAFRLYDLDKDEKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQD
GDSAISFTEFVKVLEKVDVEQKMSIRFLH

>gi568815583f:41232958_41480183|GENSCAN_predicted_CDS_1|630_bp
atgtggcttgtggacaaacaactaagtgctcatggaaaagctgttttccccattgccaaa
gaagataagagtttcgacatcccagtcctactgaattttgaagcatttgacagcgagggt
caaatcactcgcctctacagccggttcaccagcctggacaaaggagagaatgggactctc
agccgggaagatttccagaggattccagaacttgccatcaacccactgggggaccggatc
atcaatgccttctttccagagggagaggaccaggtaaacttccgtggattcatgcgaact
ttggctcatttccgccccattgaggataatgaaaagagcaaagatgtgaatggacccgaa
ccactcaacagccgaagcaacaaactgcactttgcttttcgactatatgatttggataaa
gatgaaaagatctcccgtgatgagctgttacaggtgctacgcatgatggtcggagtaaat
atctcagatgagcagctgggcagcatcgcagacaggaccattcaggaggctgatcaggat
ggggacagtgccatatctttcacagaatttgttaaggttttggagaaggtggatgtagaa
cagaaaatgagcatccgatttcttcactaa

>gi568815583f:41232958_41480183|GENSCAN_predicted_peptide_2|534_aa
MVLNKTVLTSDASCTSEVPPATCIFDQVATDLESPMTLLEPAFDFVGFLIVFSSFKVRWF
SATRWRKREHPLGLASAFPERFTALTGEDHGPEGPRQVPGEVHRVGEHCVTLCALEHSAP
LRLQPRRQLRAGGWLLSPQPCGAERRGPLHHLRIPLHGGRKRSLVNRPLSATTKVPPGRR
CTTPQHFWLIPIKCILHIVQATKLLKALKGYIKHEARKGNENQDESQTSASSCDETEIQI
SNQEEAERQPLGHVTKTRRRCKTVRVDPDSQNHEKQESQDLRATAKVPSPPDEHQEAENA
VSSDFKKLHEAHFKEMESIDQYIERKKKHFEEHNSMNELKQQPINKGGVRTPVPPRGRLS
VASTPISQRRSQGRSCGPASQSTLGLKGSLKRSAISAAKTGVRFSAATKDNEHKRSLTKT
PARKSAHVTVSGGTPKGEAVLGTHKLKTITGNSAAVITPFKLTTEATQTPVSNKKPVFDL
KASLSRPLNYEPHKGSEERLFPAAITSRSGERLCPAAHRLRCGERLCPAAPSGM

>gi568815583f:41232958_41480183|GENSCAN_predicted_CDS_2|1605_bp
atggtcctcaacaagactgtcctcacttcagatgccagctgtacttcggaggtaccccca
gccacctgcattttcgaccaagtggctacagatttggagagtcccatgaccctcttagaa
ccagcttttgatttcgttggttttcttattgtttttagttcctttaaagttaggtggttc
tccgccacccggtggagaaagcgggaacaccctctcgggctagcctctgcctttcccgaa
cgcttcactgcactcactggagaagaccacggccccgagggaccgcgacaggtcccaggc
gaggtgcaccgagtcggcgagcactgcgtgacactgtgcgcactggaacacagcgcacct
ctcaggctgcagccaagacggcagctgcgggccggcggctggctcctcagcccccagccc
tgcggggccgagcggcgaggaccccttcaccacctgcgtatcccactccatggaggtcgt
aaaagaagcttggtcaatcgccctctcagtgccaccacaaaagtccccccggggcggcgt
tgcacaacgccacagcatttctggctcatccccatcaaatgcatcttgcacattgtgcag
gcaaccaagttgttaaaagccttgaaaggctacattaaacatgaggcaagaaaaggaaat
gagaatcaggatgaaagtcaaacttctgcatcctcttgtgatgagactgagatacagatc
agcaaccaggaagaagctgagagacagccacttggccatgtcaccaaaacaaggagaagg
tgcaagactgtccgtgtggaccctgactcacagaatcatgaaaagcaggaaagccaggat
ctcagagctactgcaaaagttccttctccaccagacgagcaccaagaagctgagaatgct
gtttcctcagactttaagaagcttcatgaagctcattttaaggaaatggagtccattgat
caatatattgagagaaaaaagaaacattttgaagaacacaattccatgaatgaactgaag
cagcagcccatcaataagggaggggtcaggactccagtacctccaagaggaagactctct
gtggcttctactcccatcagccaacgacgctcgcaaggccggtcttgtggccctgcaagt
cagagtaccttgggtctgaaggggtcactcaagcgctctgctatctctgcagctaaaacg
ggtgtcaggttttcagctgctactaaagataatgagcataagcgttcactgaccaagact
ccagccagaaagtctgcacatgtgaccgtgtctgggggcaccccaaaaggcgaggctgtg
cttgggacacacaaattaaagaccatcacggggaattctgctgctgttattaccccattc
aagttgacaactgaggcaacgcagactccagtctccaataagaaaccagtgtttgatctt
aaagcaagtttgtctcgtcccctcaactatgaaccacacaaaggaagtgaggagcgcctc
ttcccagccgccatcacatctaggagtggggagcgtctctgcccggccgcccatcgtctg
agatgtggggagcgcctctgccccgccgccccatctgggatgtga

>gi568815583f:41232958_41480183|GENSCAN_predicted_peptide_3|337_aa
MGHGETARIKGCGKRIEESVMGAERKFSKPTSALYPFLGIRFAEYSSSLQKPVASPGKAS
SQRKTEGDLQGDHQKEVALDITSSEEKPDVSFDKAIRDEAIYHFRLLKDEIVDHWRGPEG
HPLHEVLLEQAKVVWQFRGKEDLDKWTVTSDKTIGGRSEVFLKMGKNNQSALLYGTLSSE
APQDGESTRSGYCAMISRIPRGAFERKMSYDWSQFNTLYLRVRGDGRPWMVNIKEDTDFF
QRTNQMYSYFMFTRGGPYWQEVKIPFSKFFFSNRGRIRDVQHELPLDKISSIGFTLADKV
DGPFFLEIDFIGVFTDPAHTEEFAYENSPELNPRLFK

>gi568815583f:41232958_41480183|GENSCAN_predicted_CDS_3|1014_bp
atgggccatggagagacagcccgcattaaaggttgtgggaagagaatagaagagtcagtg
atgggggcagaaagaaaattctctaagccaacttctgccttgtatccatttttgggtatt
cgctttgcagagtattccagtagtcttcagaaaccagtggcttctcctggcaaagcctcc
tcacagaggaagactgaaggggatttgcaaggagatcaccagaaagaagttgctttggat
ataacttcttctgaggagaagcctgatgttagtttcgataaagcaattagagatgaagca
atataccattttaggcttttgaaggatgaaattgtggatcattggagaggaccggaaggc
caccctctgcatgaggtcttgctggaacaagccaaggttgtctggcaattccgggggaaa
gaagatttggataagtggacagtgacttctgataagacgattggaggcagaagtgaagtg
tttttgaaaatgggcaagaataaccaaagtgcactgctatatggaactctgagctctgag
gcgcctcaggacggggagtctacccgaagtgggtactgtgcaatgatatccaggattcca
aggggtgcttttgagaggaagatgtcttacgattggtcccagttcaatactctgtatctc
cgtgtacgtggggatggtcggccttggatggtgaatatcaaggaggacacagatttcttc
cagaggacgaatcagatgtatagttacttcatgttcacccgcgggggaccctactggcag
gaggtcaagattcctttttccaaatttttcttctctaatcgaggaagaatccgggatgtt
cagcatgagcttccgcttgataagatctcttctataggattcaccttggctgataaagtg
gatggtccattcttcctggagatagattttattggcgtgtttactgatccagctcataca
gaagaatttgcctatgaaaattctccagagcttaacccaaggctttttaaataa

>gi568815583f:41232958_41480183|GENSCAN_predicted_peptide_4|653_aa
MRGRLCVGRAAAAAAAVAVPLAGGQEGSPGGGRRGSRGTTMVKKRKGRVVIDSDTEDSGS
DENLDQELLSLAKRKRSDSEEKEPPVSQPAASSDSETSDSDDEWTFGSNKNKKKGKARKI
EKKGTMKKQANKTASSGSSDKDSSAESSAPEEGEVSDSDSNSSSSSSDSDSSSEDEEFHD
GYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKREVLKRRFEIKKKLKTAKKKEKKEKK
KKQEEEQEKKKLTQIQESQVTSHNKERRSKRDEKLDKKSQAMEELKAEREKRKNRTAELL
AKKQPLKTSEVYSDDEEEEEDDKSSEKSDRSSRTSSSDEEEEKEEIPPKSQPVSLPEELN
RVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGT
RTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIK
EALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQLN
ELEERAEALDRQRTKNISAISYINQRNREWNIVESEKALVAESHNMKNQQMDPFTRRQCK
PTIVSNSRDPAVQAAILAQLNAKYGSGVLPDAPKEMSKASVVPPCCLLSEAAG

>gi568815583f:41232958_41480183|GENSCAN_predicted_CDS_4|1962_bp
atgcgcggtcgcctttgtgtgggtcgagcagcggcggcggcggcggcagtggcggtccca
ctggcaggcgggcaagaggggagtccgggcggcggccggcgtgggagccgggggaccacc
atggtaaagaagcggaaaggccgcgtcgtgatcgactcggacacagaggacagcggcagc
gacgagaacctggatcaggagctcttgtccctggcaaagcgaaagcgcagtgactctgag
gagaaggagccgcctgtgagtcagcctgcagcctcgtcagactcggagacgtctgacagt
gacgatgagtggacatttgggagcaataaaaataagaagaaaggaaaagccagaaaaata
gagaagaaaggaaccatgaagaaacaggccaacaaaactgcctcctcaggcagttcagac
aaagacagttcagctgagagctcagcccctgaggaaggtgaagtgtcagactctgacagc
aacagctcctcttccagttcagattcagactcttcctcagaagatgaagagttccatgat
ggctatggagaagacctcatgggagatgaggaagacagggcccgtctggaacagatgaca
gagaaagagagagagcaagaactgttcaatcgcatagagaagagggaggtgttgaaaaga
agatttgaaatcaagaaaaaactaaaaacagccaaaaagaaagaaaagaaagaaaagaag
aaaaagcaagaagaggagcaagaaaagaaaaaactgacacagattcaagaatctcaggta
acatcccacaacaaggaacggcgttccaagcgggatgagaaactagacaagaaatctcaa
gccatggaggagctaaaagcagagcgagaaaaacgaaagaacagaacagctgagctcctt
gccaaaaaacagccattaaaaaccagtgaggtctactctgatgatgaagaggaggaagag
gatgacaaatccagtgaaaagtcagaccgctcatcacgaacatcatcgtctgatgaagaa
gaggagaaagaagagatccctcccaaatcccaaccagtttccttacctgaagaattgaat
cgggttcgattatcacggcataagctagaacgctggtgtcacatgcccttctttgctaaa
actgtcacaggatgttttgtgcggattggcatcggaaaccacaacagcaaaccagtttac
cgggtcgctgagattacgggtgttgtggaaactgccaaagtttaccaactaggtggcacc
agaacaaacaaagggctgcaactacggcatggcaatgaccaacgcgtgttccgtttagag
tttgtctcaaaccaagaattcaccgaaagtgagtttatgaagtggaaagaagcgatgttc
tctgctggcatgcagttgcccactctagatgaaatcaataaaaaggaattatctattaaa
gaagctcttaattataaattcaatgatcaggacattgaagagattgtaaaagagaaagaa
aggttcagaaaagctccacccaactacgctatgaagaagactcagctactgaaggaaaag
gccatggctgaggacctgggggatcaggacaaggccaaacaaatccaagatcaactgaat
gagctggaggaacgggcagaggccctggaccgccagcggaccaagaacatatccgctatc
agttacatcaaccagcggaaccgggagtggaacattgtagagtctgagaaggcccttgtg
gctgaaagtcacaacatgaaaaaccaacagatggatccctttactcggcggcagtgcaag
cctaccatcgtttctaattccagagacccagctgttcaagctgccatcttggcccagctg
aatgcaaaatacggttctggagtgttaccagatgctccaaaggaaatgagcaaggcaagt
gtggtaccaccctgttgcctgctgagtgaggctgctggctga