GENSCAN 1.0	Date run:  6-Nov-116	Time: 12:13:56

Sequence gi568815581r:78576094_78774742 : 198649 bp : 47.08% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.05 PlyA -    161    156    6                               1.05
 1.04 Term -    519    467   53  1  2  103   31    70 0.223   0.39
 1.03 Intr -   3989   3807  183  0  0    1   96   144 0.405   6.26
 1.02 Intr -  15059  14937  123  0  0   61   91    67 0.748   4.86
 1.01 Init -  15292  15277   16  1  1  114   78     8 0.426   2.84
 1.00 Prom -  17237  17198   40                              -4.36

 2.25 PlyA -  20200  20195    6                               1.05
 2.24 Term -  25837  25679  159  1  0   94   44    82 0.551   2.34
 2.23 Intr -  26405  26153  253  1  1   99   47    83 0.590   2.74
 2.22 Intr -  28383  28304   80  0  2   60   86    60 0.127   1.35
 2.21 Intr -  31365  31257  109  2  1   72   80    64 0.247   4.29
 2.20 Intr -  33910  33729  182  1  2   69   28   119 0.218   2.67
 2.19 Intr -  35251  35144  108  1  0   74   88    44 0.123   3.48
 2.18 Intr -  40325  40202  124  1  1   73   37    92 0.131   3.19
 2.17 Intr -  41158  40783  376  2  1   55  -11   215 0.063   2.37
 2.16 Intr -  42115  41785  331  1  1   64  105   113 0.465   5.80
 2.15 Intr -  42951  42856   96  0  0  115   31    69 0.473   4.11
 2.14 Intr -  46772  46638  135  2  0   79   53    70 0.841   3.36
 2.13 Intr -  47712  47461  252  0  0   63   47   122 0.617   3.23
 2.12 Intr -  48222  48099  124  2  1  112  107    59 0.993  10.79
 2.11 Intr -  52345  52225  121  2  1   67   95    86 0.993   6.75
 2.10 Intr -  54108  53939  170  2  2   60   59   149 0.807   8.79
 2.09 Intr -  61376  61232  145  0  1  101   97    59 0.651   7.44
 2.08 Intr -  65391  65370   22  0  1   63  109    10 0.386  -2.28
 2.07 Intr -  65605  65501  105  1  0   49   87    84 0.322   4.81
 2.06 Intr -  82615  82437  179  2  2   49   85    70 0.162   2.44
 2.05 Intr -  88139  88014  126  0  0   74   56    46 0.207   0.65
 2.04 Intr -  88758  88662   97  0  1   64   99     5 0.255  -1.22
 2.03 Intr -  91824  91582  243  0  0   47   32   185 0.424   6.49
 2.02 Intr -  92280  92077  204  0  0   53  105   138 0.971  11.40
 2.01 Init -  93104  92970  135  2  0   82   75    37 0.557   1.94
 2.00 Prom -  96330  96291   40                              -6.86

 3.17 PlyA -  97628  97623    6                               1.05
 3.16 Term - 100076  99998   79  1  1  109   53   111 0.510   6.94
 3.15 Intr - 101227 101061  167  1  2  106   44    43 0.395   0.46
 3.14 Intr - 101493 101367  127  2  1   51   59    74 0.718   1.48
 3.13 Intr - 104251 104097  155  1  2   99   97   175 0.997  18.37
 3.12 Intr - 104949 104878   72  0  0   94   81    70 0.984   6.50
 3.11 Intr - 116400 116324   77  1  2  124  101    22 0.756   6.33
 3.10 Intr - 117918 117880   39  1  0   78   64    70 0.602   1.80
 3.09 Intr - 122287 122176  112  1  1   42  111    84 0.981   6.05
 3.08 Intr - 122875 122727  149  2  2  105  102   227 0.999  25.75
 3.07 Intr - 124350 124238  113  2  2   52   66   180 0.997  12.22
 3.06 Intr - 125658 125578   81  2  0   88  113    70 0.997   8.25
 3.05 Intr - 126147 126029  119  0  2   75   94   202 0.999  18.76
 3.04 Intr - 126511 126445   67  0  1   68  115    39 0.900   3.51
 3.03 Intr - 132168 132104   65  0  2  100  113    74 0.957   8.62
 3.02 Intr - 133639 133557   83  2  2   66   91   171 0.918  14.56
 3.01 Init - 134257 134248   10  1  1   76   86     3 0.896  -0.34
 3.00 Prom - 137008 136969   40                              -6.16

 4.00 Prom + 138785 138824   40                              -7.66
 4.01 Init + 139599 139675   77  2  2   81  113    24 0.075   4.78
 4.02 Intr + 147864 148012  149  0  2   87   47    57 0.092   1.38
 4.03 Intr + 149508 149608  101  1  2   69   54    78 0.468   2.33
 4.04 Intr + 159439 159552  114  0  0   93   59    52 0.437   3.44
 4.05 Intr + 165716 165907  192  1  0   77   84    75 0.573   5.69
 4.06 Intr + 168290 168382   93  1  0  101   81     0 0.365   0.76
 4.07 Term + 189335 189433   99  1  0   66   44   107 0.677   2.23
 4.08 PlyA + 189748 189753    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  69340  69471  132  0  0   84  113   104 0.952  12.64
S.002 Term +  73959  74102  144  2  0   68   52    94 0.840   1.71
S.003 Term - 112441 112251  191  2  2   59   44   130 0.877   3.31


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581r:78576094_78774742|GENSCAN_predicted_peptide_1|124_aa
MAEVTGALKASTLGPDPPVPLILKASQVILPVAKQRTSALSYTCHSAILSVQFRGTEYTY
IVVKTPPPSISRTSSLSQIETLTLLPERGPDPDPKRGFLDLVQEEIQGNDDVTRPRVSEI
LGGD

>gi568815581r:78576094_78774742|GENSCAN_predicted_CDS_1|375_bp
atggcagaggtgacaggtgctttgaaagcctccacgcttggccccgaccctccagtgccc
ttaattctcaaagcgtcccaggtgattctgcccgtggctaagcagagaacctcagcctta
agttacacctgccactcagccattttaagtgtacagttccgtggcactgagtacacttac
atcgttgtaaaaacaccaccaccatccatctctagaacttcttcactatcccaaattgaa
actctgaccctgttaccagaaaggggtccagatccagaccccaagagagggttcttggat
ctcgtgcaagaagaaattcagggaaatgacgacgtgacgcgtccccgggtctcggagatc
ctgggtggagattaa

>gi568815581r:78576094_78774742|GENSCAN_predicted_peptide_2|1291_aa
MEGEGEIRMSPKCWAWAADKDRLGLEIQVLFWRCQEEDDSYNGRQNEGENGVIISIDAGK
ALDEMKLHQEIHPTGQAQKEPFQHKQGLLRDTLETVSSPPSQAPKKDWGKSSLGSGSRHM
PLSNLVEDLSQYKAIYENTTANLILNGERLEAFPLRSGSRQGCLLLPLLLNMVLDVLARA
IRQEKEGLQVGKEKPCSSHGTEGTWNAAALALLIPSHGSRPPLSQPASGAPFRSQEKGWR
PLSSHIVLGTVGDSRHHTSQPEPIGLTQGGTWQPVAREQLHLGAGAIPGHPDPVTAYEAP
ESHVFLNFPKSTTGACQKDVTRMNRLLLNRPLTTDDIVFRQWWQFLKDQMSQPDWLALFL
MIKNSIGFSAGRPDEGFRASKTELYTREQLIQRKGRTVLPGQPWKGFSGGHHQGVGTPRC
DVCGSPSPPCLLWNLHNDRCFGGQSACVRALHTLNVTGNKDTPRFQEKIEHVDPFYHMTH
YQTKPELLVFGSGDEFFSTDGTMNFYDQLPGRKYLRAIPSAGHAIDFHETNTYLEIRFFL
YLLKEQEFPSISWTKTEMSGAGGYLHSIETCLCLSEDGQKQTQEELRNCTGQVQPGGGTD
HRTQEASRSQMQQIEAACLTACEMQGEEDVYVTEPIGHSMEGPQCGPGTAFMGIIGKPHG
KAQADHLIGGQYPSLPADPGRACGTPAPGAYRKELEVPSAGWEASFIEVTSLDAGLAEIL
STEEARMELLLTRADLLLVTYSWAKSEKPLPALGKADGAAQQAGFAHRLRYHPTQSARLC
GPLIYILICQQDGVGYAVFAQRSDPRDICVGVCPGAACLQVQIGVSFAVGINALELLGLC
LHKLPLPVSSEKSYCGDTEWGRQSTVSYHDTKLVAGPRGHEGGEGAPSTVQPMRRSDPLC
PPVTSGPSQSPLAGKNRQHLRPLGVSVNSDRGSNSPEMSASSLFPAYTLTHVRSLVISVD
TQEAVEDSIPRAPQMHQCPSNASARGVLWTFLGTMHAIDFHVKETLLAIDSFFPRLLMGQ
TFPSVSRAKIEGPQPTRRPGCCYWHQLRQALDLSLAVGCRGPAEDMFWVHTEDYAQPPRI
QKIGNGASYATLGELGQAQEEFLKGAGRREQEDEIKDNGKDEWCLESQQLHLLLEMDEDF
PDENKQRLSTQSSLGPCGSANPRLLNLVGVDEKGSWEGPGSQHCPHSDFEVPGGQHAYWE
RELSQMPRALKTGLDVSKGEKLPSSRHSFYHGNNCQNQHGRLSAVCKLEFMGTLYFSLLG
IRERWAPGCPSAPSLVMTLESPDLDLRRFSL

>gi568815581r:78576094_78774742|GENSCAN_predicted_CDS_2|3876_bp
atggagggagaaggagaaatcaggatgagtcctaagtgttgggcctgggcagccgacaag
gacagacttgggctggaaatccaggttctcttctggaggtgtcaagaagaggatgactct
tataatggccggcagaatgaaggagaaaacggggtgatcatctccatcgatgcaggaaaa
gcattggacgaaatgaaactccaccaggaaatacacccaacggggcaggcgcagaaggaa
ccctttcaacacaagcaaggcctactgcgggacacacttgagacagtatcgtcccctcct
tcccaggccccaaagaaggactggggcaagtccagcctgggttcaggcagcagacatatg
cccttaagtaacctggtggaggacctgtcacagtacaaggccatctatgaaaacaccaca
gccaacctcatactcaacggagagagattggaagcttttcctctaagatcaggatcaaga
caaggatgcctgcttttgccacttctcctcaacatggtcctggatgttctagccagggca
attaggcaagaaaaagaaggtctccaagttggaaaggaaaaaccctgctccagccatggg
actgaggggacctggaatgctgctgccttagccctgctcattcccagccatgggtctcgc
ccacccctctcccagccagcatctggtgcaccctttcggtcacaggaaaaggggtggaga
ccactaagttctcacattgtgctgggcaccgtcggtgacagcagacatcacacatcacag
cccgagcccattggcctcactcaaggaggaacgtggcagcctgtggcccgtgagcagctg
cacttgggggctggggccattccagggcacccggatccggtgactgcatatgaggctcct
gaatctcatgttttcctaaactttccaaaatcaacaacaggtgcctgccagaaggacgtt
actcgaatgaacagactactgttgaatcgtccactgaccacagatgacatcgtgttcagg
cagtggtggcagttcctcaaggaccaaatgtcccagccagattggttggccttgttcctg
atgatcaagaattccataggcttctctgcaggaaggcctgatgaagggttcagagctagc
aagacagaactctacacgagggagcaactaattcagagaaagggccggactgtccttccc
ggacaaccctggaaaggcttctcgggggggcaccatcagggtgttggaacgccaaggtgt
gatgtctgcggctcaccatctccaccctgcctgctgtggaatctccacaacgacaggtgc
tttggaggccagagtgcatgcgtacgggccctgcacacgctgaatgtcactgggaacaag
gacacaccccgcttccaggagaagatagaacatgtcgaccccttttaccatatgacacat
tatcagaccaaaccagagctcttggttttcggatctggggatgaattctttagcacagat
ggaaccatgaacttctatgatcaactgccaggaaggaaatacctcagagccatccccagt
gcaggacatgctattgacttccatgagacaaacacctacttggaaatcaggttttttctg
taccttttgaaggagcaggaatttcccagcatttcctggacaaagacggagatgtcgggg
gcaggtgggtatttgcattccattgaaacctgtctgtgcttgtcagaggatggccagaag
cagacccaggaggagcttcggaactgcacggggcaggtgcagcctgggggtggcacggac
cacagaacacaagaggcatccaggagtcagatgcagcagatagaggccgcgtgcctcacc
gcctgtgaaatgcagggagaggaggatgtttatgtcactgagcccatcgggcacagcatg
gaaggtccgcagtgtggtcctgggactgccttcatgggcatcataggaaagccacacggc
aaggcccaggctgaccatctaatcggaggacagtacccctcgcttcctgcagaccccggg
cgggcatgtggcaccccagctcctggggcctacagaaaggagctggaggtgcctagtgca
ggctgggaggcctcctttattgaggtgacatccctggatgctggcttggcggagattctt
tccactgaggaggcaaggatggagttgctgctgacccgtgcagatttgctgctggtaaca
tactcatgggcaaagtctgaaaaacctcttcctgccctgggcaaggcagatggggcagcc
cagcaggctggctttgcccaccgtctccgatatcatccaacacagtcagccaggttgtgt
ggccctctcatctacattctcatttgccaacaagatggtgtgggctatgctgtctttgca
cagcgatctgatcccagggacatttgtgtgggtgtgtgcccgggagctgcatgtctgcag
gttcagattggggtcagctttgctgttgggatcaatgcccttgaacttctaggcctgtgc
ctgcacaagctgcccctccccgtgtcttcggagaagtcctactgcggggacacagagtgg
gggaggcaaagcaccgtcagctaccatgacacgaagcttgttgctggacccagaggacat
gaaggaggggaaggggctcccagtacagtccaacccatgcgccgctcagacccgctctgc
cctcccgttacttctggcccatcacagagccccctagctggcaagaatcggcagcatttg
aggcctcttggtgtcagtgtcaactcagaccgtggatccaacagccctgaaatgtctgca
tcctcccttttcccagcgtatactctgacacatgtccgtagtcttgtcatctctgttgac
actcaggaggctgtggaggacagtatccctcgagcaccccagatgcaccagtgcccctct
aatgcttcagccagaggggtcctctggaccttcttagggacaatgcatgcaattgatttc
catgtcaaagaaaccctactggccatcgacagctttttcccaagacttctgatggggcaa
acatttcccagtgtttcccgggcaaagatagagggtccccagcccacacgcaggcccgga
tgctgttactggcatcaacttcgccaggctctggacctatctttggctgtcggctgccga
ggaccagcagaagacatgttctgggtacacacagaggactatgctcaaccgccaaggatt
cagaaaataggaaatggagcttcttatgccactctgggagagcttgggcaggcccaggag
gaatttctgaaaggagccgggaggagagaacaagaggacgagataaaagataatggaaaa
gacgaatggtgtttagaaagccagcagctccatcttctcctggaaatggatgaagacttc
ccagatgagaacaagcagaggctgtctactcagagctcgctaggaccctgcggctctgca
aatccccggctgctcaaccttgtcggggtggatgagaaggggtcctgggaggggcctggg
agccagcattgcccccactcagattttgaagtccctggtgggcaacatgcatattgggag
agggagctgagccaaatgcctcgggccctcaagacaggcttagatgtctccaagggggaa
aagcttccttcgtccaggcattccttctatcatggaaacaactgtcagaaccagcatggg
agactttcagctgtttgtaagttggagttcatgggcactctgtacttttccttactagga
atcagagaaaggtgggcccctgggtgtccttcagcaccaagcctggtcatgacgctggaa
tctcccgacctggaccttcgcaggttctcgctgtga

>gi568815581r:78576094_78774742|GENSCAN_predicted_peptide_3|504_aa
MKKVPSDLTAEERQELENIRRRKQELLADIQRLKDEIAEVANEIENLGSTEERKNMQRNK
QVAMGRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFNI
QVLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNNGVFQSTD
TCYVLSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLRNLYESIKNEPF
KIPEDDGNDLTHTFFNPDREGWLLKLAICDEGKRESMIGGGRVKTWKRRWFILTDNCLYY
FEYTTDKEPRGIIPLENLSIREVEDSKKPNCFELYIPDNKDQVIKACKTEADGRVVEGNH
TVYRISAPTPEEKEEWIKCIKGTAVELRVSGNSGCHRVCRLGAEMCSLNMGSLFDSPEPR
EVEGSATRTSLQNPPAYPKGLAYPGSQGRFTPTPPNMKAGVPAARFPRESTSGGQTASQA
AISRDPFYEMLAARKKKVSSTKRH

>gi568815581r:78576094_78774742|GENSCAN_predicted_CDS_3|1515_bp
atgaagaaagttcccagtgacctgacagcagaggagcgtcaagaactggagaacatccga
cggagaaaacaggagctgctggctgacattcagaggctgaaggatgagatagcagaagta
gctaatgaaattgaaaacctgggatccacagaggaaaggaaaaacatgcagaggaacaaa
caggtagccatgggcaggaaaaaatttaatatggaccctaaaaaggggatccagttctta
atagagaacgacctcctgaagaacacttgtgaagacattgcccagttcttatataaaggc
gaagggctcaacaagacagccatcggcgactacctaggggagagagatgagtttaatatc
caggttcttcatgcatttgtggagctgcatgagttcactgatcttaatctcgtccaggca
ctacggcagttcctgtggagcttccggctacccggagaggcccagaagatcgaccggatg
atggaggcgtttgcccagcgatattgtcagtgcaataatggcgtgttccagtccacggat
acttgttacgtcctctcctttgccatcatcatgttgaacaccagtctgcacaaccccaat
gtcaaagataagcccactgtggagaggttcattgccatgaaccgaggcatcaatgatggg
ggagacctgccggaggagctcctccggaatctctatgagagcataaaaaatgaacccttt
aaaatcccagaagacgacgggaatgacctcactcacactttcttcaatccagaccgagaa
ggctggctattgaaactcgctatttgtgatgagggcaagagagaaagcatgatcggaggt
ggcagggtaaagacttggaagagacgctggttcattctgactgacaactgcctttactac
tttgagtataccacggataaggagccccgtggaatcatccctttagagaatctgagtatc
cgggaagtggaggactccaaaaaaccaaactgctttgagctttatatccccgacaataaa
gaccaagttatcaaggcctgcaagaccgaggctgacgggcgggtggtggaggggaaccac
actgtttaccggatctcagctccgacgcccgaggagaaggaggagtggattaagtgcatt
aaaggtacagcagtagaactgcgtgtcagcggtaacagcggctgccatcgagtgtgtcgg
ctaggcgctgagatgtgctctttgaatatgggatctctttttgactctccggaacccagg
gaggtggagggcagtgccacacgcacctctctgcagaaccccccagcttacccgaaaggg
ttggcctacccaggaagccaagggagattcaccccaacacctccaaacatgaaagcaggt
gtcccggccgccagattccctcgtgaaagcacttcaggtggtcagaccgcttcccaagca
gccatcagcagggaccctttctacgaaatgctcgcagcacggaaaaagaaggtctcctcc
acgaagcgacactga

>gi568815581r:78576094_78774742|GENSCAN_predicted_peptide_4|274_aa
MPPEWCPLGHQGRQEQLPLSGHLALRDPMPSTSTRDTPAFSPRRTRLLLSTLAATNGYFF
TRGCGIAFEDTCLLSEDSVIMCKAHYDSLFNMASFHYADRVDHSRGLPVIQKYRYGHLCM
LPSQRPPRVLQLSVSPVDTVQDHLHLEDSLRQTAGWSRTGSRAGGKRKVSGATLKPDPGG
QVSHCQEKEFGNMKRGKARKNPKVGMELKELLRPFLTSCQMGDSLGHTITQVSSKVPKNI
CKSGHREIAEVFVKVREQVEEVSVFNKSVKASVE

>gi568815581r:78576094_78774742|GENSCAN_predicted_CDS_4|825_bp
atgccccccgagtggtgtcctctgggccatcagggacgccaggaacagctccctttgagt
gggcacctggctctacgggatcccatgccctccacttccacgagggacactccagccttt
tcaccaagaaggactcgcctcctactcagtacactcgcagccaccaatggttatttcttc
accagaggctgtggcatcgcctttgaggacacctgcctattatcagaagactcagtcatc
atgtgcaaggctcactatgactctctctttaacatggccagcttccactacgccgacaga
gtggatcacagccggggtttacctgtgatacagaagtatcgttatggacacctgtgcatg
cttccctcccagcgtcccccacgcgtgctgcagctttcagtgtcgcccgtggacactgtc
caggatcatttgcacttagaggacagcctccggcagacagcaggatggagccggacagga
agtagagctggaggcaaaaggaaggtgtcgggtgcaaccctcaagccagatcctgggggc
caggtttcccactgtcaggaaaaggaatttggaaacatgaaaagggggaaggctagaaag
aaccctaaggttggaatggaattgaaggagctgcttagacctttcctaacaagctgccaa
atgggagacagcttagggcatacaatcacgcaagtgtcctccaaagtcccgaagaacatc
tgcaagtctggacacagagaaatcgcagaagtctttgtcaaagttagagaacaagttgaa
gaagtctccgtcttcaataaatcagtaaaagccagtgtggagtag