GENSCAN 1.0	Date run:  5-Nov-116	Time: 01:00:38

Sequence gi568815582f:56609352_56784042 : 174691 bp : 46.06% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   3497   3552   56  1  2   87   75    46 0.470   3.96
 1.02 Intr +   7734   7970  237  0  0   83   46   129 0.820   4.93
 1.03 Intr +   8037   8239  203  0  2   40   95    84 0.715   3.23
 1.04 Term +   9238   9329   92  2  2  134   41   100 0.750   7.78
 1.05 PlyA +   9447   9452    6                               1.05

 2.00 Prom +  14569  14608   40                              -2.86
 2.01 Init +  16501  16528   28  0  1   76   95    19 0.803   1.21
 2.02 Intr +  17115  17223  109  1  1  130   47    83 0.926   7.74
 2.03 Term +  17529  17649  121  0  1  130   36   105 0.954   7.45
 2.04 PlyA +  17739  17744    6                               1.05

 3.00 Prom +  19389  19428   40                              -7.36
 3.01 Init +  22626  23157  532  2  1   95   62   115 0.641   4.62
 3.02 Intr +  23989  24054   66  2  0  145   70    40 0.980   6.78
 3.03 Term +  24400  24491   92  2  2  131   41   102 0.981   7.68
 3.04 PlyA +  24609  24614    6                               1.05

 4.00 Prom +  25603  25642   40                              -9.16
 4.01 Init +  26467  26494   28  0  1   76   99    31 0.947   2.80
 4.02 Intr +  27088  27196  109  2  1  139   53    80 0.783   8.94
 4.03 Intr +  28765  28933  169  1  1  -28   47   150 0.391  -0.75
 4.04 Intr +  29342  29415   74  1  2   66   95    86 0.860   5.30
 4.05 Intr +  29913  29978   66  0  0  157   70     2 0.787   3.32
 4.06 Term +  30508  30628  121  1  1  136   43    74 0.889   5.65
 4.07 PlyA +  30717  30722    6                               1.05

 5.00 Prom +  32399  32438   40                              -3.06
 5.01 Init +  34019  34178  160  1  1   82   66   104 0.865   7.59
 5.02 Intr +  34586  34657   72  0  0   54   75    72 0.717   1.88
 5.03 Intr +  34760  34825   66  0  0  158   70    44 0.973   8.48
 5.04 Intr +  39475  39540   66  2  0  130   70    56 0.731   6.88
 5.05 Term +  40072  40163   92  2  2  133   44    48 0.733   2.78
 5.06 PlyA +  40285  40290    6                               1.05

 6.00 Prom +  42499  42538   40                              -1.46
 6.01 Init +  42603  42630   28  2  1   46  110    24 0.642   0.20
 6.02 Intr +  43220  43285   66  0  0  137   65    39 0.959   5.38
 6.03 Term +  43623  43714   92  1  2  137   41    74 0.983   5.48
 6.04 PlyA +  43833  43838    6                               1.05

 7.00 Prom +  46252  46291   40                              -5.36
 7.01 Init +  48708  48735   28  2  1   59   95    31 0.654   0.91
 7.02 Intr +  49324  49412   89  2  2  125    2    71 0.473   1.89
 7.03 Intr +  51071  51201  131  1  2   55   93   141 0.759  10.79
 7.04 Term +  53820  53946  127  0  1   97   52   142 0.930   9.26
 7.05 PlyA +  54794  54799    6                               1.05

 8.09 PlyA -  55714  55709    6                               1.05
 8.08 Term -  57619  57490  130  0  1  142   46   111 0.961   9.95
 8.07 Intr -  58029  57918  112  1  1  111   53    81 0.552   6.34
 8.06 Intr -  61060  60957  104  0  2  110  115    18 0.002   6.52
 8.05 Intr -  66146  66017  130  0  1   50    3   115 0.000  -1.05
 8.04 Intr -  72856  72742  115  1  1  126   89    14 0.009   5.32
 8.03 Intr -  73279  72990  290  2  2   77   60   110 0.010   4.06
 8.02 Intr -  82875  82799   77  2  2   93  106    19 0.080   3.36
 8.01 Init -  88675  88587   89  1  2   69   37    60 0.033  -0.84
 8.00 Prom -  92083  92044   40                              -0.06

 9.00 Prom +  94694  94733   40                              -6.76
 9.01 Init +  98057  98067   11  1  2   68   77    15 0.200  -2.19
 9.02 Intr +  99414  99548  135  0  0   90   99    40 0.386   4.98
 9.03 Intr + 103813 103920  108  1  0   78   78    84 0.464   5.80
 9.04 Intr + 135534 135667  134  0  2   17   79    71 0.403  -0.61
 9.05 Intr + 138883 139075  193  2  1   91   69   142 0.899  11.15
 9.06 Intr + 149187 149304  118  0  1   81  110    23 0.071   4.27
 9.07 Term + 162773 162835   63  1  0   57   55    77 0.007  -0.81
 9.08 PlyA + 163342 163347    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  35359  35414   56  2  2  128   48    49 0.908   2.62
S.002 Init -  58642  58615   28  1  1   69   95    36 0.982   2.28
S.003 Intr +  61155  61263  109  1  1  104   53    82 0.944   5.64
S.004 Term +  61547  61676  130  2  1  129   47    65 0.933   4.15
S.005 Intr +  73814  73879   66  0  0  124   70    33 0.851   3.98
S.006 Term +  74607  74698   92  1  2  145   44    73 0.922   6.48
S.007 Term + 140595 140727  133  0  1  102   32    87 0.843   2.06


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815582f:56609352_56784042|GENSCAN_predicted_peptide_1|195_aa
MGILSEVDVTVFHLKAVYSSGLPRDEAGVAHRLREWRNTADGVVGVGISRPPEAGFPERS
GTEMASNHKEMGNMGKLRGQDGTDAADDRAHRPERASDPSTYPQEAQTQRGGCKRGAGPL
RPVPSPPAKGAAGSRLQRAFQLPDCLFASPVISWLEMDPNCSCATGCCSCCPMGCAKCAQ
GCVCKGASEKCSCCA

>gi568815582f:56609352_56784042|GENSCAN_predicted_CDS_1|588_bp
atgggaattctgtcagaagttgatgttacagtctttcatctgaaggcggtctacagctca
ggcctacccagggacgaagctggggttgcacaccggctccgggaatggcgaaataccgca
gatggggtggtgggggtgggaatatcgcgaccaccagaggctgggttcccggaacgctcg
gggacggagatggccagcaaccacaaggaaatggggaatatggggaagttgcgcgggcag
gacggcacggacgccgcggacgaccgggcgcacaggcctgagcgagcgagcgatccctcc
acgtacccacaggaggcccagactcagcggggcgggtgcaagcgcggggcggggcctctg
cgtccggtcccatctccgcctgcaaaaggagcagctggctccaggctccaacgtgccttc
cagctgcctgactgcctcttcgcctctcccgtcatttcttggctcgaaatggaccccaac
tgctcctgcgccactggctgctgctcctgctgccccatgggctgtgccaagtgtgcccag
ggctgcgtctgcaaaggggcgtcggagaagtgcagctgctgtgcctga

>gi568815582f:56609352_56784042|GENSCAN_predicted_peptide_2|85_aa
MDPNCSCATGGSCTCAGSCKCKECKCTSCKKSECGAISRNLGLWLRLLFLLPRGLCQVCP
GLRLQRGIGEVQLLCLMWEQLFSQM

>gi568815582f:56609352_56784042|GENSCAN_predicted_CDS_2|258_bp
atggaccccaactgctcttgcgccactggtggctcctgcacgtgcgccggctcctgcaag
tgcaaagagtgcaaatgcacctcctgcaagaagagtgagtgcggggccatctccaggaat
ctggggctgtggctcaggctgctgttcctgctgccccgtgggctgtgccaagtgtgccca
gggctgcgtctgcaaaggggcatcggagaagtgcagctgctgtgcctgatgtgggaacag
ctcttctcccagatgtaa

>gi568815582f:56609352_56784042|GENSCAN_predicted_peptide_3|229_aa
MEIYLQRRTWTNVPPHPLRRREWTGERGRPVFPVLLCTEEPVRGTAVWTGTGKAGKEEKR
KPHWWRVLCTRLAPYHTPPAPHTTDPGTGAGGLHRDSGTGPVENGGARGWGGDARDAKAG
VPESAGRRVEGKGNFGETGKGGRDLGDTAYHPAHSPSRANPSQRGGRAAHSERSSGDGVS
CACTGSCTCKECKCTSCKKSCCSCCPVGCAKCAHGCVCKGTLENCSCCA

>gi568815582f:56609352_56784042|GENSCAN_predicted_CDS_3|690_bp
atggagatttatctgcaaaggaggacctggacaaatgttcccccacatcctctcaggcga
agagaatggacgggagagagaggccgaccagtgttccccgtgttgctgtgtacggaggag
ccagtccgagggaccgcggtgtggacagggacaggcaaggcggggaaggaggagaaacga
aagccacattggtggcgggtgctctgcacacgactcgctccctaccacacgccccccgct
ccgcacacgaccgatccggggactggagcaggagggctgcaccgggactccgggacaggc
ccagttgaaaacggcggggcgagggggtggggtggagacgcccgcgacgccaaggctggg
gtcccggaaagcgcggggaggagggtggaaggcaaaggcaacttcggggaaactgggaaa
ggcggccgggacctcggggacactgcgtaccacccggcgcacagcccctcccgcgcaaac
ccgagccaaaggggcggtcgagcggcgcactcggagcggagctcaggggatggtgtctcc
tgcgcctgcaccggctcctgcacgtgcaaagagtgcaaatgcacctcctgcaagaagagc
tgctgctcctgctgccccgtgggctgtgccaagtgtgcccacggctgtgtctgcaaaggg
acgttggagaactgcagctgctgtgcctga

>gi568815582f:56609352_56784042|GENSCAN_predicted_peptide_4|188_aa
MDPNYSCTTGGSCTCAGSCKCKECKCTSCKKSECGAISRNLGLWLRDRQGDSEEKRKSHR
WRLLCTQLARYRTLHALHYADPGTGAGGCGCTQTSGQAELKTPLNFLLGISNLTAARNGP
QLLLRHWWLLHLHWLLQMQRVQMHLLQEELLLLLPHELCQVCPGLHLQRGIREVQLLCLM
SGQPCSKI

>gi568815582f:56609352_56784042|GENSCAN_predicted_CDS_4|567_bp
atggaccccaactactcctgcaccactggtggctcctgcacgtgcgccggctcctgcaag
tgcaaagagtgcaaatgcacctcctgcaagaagagtgagtgcggggccatctccaggaat
ctggggctgtggttaagggacaggcaaggcgacagcgaggagaaacgaaaatcacatcgg
tggcggttgctctgcacacaactcgctcgctaccgcacgctccacgctctgcactacgcc
gatccggggacaggagcaggaggctgtggctgcactcagacttcgggacaggccgagctg
aaaacccctctcaacttcttgcttgggatctccaacctcaccgcggctcgaaatggaccc
caactgctcctgcgccactggtggctcctgcacctgcactggctcctgcaaatgcaaaga
gtgcaaatgcacctcctgcaagaagagctgctgctcctgctgccccatgagctgtgccaa
gtgtgcccagggctgcatctgcaaaggggcatcagagaagtgcagctgctgtgcctgatg
tccggacagccctgctcgaagatatag

>gi568815582f:56609352_56784042|GENSCAN_predicted_peptide_5|151_aa
MECNLREIREGRDYSRDAAYRQEHSPSKASVSQRAAPRVRNSHVKEDPAPGPPVPPISEA
RGLRLKTARLQVTLKAKGGSCTCASSCKCKEYKCTSCKKTGSCTYASFCKCKEYKCTSCK
KNCCSCYPVGCAKCAQGCICKGASDKCSCCA

>gi568815582f:56609352_56784042|GENSCAN_predicted_CDS_5|456_bp
atggagtgcaatctccgggaaattcgggagggccgggattatagcagggacgccgcgtac
cgccaggagcacagcccctccaaagcgagcgtgagccaaagggccgcccccagggtgcgc
aacagccacgttaaggaggatcctgcgcccggcccgcctgtgcctccgatttctgaggcg
agaggactgaggctgaaaactgcccggctgcaggtcaccctcaaggccaaaggtggctcc
tgcacctgtgccagctcctgcaaatgcaaagagtacaaatgcacctcctgcaagaagact
gggtcctgcacttatgccagcttctgcaaatgcaaagagtacaaatgcacctcttgcaag
aagaactgctgctcctgctaccctgtgggctgtgccaagtgtgcccaaggctgcatttgc
aaaggggcatcagataagtgcagctgctgtgcctga

>gi568815582f:56609352_56784042|GENSCAN_predicted_peptide_6|61_aa
MDPNCSCTTGGSCACAGSCKCKECKCTSCKKCCCSCCPVGCAKCAQGCVCKGSSEKCRCC
A

>gi568815582f:56609352_56784042|GENSCAN_predicted_CDS_6|186_bp
atggatcccaactgctcctgcaccacaggtggctcctgtgcctgcgccggctcctgcaag
tgcaaagagtgcaaatgtacctcctgcaagaagtgctgctgctcttgctgccccgtgggc
tgtgccaagtgtgcccagggctgtgtctgcaaaggctcatcagagaagtgccgctgctgt
gcctga

>gi568815582f:56609352_56784042|GENSCAN_predicted_peptide_7|124_aa
MDPNCSCAAGVSCTCAGSCKCKECKCTSCKKSECEAISMGSKVTGDVEESVISATQSHEK
DWVQMKDVECADAVVMAYSAVGRWSRYPHPPPCTFVISFASPVSVCSSILVLAFFIGGSW
EPRE

>gi568815582f:56609352_56784042|GENSCAN_predicted_CDS_7|375_bp
atggaccccaactgctcctgcgccgctggtgtctcctgcacctgcgctggttcctgcaag
tgcaaagagtgcaaatgcacctcctgcaagaagagtgagtgtgaggccatctccatgggc
agcaaagtgactggagatgtggaggaaagcgtcatctcggcaacgcagagtcatgagaag
gactgggtgcagatgaaggatgttgagtgtgctgatgcagtggtgatggcatattctgca
gttggaaggtggtcgcgttatcctcatcccccgccctgcaccttcgtcatcagctttgcc
tctcccgtgtccgtgtgtagctccatcctcgtgctcgccttcttcattggcggaagctgg
gagccgagagagtga

>gi568815582f:56609352_56784042|GENSCAN_predicted_peptide_8|348_aa
MEAAYKPGGWPSSEPNHAGTLISDFWPPELDSAHVTHQTLKSHFGLLQTLNPCQERRVCT
VAGKRASQGAELGVPYQASRSSWGPFRGKEKQEFPIKRKTRSGTDEKRGGAQKPAALFIV
REEGRAQRPRLVLAPAPAESAPPAILGRVQQPACRETRNPGGLHTPSPRSTVCSFAFPRV
PGSRPWIGGSVLRDFPGLPATPLQDGSFENEGCPPKRMTLGDMQTLRSIKERSGASRQSS
FPTQQKKRRPISSPFMLGKPSTLRLYSKAGVSCTCASSCKCKECKCTSCKKSECGAISRN
LGLWLRLLLLLPCGLCQVCPGLHLQRGIGEVQLLRLMSGQPCSQVQIE

>gi568815582f:56609352_56784042|GENSCAN_predicted_CDS_8|1047_bp
atggaagctgcctacaagccaggaggatggccttcctcagaacccaaccatgctggcacc
ctgatctcggacttctggcctcctgaactggattcagcccatgtgacccaccagactctg
aagagccactttggactgttacaaactttgaatccttgccaggaaagaagagtctgtact
gtggctgggaaacgggcatcccaaggcgcggagctaggtgtcccttaccaggcgagcagg
agcagttggggtccatttcgaggcaaggagaagcaggagttcccgatcaagaggaaaaca
cgcagcgggacagatgaaaagcgtggtggagcccagaagccggcggctctctttatagtc
cgggaagagggccgggcgcagaggccccgcctcgtccttgcacccgcccctgctgagtct
gcaccgcccgcgatcctgggccgggtgcagcaacccgcgtgccgggaaactcggaatccc
ggcggtctacacacccccagcccccgctccactgtgtgtagctttgcatttcccagagtc
cctggatcacgtccctggatcggcgggagcgttctccgggactttccaggcctgccggcc
accccactgcaggatggcagttttgaaaatgagggatgccctccaaagaggatgacttta
ggtgacatgcagaccctgcggtcaatcaaggagagaagtggggccagccgtcagagctcc
tttcccactcagcagaagaagagaagacccatctcctctccattcatgctgggaaaacca
agcaccctccgtttgtattccaaagcaggtgtctcctgcacctgcgccagctcctgcaag
tgcaaagagtgcaaatgcacctcctgcaagaagagtgagtgcggggccatctccaggaat
ctggggctgtggctaaggctgctgctcctgctgccctgtgggctgtgccaagtgtgccca
gggctgcatctgcaaaggggcatcggagaagtgcagctgctgcgcctgatgtcgggacag
ccctgctcccaagtacaaatagagtga

>gi568815582f:56609352_56784042|GENSCAN_predicted_peptide_9|253_aa
MLASSLGLHMRDLLEEQKKPNMEGESLGLIQGALEQIPPTELSCCGASSNRNLTSVWDID
IQPKPHFPDYLAAKSGHMTVLSDDFGCPFGKGVQEAFEKDRLSPTEEKTPPIHSKNEYLL
CARHCCRSLGSASPMDTEGFGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRSR
TLTRTSQETADVKASVLLGSRGLDISHISQRLESLSAATTFEPLEPVKDTDIQTGCQQEL
PLLMGVYRMPQRY

>gi568815582f:56609352_56784042|GENSCAN_predicted_CDS_9|762_bp
atgttggccagctccttagggctccacatgcgtgacttattagaggagcaaaagaagccg
aatatggaaggggaaagccttggcctgatccagggtgctctagaacaaattcctcccact
gaactgtcctgctgtggggcaagcagtaataggaacctcacaagtgtctgggacatagac
atacagccaaaaccacatttcccagactatctggcagccaagagtggccacatgaccgtt
ttgtccgatgattttgggtgcccatttggcaaaggagtgcaggaagcctttgagaaggac
agactctcaccaacggaagaaaaaacacctcctattcattcaaaaaatgagtacctgcta
tgtgccaggcactgttgtagaagcttgggatctgcatctccaatggatactgaggggttt
ggtgagctccttcagcaagctgaacagcttgctgctgagactgagggcatctcagagctt
ccccatgtggaacggaacttacaggagatccagcaggcgggagagcgcctgcgttcccgt
accctaacacgcacgtcccaggagacggcagatgtcaaggcgtcagttctcctcgggtct
cggggacttgacatatcccacatctcccagcgattggagagtctgagtgcagccaccacc
tttgagcctcttgagcctgtgaaggacactgacattcagactggctgtcagcaggagctg
ccattgctaatgggagtgtaccggatgcctcagcggtattga