GENSCAN 1.0	Date run:  3-Nov-116	Time: 07:54:58

Sequence gi568815582f:57104659_57338972 : 234314 bp : 46.65% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   1389   1516  128  0  2   65   96    51 0.723   3.92
 1.02 Intr +   6050   6264  215  0  2  134   78   182 0.490  20.23
 1.03 Intr +   8630   8809  180  1  0   81  101   311 0.992  31.76
 1.04 Intr +  10818  10892   75  2  0  130   33    76 0.984   6.01
 1.05 Intr +  12838  12909   72  0  0   69  116    88 0.996   9.30
 1.06 Intr +  14537  14620   84  1  0  118   90    76 0.999  10.82
 1.07 Intr +  14903  14992   90  1  0  153   94   110 0.999  18.29
 1.08 Intr +  16435  16533   99  0  0   86   97   216 0.998  22.61
 1.09 Intr +  17016  17498  483  2  0   60   47   246 0.442  10.92
 1.10 Intr +  18756  18815   60  2  0   85   75    42 0.597   1.53
 1.11 Intr +  21202  21335  134  0  2  106  110   159 0.999  19.34
 1.12 Intr +  23374  23539  166  1  1  122   97   -20 0.399   2.26
 1.13 Intr +  30117  30168   52  2  1  108  109    88 0.999  11.38
 1.14 Intr +  32491  32624  134  2  2   30  113   215 0.969  18.56
 1.15 Intr +  41427  41663  237  2  0   81   92   468 0.123  44.31
 1.16 Term +  42893  43000  108  1  0  112   49   117 0.998   8.71
 1.17 PlyA +  43287  43292    6                               1.05

 2.08 PlyA -  43986  43981    6                               1.05
 2.07 Term -  49777  49632  146  2  2   75   29   241 0.679  14.97
 2.06 Intr -  59407  59343   65  0  2   79   98    42 0.935   2.66
 2.05 Intr -  62556  62435  122  0  2  -10   88   138 0.603   3.29
 2.04 Intr -  67714  67566  149  2  2   82   67   147 0.991  11.95
 2.03 Intr -  68216  68118   99  0  0  147   63   141 0.999  17.58
 2.02 Intr -  69211  69070  142  1  1  104   69   147 0.812  14.33
 2.01 Init -  69806  69783   24  2  0   45   90     2 0.220  -4.32
 2.00 Prom -  70675  70636   40                              -3.66

 3.00 Prom +  76508  76547   40                              -6.66
 3.01 Init +  80965  81126  162  0  0   56   43   137 0.717   3.79
 3.02 Term +  81356  81511  156  1  0   84   55   126 0.961   6.83
 3.03 PlyA +  82975  82980    6                               1.05

 4.00 Prom +  91415  91454   40                              -5.36
 4.01 Init + 100118 100350  233  1  2   81   97   127 0.580  10.63
 4.02 Intr + 103400 103452   53  2  2   98   68    -9 0.481  -3.35
 4.03 Intr + 104417 104529  113  0  2   79  106    -4 0.610   0.60
 4.04 Intr + 108314 108440  127  1  1   95   93    11 0.590   2.55
 4.05 Intr + 112246 112377  132  2  0   97   84    45 0.964   5.62
 4.06 Intr + 116074 116189  116  2  2   74   92   122 0.837  11.37
 4.07 Intr + 116614 116757  144  0  0   76   84   168 0.999  15.68
 4.08 Intr + 122684 122762   79  1  1  123   74   197 0.940  20.92
 4.09 Intr + 126053 126155  103  0  1  106   75     5 0.733   0.23
 4.10 Intr + 126509 126661  153  2  0   78  116    40 0.707   4.99
 4.11 Intr + 130466 130570  105  2  0   65  110    23 0.222   1.53
 4.12 Intr + 141422 141483   62  2  2   31   94    77 0.036   0.98
 4.13 Intr + 143879 143985  107  0  2   36  102   144 0.986  10.53
 4.14 Intr + 145109 145194   86  1  2   80   79   111 0.998   8.02
 4.15 Intr + 145753 145849   97  1  1   78   92   113 0.739  10.71
 4.16 Term + 147508 147609  102  0  0   74   42    26 0.324  -5.12
 4.17 PlyA + 149628 149633    6                               1.05

 5.09 PlyA - 149962 149957    6                               1.05
 5.08 Term - 152371 152255  117  1  0  103   40   173 0.992  12.54
 5.07 Intr - 153926 153804  123  2  0   96  109   164 0.999  20.08
 5.06 Intr - 157412 157239  174  2  0   90   89   217 0.986  22.14
 5.05 Intr - 159867 159715  153  0  0   66   73    45 0.300   1.07
 5.04 Intr - 164477 164349  129  2  0   57   94    30 0.097   1.39
 5.03 Intr - 174915 174891   25  2  1   65   88    20 0.011  -2.27
 5.02 Intr - 179597 179518   80  2  2   86   49    85 0.235   2.75
 5.01 Init - 179882 179748  135  2  0  122   85   274 0.996  30.64
 5.00 Prom - 180542 180503   40                              -3.96

 6.00 Prom + 210270 210309   40                              -3.16
 6.01 Sngl + 216639 216905  267  2  0   30   47   199 0.581   5.23
 6.02 PlyA + 217604 217609    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  41355  41663  309  2  0   40   92   571 0.856  48.01
S.002 Init + 141411 141483   73  2  1   51   94    83 0.904   6.43


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815582f:57104659_57338972|GENSCAN_predicted_peptide_1|772_aa
XPQGPVRLAAAGLAQRDPLFPPPAPTPDIMCSPFRGSRSFQPEDCQELLPPPPAPMAHIP
SGGAPAAGAAPMGPQYCVCKVELSVSGQNLLDRDVTSKSDPFCVLFTENNGRWIEYDRTE
TAINNLNPAFSKKFVLDYHFEEVQKLKFALFDQDKSSMRLDEHDFLGQFSCSLGTIVSSK
KITRPLLLLNDKPAGKGLITIAAQELSDNRVITLSLAGRRLDKKDLFGKSDPFLEFYKPG
DDGKWMLVHRTEVIKYTLDPVWKPFTVPLVSLCDGDMEKPIQVMCYDYDNDGGHDFIGEF
QTSVSQMCEARDSVPLEFECINPKKQRKKKNYKNSGIIILRSCKVNQRGQARARGQVSGH
TEGTDRALDLEPARPVFKSRLCHILALWPSELHLTRPQSPHLWNGDINEAEHVQGYSSLT
FLCGGQGRHELTFQGLSWWENCHCELLPPTVGMQGAEDIGWGHPVLSGISVTVTPMINRD
YSFLDYILGGCQLMFTVGIDFTASNGNPLDPSSLHYINPMGTNEYLSAIWAVGQIIQDYD
RPRSFLKPDPWAGTEAVTGQHVMFSVYETHVEWGRQIGLPDVANQNTRHPVKFEFQVSHE
FAINFNPTNPFCSGVDGIAQAYSACLPHIRFYGPTNFSPIVNHVARFAAQATQQRTATQY
FILLIITDGVISDMEETRHAVVQASKLPMSIIIVGVGNADFAAMEFLDGDSRMLRSHTGE
EAARDIVQFVPFREFRNAAKETLAKAVLAELPQQVVQYFKHKNLPPTNSEPA

>gi568815582f:57104659_57338972|GENSCAN_predicted_CDS_1|2319_bp
nngcctcagggtccagtacgcctggctgctgctgggctggcgcagagggacccactcttc
cccccgcctgccccaactccagacatcatgtgctccccgtttcggggatccagaagcttc
cagccagaggactgccaggaactcctgccaccgccaccggctcccatggcccacataccc
agtgggggtgccccagcagcgggggcagcccccatgggcccccagtattgcgtgtgcaag
gtggagctgtcagtgagtggccagaacctactggaccgggatgttacctccaagtccgac
cccttctgtgtcctctttacagagaacaatggcagatggatcgagtacgacaggacagaa
accgcgatcaacaacctcaaccccgccttctccaagaagttcgtgcttgactaccacttc
gaggaggtacagaagctcaagttcgcgctctttgaccaggacaagtccagtatgcggctg
gacgagcatgacttcctgggccagttctcctgcagcctgggcacgatcgtctccagcaag
aagatcactaggcctctgctgctgctgaatgacaagcctgcggggaagggcttgattacg
atcgctgcccaggagctgtccgacaaccgcgtcatcacactaagcctggcgggcaggagg
ctggacaagaaggacctctttgggaagtcagacccctttctggagttttataagccagga
gacgatggcaagtggatgctggtccacaggactgaggtgatcaagtacacactggaccct
gtgtggaagccattcacagtgcccttggtgtccctgtgtgatggggacatggagaagccc
atccaggtcatgtgctacgactatgacaatgacgggggccatgacttcatcggcgagttc
cagacctcagtgtcacagatgtgtgaggctcgagacagcgtcccgctggagttcgagtgc
atcaaccccaagaagcagaggaagaagaagaactataaaaactcgggcatcatcatcctg
cgatcctgcaaggtgaaccagcgtgggcaagcacgagccaggggccaggtttcaggccac
acagaagggacagacagagcactggatctggagccagcgaggcctgtgttcaaatcccgg
ctctgccacatcctggccctatggccttctgagcttcacctcaccaggcctcagtctcct
catctgtggaatggagatattaacgaggcagagcatgtccagggttactcttctctcaca
ttcctgtgtggaggccagggaaggcacgagctgaccttccagggcctgtcctggtgggag
aattgtcattgcgagttgctgccgcccacggtgggcatgcaaggggcagaggacattggg
tggggacaccctgtcctctctggcatcagcgtcactgtgactcccatgataaaccgagac
tactccttccttgactacatcctgggaggctgccagctcatgttcaccgttggaatagac
tttacagcctccaacgggaatcccctcgacccttcctctttgcactatatcaaccctatg
ggcaccaacgaatatctgtcggccatctgggctgttgggcagatcattcaggactacgac
aggccacgctcatttctcaagcctgatccttgggcaggcactgaggctgtaacggggcag
cacgttatgttctctgtttatgagacccatgtggagtgggggagacagataggattgcca
gatgtcgcaaatcaaaatacaagacacccagttaagtttgaatttcaggtctcccatgag
tttgccatcaacttcaaccccaccaaccccttctgctcaggtgtggatggtattgcccag
gcgtactcagcttgcctgccccacatccgcttctacggtcctaccaatttctcccccatc
gtcaaccacgtggcccggtttgcggcccaggccacacaacagcggacggccacgcagtac
ttcatcctcctcatcatcacggacggggtcatcagtgacatggaggagacacggcatgcc
gtggtgcaggcttccaagctgcccatgtccatcatcatcgtgggcgtgggcaatgcggac
ttcgctgccatggagttcctggatggggacagccgcatgctgcgctcccacacgggggag
gaggcagcccgcgatattgtgcagttcgttccctttcgagagttccgcaacgcagcaaaa
gagaccttggccaaagctgtgctggcggagctgccccaacaagttgtgcagtatttcaag
cataaaaacctgccccccaccaactcggagcccgcctga

>gi568815582f:57104659_57338972|GENSCAN_predicted_peptide_2|248_aa
MRFTMEHQIGCFIMDGGDDGNLIIKKRFVSEAELDERRKRRQEEWEKVRKPEDPEECPEE
VYDPRSLYERLQEQKDRKQQEYEEQFKFKNMVRGLDEDETNFLDEVSRQQELIEKQRREE
ELKELKEYRISFVLGGKPKVGISQENKKEVEKKLTVKPIETKNKFSQAKLLAGAVKHKSS
ESGNSVKRLKPDPEPDDKNQVCIGILPGLGAYSGSSDSESSSDSEGTINATGKIVSSIFR
TNTFLEAP

>gi568815582f:57104659_57338972|GENSCAN_predicted_CDS_2|747_bp
atgagatttactatggaacaccagattggttgtttcattatggatggaggggatgatggt
aaccttattatcaaaaagaggtttgtgtctgaggcagaactagatgaacggcgcaaaagg
aggcaagaagaatgggagaaagttcgaaaacctgaagatccagaagaatgtccagaggag
gtttatgaccctcgatctctatatgaaaggctacaggaacagaaggacaggaagcagcag
gagtacgaggaacagttcaaattcaaaaacatggtaagaggcttagatgaagatgagacc
aacttccttgatgaggtttctcgacagcaggaactaatagaaaagcaacgaagagaagaa
gaactgaaagaactgaaggaatacagaatatcctttgtacttggaggaaaacctaaggtt
ggaatttctcaagagaacaagaaggaagtggaaaagaaactgactgtgaagcctatagaa
accaagaacaagttctcccaggcgaagctgttggcaggagctgtgaagcataagagctca
gagagtggcaacagtgtgaaaagactgaaaccggaccctgagccagatgacaagaatcaa
gtatgtatcggcatcctcccaggcctgggtgcctactctgggagcagcgactccgagtcc
agctcagacagcgaaggcaccatcaatgccaccggaaagattgtctcctccatcttccga
accaacaccttcctcgaggccccctag

>gi568815582f:57104659_57338972|GENSCAN_predicted_peptide_3|105_aa
MPSRGHPQLPSGWARKPQASATPDKERVRGLRTGLALTLTAAAAHLFRKEAGTQGFLFLT
ATIESRPTSGDVTQSAELFLPGSPMEIRYPENEPERLDWAIHASG

>gi568815582f:57104659_57338972|GENSCAN_predicted_CDS_3|318_bp
atgccttcccgcgggcaccctcagctcccctcaggctgggcccgcaagccccaggcttcg
gctactccggacaaggagcgggtgcgcggactgagaacaggcctggccctaaccctaaca
gcagccgcagctcatctcttccgtaaggaagctggaacccagggcttcctgttcctcacc
gccacaatagagtcccgccccacttccggcgacgtaacccaatccgcggagctcttcctc
cccgggagcccgatggaaatccggtaccctgaaaacgagccggagagacttgattgggcc
attcacgcctcaggatga

>gi568815582f:57104659_57338972|GENSCAN_predicted_peptide_4|603_aa
MGNSCICRDDSGTDDSVDTQQQQAENSAVPTADTRSQPRDPVRPPRRGRGPHEPRRKKQN
VDGLVLDTLAVIRTLVDNDQEPPYSMITLHEMAETDEGWLDVVQSLIRVIPLEDPLGPAV
ITLLLDECPLPTKDALQKLTEILNLNGEVACQDSSHPAKHRNTSAVLGCLAEKLAGENKL
TISESSISDRLVTLESWANDPDYLKRQVGFCAQWSLDNLFLKEGRQLTYEKVNLSSIRAM
LNSNDVSEYLKISPHGLEARCDASSFESVRCTFCVDAGVWYYEVTVVTSGVMQIGWATRD
SKFLNHEGYGIGDDEYSCAYDGCRQLIWYNARRDTVGFLLDLNEKQMIFFLNGNQLPPEK
QVFSSTVSGFFAAASFMSYQQCEFNFGAKPFKYPPSMKFSTFNDYAFLTAEEKIILPRHR
RLALLKQVSIRENCCSLCCDEVADTQLKPCGHSSSASDAEFDAVVGYLEDIIMDDEFQLL
QRNFMDKYYLEFEDTEENKLIYTPIFNEYISLVEKYIEEQLLQRIPEFNMAAFTTTLQHH
KDEVAGDIFDMLLTFTDFLAFKEMFLDYRAEKEGRGLDLSSGLVVTSLCKSSSLPASQNN
LRH

>gi568815582f:57104659_57338972|GENSCAN_predicted_CDS_4|1812_bp
atgggtaattcctgtatctgccgagatgacagtggaacagatgacagtgttgacacccaa
cagcaacaggccgagaacagtgcagtacccactgctgacacaaggagccaaccacgggac
cctgttcggccaccaaggaggggccgaggacctcatgagccaaggagaaagaaacaaaat
gtggatgggctagtgttggacacactggcagtaatacggactcttgtagataatgatcag
gaacctccctattcaatgataacattacacgaaatggcagaaacagatgaaggatggttg
gatgttgtccagtctttaattagagttattccactggaagatccactgggaccagctgtt
ataacattgttactagatgaatgtccattgcccactaaagatgcactccagaaattgact
gaaattctcaatttaaatggagaagtagcttgccaggactcaagccatcctgccaaacac
aggaacacatctgcagtcctaggctgcttggccgagaaactagcaggtgaaaataaattg
actatttctgaatccagtattagtgaccggcttgtcacattggagtcctgggctaatgat
cctgattatctgaaacgtcaagttggtttctgtgcccagtggagcttagacaatctcttt
ttaaaagaaggtagacagctgacctatgagaaagtgaacttgagtagcattagggccatg
ctgaatagcaatgatgtcagcgagtacctgaagatctcacctcatggcttagaggctcgc
tgtgatgcctcctcttttgaaagtgtgcgttgcaccttttgtgtggatgccggggtatgg
tactatgaagtaacagtggtcacttctggcgtcatgcagattggctgggccactcgagac
agcaaattcctcaatcatgaaggctacggcattggggatgatgaatactcctgtgcgtat
gatggctgccggcagctgatttggtacaatgccagaagagatacagtaggatttctgtta
gacttgaatgaaaagcaaatgatcttctttttaaatggcaaccagctgcctcctgaaaag
caagtcttttcatctactgtatctggattttttgctgcagctagtttcatgtcatatcaa
caatgtgagttcaattttggagcaaaaccattcaaatacccaccatctatgaaatttagc
acttttaatgactacgccttcctaacagctgaagaaaaaatcattttgccaaggcacagg
cgtcttgctctgttgaagcaagtcagtatccgagaaaactgctgttccctttgttgtgat
gaggtagcagacacacaattgaagccatgtggacacagctcctccgcctctgatgcagaa
tttgatgctgtggttggatatttagaggacattatcatggatgacgagttccagttatta
cagagaaatttcatggacaagtactacctggagtttgaagacacagaagagaataaactc
atctacacacctatttttaatgaatacatttctttggtagaaaaatacattgaagaacag
ctgctgcagcggattcctgagttcaacatggcagccttcaccacaacattacagcaccat
aaggatgaagtggctggtgacatattcgacatgctgctcaccttcacagattttctggct
tttaaagaaatgtttttggactacagagcagaaaaagaaggccgaggactggacttaagc
agtggcttagtggtgacttcattgtgcaaatcatcttctctgccagcttcccagaacaat
ctgcggcactag

>gi568815582f:57104659_57338972|GENSCAN_predicted_peptide_5|311_aa
MAEFPSKVSTRTSSPAQGAEASVSALRPDLGFVRSRLGALMLLQLGASRTDAPKIALHPS
HHDTTPWPSLRAPPEYLGRQGVKGSAQGPSAYEELRECSSKGDLRAGLDFWGLLWEHHRL
ICQGRVLVSVMVEEIGLLVPKHIVYLAYIMCRALLGTEDTAVNKTQNLPRRAGKVLGLLV
WALIADTPYHLYPAYGWVMFVAVFLWLVTIVLFNLYLFQLHMKLYMVPWPLVLMIFNISA
TVLYITAFIACSAAVDLTSLRGTRPYNQRAAASFFACLVMIAYGVSAFFSYQAWRGVGSN
AATSQMAGGYA

>gi568815582f:57104659_57338972|GENSCAN_predicted_CDS_5|936_bp
atggccgagttcccgtcgaaagttagcacgcggaccagcagtcctgcgcagggcgccgaa
gcctcggtgtcggcgctgcgcccggacctgggcttcgtgcgctcccgcctcggggcgctc
atgctgctgcagctgggcgcttcccgcacggacgcccccaagatcgccctgcatccctct
caccacgacactaccccgtggccgtcgctgcgagcgcctcctgagtatctgggacgacag
ggggtgaaggggtctgcccaaggcccctcagcctatgaggagctgagggagtgcagctcc
aagggagatctgagggctgggctggatttctggggcctcctgtgggagcaccaccgcctt
atctgtcagggcagggttctggtctctgtcatggttgaagaaataggattgttagttcct
aagcacattgtgtatttagcgtatattatgtgtcgggcactgttgggcactgaagataca
gcagtgaacaaaacccagaatcttcctcggagagcagggaaggtgctggggctgctggtg
tgggcgctgattgcggacaccccgtaccacctgtatccggcctatggctgggtgatgttc
gtcgctgtcttcctctggctggtgacaatcgtcctcttcaacctctacctgtttcagctg
cacatgaagttgtacatggttccctggccactggtgttaatgatctttaacatcagcgcc
accgttctctacatcaccgccttcatcgcctgctctgcggcagttgacctgacatccctg
aggggcacccggccttataaccagcgcgcggctgcctcgttctttgcgtgtttggtgatg
atcgcctatggagtgagtgccttcttcagctaccaggcctggcgaggagtaggcagcaat
gcggccaccagtcagatggctggcggctatgcctaa

>gi568815582f:57104659_57338972|GENSCAN_predicted_peptide_6|88_aa
MLYDRINDEKSRNRPFSQDGTKGKEGSSCPPKAEAKSKALKDKKAVLKGVHSHIKKKIHT
SPIFPWPRRCDSRGSPDILRRAPQEKQA

>gi568815582f:57104659_57338972|GENSCAN_predicted_CDS_6|267_bp
atgctatatgatagaataaatgatgaaaaatctcgaaatagacccttttcacaagatggc
accaaaggcaaagaaggaagctcctgcccccctaaagctgaagccaaatcgaaggctttg
aaggacaagaaggcagtgctgaaaggtgtccacagccacataaaaaagaagatccacaca
tcacccatcttcccgtggccaagacgctgcgactccagaggcagcccagatatcctcaga
agagcaccccaggagaaacaagcttga