GENSCAN 1.0	Date run:  8-Nov-116	Time: 09:48:19

Sequence gi568815583f:28689199_28889483 : 200285 bp : 43.02% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.23 PlyA -     49     44    6                               1.05
 1.22 Term -  12839  12655  185  0  2   31   40   116 0.431  -1.19
 1.21 Intr -  13171  13016  156  2  0   68   89   186 0.932  16.68
 1.20 Intr -  13364  13267   98  1  2  101   97    40 0.942   5.85
 1.19 Intr -  13547  13447  101  2  2   26   70    99 0.722   0.81
 1.18 Intr -  14212  14121   92  2  2   92   89    27 0.796   2.91
 1.17 Intr -  14719  14644   76  1  1   85  102   105 0.810  10.69
 1.16 Intr -  15047  14952   96  2  0   69   37   164 0.722   9.61
 1.15 Intr -  16029  15889  141  0  0   85   66   115 0.957   9.55
 1.14 Intr -  16541  16285  257  0  2   85   90   374 0.996  34.46
 1.13 Intr -  17005  16918   88  1  1   88   86    77 0.957   7.04
 1.12 Intr -  17308  17201  108  1  0   78   78    36 0.805   2.08
 1.11 Intr -  17501  17415   87  2  0   59   94    82 0.985   6.07
 1.10 Intr -  18659  18550  110  0  2   82  109   107 0.859  12.20
 1.09 Intr -  18839  18755   85  2  1   86   81    43 0.984   2.79
 1.08 Intr -  18975  18928   48  0  0  116  105    44 0.968   7.78
 1.07 Intr -  19100  19005   96  2  0  105   99   -24 0.578   0.61
 1.06 Intr -  19215  19177   39  0  0  123   21    55 0.621   0.72
 1.05 Intr -  20149  20069   81  1  0   87   91    64 0.967   6.43
 1.04 Intr -  20390  20331   60  2  0   68   94    42 0.755   1.73
 1.03 Intr -  21408  21289  120  0  0   92   76    34 0.903   3.29
 1.02 Intr -  29291  29236   56  0  2   77  110    43 0.254   4.10
 1.01 Init -  36029  36005   25  2  1   89   81    37 0.250   2.83
 1.00 Prom -  42224  42185   40                              -3.16

 2.00 Prom +  42940  42979   40                              -3.36
 2.01 Init +  48385  48717  333  0  0  100   10   450 0.926  35.70
 2.02 Term +  48796  48957  162  0  0  -45   45   310 0.415  11.34
 2.03 PlyA +  50498  50503    6                              -0.45

 3.00 Prom +  51334  51373   40                              -3.16
 3.01 Init +  51942  52068  127  2  1   77   66   122 0.695   9.22
 3.02 Term +  60897  60907   11  1  2  103   39     1 0.067  -4.94
 3.03 PlyA +  61080  61085    6                               1.05

 4.03 PlyA -  61301  61296    6                               1.05
 4.02 Term -  74941  74704  238  0  1   -6   41   267 0.130   8.24
 4.01 Init -  89265  89219   47  0  2   83   82    28 0.186   1.86
 4.00 Prom -  94704  94665   40                              -5.76

 5.00 Prom +  98238  98277   40                              -1.66
 5.01 Init + 100001 100275  275  1  2   48   15   806 0.131  63.74
 5.02 Intr + 100927 100969   43  1  1   97  105    30 0.197   3.84
 5.03 Intr + 102736 102804   69  0  0   80   53    72 0.149   2.28
 5.04 Intr + 108217 108277   61  0  1   62   42    39 0.020  -4.99
 5.05 Intr + 108612 108662   51  1  0   62  102    38 0.040   1.48
 5.06 Intr + 119050 119214  165  2  0   65   45   137 0.542   7.03
 5.07 Intr + 124645 124787  143  2  2   57   11   144 0.633   3.67
 5.08 Intr + 126149 126397  249  1  0   97   67   130 0.975   9.43
 5.09 Intr + 129706 129800   95  0  2   72  106    37 0.466   2.66
 5.10 Intr + 136749 136789   41  0  2   55  103    42 0.174   0.27
 5.11 Term + 139987 140048   62  2  2   77   49    60 0.304  -1.03
 5.12 PlyA + 140955 140960    6                               1.05

 6.11 PlyA - 141423 141418    6                               1.05
 6.10 Term - 154242 153037 1206  0  0   28   42  2211 0.769 202.17
 6.09 Intr - 154677 154536  142  2  1   61   99   244 0.992  23.16
 6.08 Intr - 155065 155007   59  1  2  127   16    46 0.982  -1.02
 6.07 Intr - 156437 156331  107  0  2   80  113    73 0.915   8.93
 6.06 Intr - 156613 156520   94  1  1   92   81    85 0.991   7.74
 6.05 Intr - 157051 157022   30  1  0  128   77    46 0.983   5.83
 6.04 Intr - 157994 157866  129  2  0  102   76    98 0.993  10.89
 6.03 Intr - 164801 164700  102  2  0   23   64   106 0.069   2.07
 6.02 Intr - 169256 169123  134  0  2   97    4   132 0.017   6.06
 6.01 Init - 176430 176376   55  0  1   83   98    -6 0.137  -0.65
 6.00 Prom - 185045 185006   40                              -2.96

 7.04 PlyA - 185299 185294    6                               1.05
 7.03 Term - 195466 195248  219  1  0   81   48   121 0.852   4.44
 7.02 Intr - 196749 196447  303  0  0   19   80   167 0.455   5.79
 7.01 Init - 198628 198497  132  1  0  102   69    49 0.487   3.65

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  23125  23078   48  1  0   70   93    54 0.975   5.05


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815583f:28689199_28889483|GENSCAN_predicted_peptide_1|734_aa
MEMDIIQPGLAVRCCVLERRIVPSLWQLKEYWQKNSPRVPAGANRNRKTNGSIPQTATSG
GCQPPGDSATGFHREGPTSSATLKDLESPCQERAVVLDSRSVEISQLKNTIKSLKQQKKQ
VEHQLEEGPDNLVPWVGLSWGIGGILGACLLLCHLCLPLEKKANNKKQKAKRVLEVQLQT
LNIQKEELNTDLYHMKRSLRYFEEKSKDLAVRLQHSLQRKGELESVLSDVMATQKKKANQ
LSSPSKAGTEWKLEQSMREEALLKVQLTQLKESFQQVQLERDEYSEHLKGERARWQQRMR
KMSQEICTLKKEKQQDMRRVEKLERSLSKLKNQMAEPLPPEPPAVPSEVELQHLRKELER
VAGELQAQVKNNQRISLLNQRQEERIREQEERLRKQEERIQEQHKSLQQLAKPQSVFEEP
NNENKSTLQLEQQVKELQEKLGEVKESETSTPSKKGWEAGSSLWGGEVELKSQEAQSLQQ
QPDHYLGHLQQSVATYQQQEHLEAASQQNQQLTAQLSLMALPGEGHGGEHLDSEGEEAPQ
PMPSVPEDPESREAMSSFMDHLEEKADLSELVKKQELRFIQYWQERCHQKIHHLLSEPGG
RAKDAALGGGHHQAGAQGGDEGEAAGAAADGIAAYSNYNNGHRKFLAAAHNSADEPGPGA
PAPQELGAADKHGGPPGAPRLGQQLLCAILLLGLAAKKKEINITILKELLKKFLNKKPSY
GVNLLHNSFTSFEC

>gi568815583f:28689199_28889483|GENSCAN_predicted_CDS_1|2205_bp
atggagatggacatcatccaacctggcctggctgtgcgctgctgtgttctggaaaggcgc
attgtgccctcgctgtggcagttaaaagaatattggcagaaaaacagccctagagttcca
gcaggagcgaacaggaacaggaaaacaaatggcagtatccctcagacagccacttctggt
ggttgccagccacctggggattcagcaacaggttttcacagggaaggccctacatcatct
gctaccctgaaagatctggagagcccgtgccaagaacgagcagtagtcctggattcaagg
tccgtagaaatcagtcaactgaagaacaccatcaaatctttgaaacaacagaagaaacaa
gtggaacatcagctggaagaaggccccgataacctggtcccatgggtgggcctgtcctgg
ggcattggtggcattctgggggcatgtctcttgctgtgccatctctgcctccccctggaa
aagaaagcaaacaacaagaaacagaaagccaaaagggtgctagaggttcaactccagaca
ttgaacatacagaaagaggaactaaatacggacctgtaccacatgaaacgttctctcaga
tactttgaagaaaagtccaaggatctggctgtccgcctgcaacattcattgcagcgtaaa
ggagagttagagagtgttctctctgatgtcatggccacacagaagaagaaggcaaaccag
ttgtccagccccagtaaagcaggtacggagtggaagttagagcagtccatgcgggaggag
gcactactgaaagtgcagctgacacagttgaaggagtcatttcaacaagtccaattagaa
agagatgagtattctgaacatctaaaaggagagagggcccggtggcagcagaggatgaga
aaaatgtcgcaggagatttgcacattaaagaaagagaagcagcaagatatgcgtcgggta
gagaagctggagaggagcttgtccaaactcaaaaaccagatggctgaacccttgcccccg
gagcccccagcagtgccctctgaggtggagctgcagcacctgaggaaggaactagagaga
gtggcaggagagctccaggcccaggtcaaaaacaatcagcgcataagtctcctgaaccag
cgacaagaagagaggattcgggagcaggaagagaggcttcggaagcaggaggagaggatt
caggagcagcacaagagccttcagcagctggccaagccacagagcgtcttcgaggagccg
aacaatgagaacaagagcacactgcagttggagcagcaagtaaaggagctacaggagaag
cttggcgaggtgaaggagtcggaaacctccaccccatccaagaagggctgggaggcgggc
agcagcctctggggaggggaggtggagctgaagagccaagaggctcagagtctgcagcag
cagccagaccattacctgggtcacctgcagcagtccgtggccacctatcagcagcaggag
cacctggaagctgccagccagcagaaccagcagctaacggcccagctgagcctcatggct
ctccctggggaaggacacggaggagaacatctggacagtgagggggaggaggcacctcag
cccatgccgagtgtcccagaggacccggagagcagggaggccatgagcagctttatggac
cacctggaggagaaggcagacctgagtgagcttgtgaagaaacaagaacttcgcttcatt
caatactggcaagagagatgccatcagaaaatccatcaccttttatcagaaccagggggc
cgtgccaaagatgcggcactgggaggaggacaccatcaggctggagctcagggaggagat
gaaggtgaagctgctggagctgcagcagatggtattgcggcttacagcaactacaacaat
gggcacagaaaattcctggccgctgcccacaactctgctgatgagcccggtccaggagcc
ccagctccccaggagcttggggctgcagacaagcatggtggaccaccaggagcacccagg
cttgggcagcaactgctgtgtgccattcttttgctgggcttggctgccaagaagaaggag
ataaacatcaccatcctcaaagagctgctcaagaaatttttaaataagaaaccaagttat
ggggttaatctcctacacaattcatttacttcctttgaatgttag

>gi568815583f:28689199_28889483|GENSCAN_predicted_peptide_2|164_aa
MEDEQPDSLEGWAPLREGLFADPQRHRLRFLVAWNGAEGKFAVTCHDRTAQQPQRREGAR
LGLEHKPEAAVSPPSWAGRLSAAGFRGARRQPAALWPPLEHCFPRLPPELDAALQELCGQ
LERYLGAAAHGCGGATVRDALFAAKGRAADCESPREFRERALRA

>gi568815583f:28689199_28889483|GENSCAN_predicted_CDS_2|495_bp
atggaggacgagcagcccgacagcctggagggctgggcgccgctccgggagggcctcttc
gccgatccccagaggcaccggttgcgcttcctggtggcttggaacggcgcggagggcaag
tttgctgtgacttgtcacgaccgcaccgcgcagcagccgcagcggcgcgagggggcccgg
ctggggctggagcacaagcccgaggccgccgtgtccccgcccagctgggccggccggctc
tcggccgcggggttccgcggcgcgcgccggcagccagcggcgctgtggccgcctctggaa
cactgcttcccacggctgccgccggagctggacgcggcgctgcaggagctttgcgggcag
ctggagcgctacctgggcgcggcggcccacggctgtggcggcgccaccgtgcgcgacgct
ctcttcgcggctaagggccgcgcggccgactgcgagagcccgcgcgagtttcgggagcgg
gccctgcgcgcctga

>gi568815583f:28689199_28889483|GENSCAN_predicted_peptide_3|45_aa
MVALMKVYQEEDEAYQELVTVATTFFQYLLRPFRAMREVATLYEI

>gi568815583f:28689199_28889483|GENSCAN_predicted_CDS_3|138_bp
atggtagcattaatgaaagtttaccaagaggaagatgaagcctaccaggaattagttacc
gtggcaaccacgttcttccagtacttattgcggccatttagggctatgcgagaagttgca
actttatatgaaatttag

>gi568815583f:28689199_28889483|GENSCAN_predicted_peptide_4|94_aa
MVKYALVQLYTINEYSFFVFGGALKSSSGYLAKSSIVEDGVMVQITAENMDSSRQALLET
RDFSITCGKADAEDPQERMHIRWVDDDKNVSKGV

>gi568815583f:28689199_28889483|GENSCAN_predicted_CDS_4|285_bp
atggtcaaatatgcacttgtacaactttatactatcaatgagtatagtttttttgtgttc
ggtggcgctctgaaatcctcttctggataccttgccaagtccagtattgtggaagatggc
gttatggtccagatcactgcagagaacatggattcctcgaggcaggcactgctagagacg
agggacttcagcatcacctgtgggaaggcagacgcggaggatccccaggagcgcatgcac
atccggtgggtggatgatgacaagaacgttagcaagggtgtctaa

>gi568815583f:28689199_28889483|GENSCAN_predicted_peptide_5|417_aa
MLGARVAAHLDALGPLVPYVPPPLLPSMFYVGLFFVNVLILYYAFLMEYIVLNVGLVFLF
EDMDQALVDLGVLSDPGSGLYDADSELDVFDGLLVPQQVGKTDIMLAIEKLQAGALATDA
VTAALVELEGDRRNFYGLPVLEMPSGHGDVELTTLERQLDAFSSHLQGTSFRTVLDKAVQ
ADGHVKECYPSHRDPIVLLCKPEPELNAAIPSANPAKTMQGRCLEDIDVNEAKKEIRLHL
AETSSLWSSQRDVTLDVPIKELTKTVEERVVNVLKSLLSNLDEVKKEREGLENDLKSVNF
DMTSKFLTALAQDGMINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQFYNELTEI
LVRFQNKCSDIVLAWKTERDELLKSRMDYIICRNAFASNKNLLGSSFGEPDMENGLN

>gi568815583f:28689199_28889483|GENSCAN_predicted_CDS_5|1254_bp
atgctcggcgcccgggtcgcggcccacctggacgcactgggccccctggtcccctacgtg
ccgccgccgctgctgccctctatgttctacgtgggcctgttcttcgtcaatgtgctgatc
ctgtactacgccttcctcatggagtacatcgtcctcaacgtgggcctcgtcttcctgttc
gaggacatggaccaggcgctcgtggacctcggcgtgctctccgaccccggctcgggcctt
tacgatgctgactcggagctcgacgtctttgatgggttactcgttcctcagcaagttggc
aaaacagatatcatgctggcaattgaaaagctgcaggcgggtgctcttgcaactgacgca
gtcactgcagcactggtggaacttgagggggatagaagaaacttctacggcctgccagtc
cttgaaatgcctagtggtcatggagatgtagagctgaccacactggaacgacagcttgat
gcatttagctcacatttacagggaaccagcttcagaacagttttagataaagctgtgcaa
gcagatggacacgtgaaagaatgttacccgtctcatcgtgaccccatcgtgcttttgtgt
aagccagagcctgagctgaatgctgccatcccttctgctaatccagcaaagaccatgcag
ggcagatgtttagaagatatagatgtaaatgaggccaaaaaggaaattcgcctacattta
gcagaaacctcgagtctctggtcttcacaaagggatgttactttggacgttcctatcaag
gagttaactaagactgtggaagaaagagttgtaaatgtcttaaaatccttattgtcaaat
cttgatgaagtaaagaaggaaagagagggtctggagaatgacttgaaatctgtgaatttt
gacatgacaagcaagtttttgacagccctggctcaagatggcatgataaatgaagaagct
ctttctgttactgaactagatcgagtctatggaggtcttacaactaaagtccaagaatct
ctaaagaaacaggagggacttcttaaaaatattcagttttacaatgagttgactgaaatc
ctggtcaggttccagaacaaatgcagcgatatagttttggcatggaagacagaaagagat
gaactcttaaagagtaggatggattatattatttgtcgaaatgcctttgcatctaacaag
aacctcttgggttcatcctttggagaacctgatatggaaaatggactgaactag

>gi568815583f:28689199_28889483|GENSCAN_predicted_peptide_6|685_aa
MGLGTVAHACNPSTLRGQGPANTVVLEIRLAPYCQPTTSSQIRQNDSTEEEAAVSCLVHV
HRRSFVELQFDDTPGKNTSHRNYCDPCFPKRVLGTQYFTDYHQWNSAGVGTGATDTKKKK
INHGANPETTTSGGCHSPEDKQQNRAQLKEAQDHTIRILMCQKTELETALHDSQDAARKF
EEDSKDLAARLHHSWHFAGELQRALSAMSAEHERADKYIKELTKEREAMSLELFRNIITN
KELKEKNAELQEKLRLVETEKSEIQLHIKELKRKLETDKIPLPQVQTNTLQEKMWRQEEE
LRDQEELRDQEKLRKHEEKMWRQEQRLRDQEKELREQEQQMQEQEEQMRKQEEQMRKQEE
QMRKQEEQMRKQEEQMRKQEEQMRKQEEQMGKQEEQMGEQEEQMRKQEKQMLKQKEQMRK
QEEQMWKQEEQIGEQEEQMRKQEEQMWKQEEQIGEQEEQMRKQEEQMWKQEEQMGEQMRK
QEEQMGEQEEQIRKQEEQMGEQEEQMRKQEEQMGEQEEQMRKQEEQMGEQEEQMRKQEEQ
MGEQEEQMGEQEEQMRKQVERLQFKEERLWDEYEKMQEEEEKIRRQVEKRREKKERMGEQ
EKTQEERCSEPCLPPSKYPSDMSHPGSLEPAREAGKGYSHDNRTAQIMQLPPGMKNAQER
PGLGSTSCIPFFYGGDKKKIKIISI

>gi568815583f:28689199_28889483|GENSCAN_predicted_CDS_6|2058_bp
atggggctgggcacagtggctcacgcctgtaatcccagcactttgagaggccaaggacca
gccaacaccgttgtgttagaaataaggttagctccttattgccaaccaaccacaagctcc
cagattcgtcagaatgattccaccgaggaggaagctgcagtcagctgcctggtccatgtg
catcggcggagctttgtggagctacaatttgacgacacccccggaaaaaacacaagccac
agaaactactgtgacccgtgctttccaaagagggttttgggaactcagtattttacagac
tatcatcagtggaacagtgctggtgttggtaccggagcaaccgacaccaaaaagaagaaa
ataaatcatggcgctaaccctgagacaaccacttcggggggctgccactcgcctgaggat
aaacaacagaaccgagctcagctgaaagaggcccaggatcataccatacgaatccttatg
tgtcagaaaactgaactggagacagcgctccatgacagccaggatgctgccaggaaattt
gaagaagattccaaggatctggcagcccgcctgcatcattcctggcactttgcaggagag
ttacagcgggctctctctgctatgtccgcagagcacgagagggcggacaagtacatcaag
gagttaacaaaggagagggaagccatgagtctggagctgttcaggaacatcataaccaat
aaggagctgaaggagaaaaatgccgaactacaagaaaaacttcgactggtagaaactgaa
aagtctgagatccagctccacatcaaggagctaaaaaggaaactggagacggacaaaatc
ccgctgccacaggttcaaaccaacactttgcaggagaagatgtggaggcaggaggaggag
ctacgggatcaggaggagctacgggatcaggagaagctacggaagcacgaggagaagatg
tggagacaggagcagaggctgcgggaccaggagaaggagctgcgggagcaggagcagcag
atgcaggagcaggaggagcagatgcggaagcaggaggagcagatgcggaagcaggaggag
cagatgcggaagcaggaggagcagatgcggaagcaggaggagcagatgcggaagcaggag
gagcagatgcggaagcaggaggagcagatggggaagcaggaggagcagatgggggagcag
gaggagcagatgcggaagcaggagaagcagatgctgaagcagaaggagcagatgcggaag
caggaggagcagatgtggaagcaggaggagcagataggggagcaggaggagcagatgcgg
aagcaggaggagcagatgtggaagcaggaggagcagataggggagcaggaggagcagatg
cgaaagcaggaggagcagatgtggaagcaggaggagcagatgggggagcagatgaggaag
caggaggagcagatgggggagcaggaggagcagatccggaagcaggaggagcagatgggg
gagcaggaggagcagatgcggaagcaggaggagcagatgggggagcaggaggagcagatg
cggaagcaggaggagcagatgggggagcaggaggagcagatgaggaagcaggaggagcag
atgggggagcaggaggagcagatgggggagcaggaggagcagatgcggaagcaggtggag
aggctgcaattcaaggaggagaggctgtgggatgagtatgagaagatgcaggaggaggag
gagaagatccggaggcaggtggagaagaggcgggagaagaaggagaggatgggagagcag
gagaagacgcaggaggagcggtgctcagagccctgcctccctccctccaaatatccttct
gatatgagccaccctggcagcctggagcctgcacgagaggccgggaagggttattcccat
gacaaccgcactgcacagatcatgcagctgccccctggaatgaagaacgcccaggagcgc
ccaggcttaggcagcacctcctgcatcccattcttctacggaggagacaagaaaaagatc
aagatcatcagtatctaa

>gi568815583f:28689199_28889483|GENSCAN_predicted_peptide_7|217_aa
MEPTPRAPLTVLLEPTEGRLPAHSHKLQLYPLTPWTLPGAPAFQIARREEREDKDASVPG
VREVLRPLAPALGQSAGQEGALGTPGPPGPVSGIGAGTQALEGAAPRTPRALGSTQIPGR
APAVLAGELQGSGPAGRASEREAPQMSTPSLSTFHLHRHSAYLANTKFIQPPVAQPFTNA
NSGKQQLRRSDSEKINAVIFLPYCYVVTSHRKPDTCA

>gi568815583f:28689199_28889483|GENSCAN_predicted_CDS_7|654_bp
atggagcccactccaagggcccccctgacagtgctgctagagcccaccgagggaaggctg
ccggcacacagccacaagctccagctttacccactcacgccctggacattgcctggagcc
ccagcgttccagatcgcgcgccgtgaagagagggaagacaaagatgcgtccgtgccgggc
gtgcgcgaggtcctgcgccccctggccccggcgctgggacagtctgcagggcaggagggt
gcactcgggaccccgggtccccccgggccggtctccgggatcggggctgggacccaggcg
ctggaaggcgcggcgccccgaacgccccgggccctggggagcacacagattcccgggcgt
gccccggccgtgctggctggggagctgcaggggtctggtcccgcaggtagagccagtgaa
cgcgaggctccgcagatgagcacaccttcactgtctactttccacctgcatagacattct
gcttacctggctaacacaaagttcatccagcctcctgtggcccagcctttcaccaatgcc
aatagtgggaagcaacaattaagaagaagtgattctgagaagataaatgcagtcatcttc
ttgccttactgttatgtggtcacatcccataggaaaccagacacctgtgcctga