GENSCAN 1.0	Date run:  3-Nov-116	Time: 13:26:03

Sequence gi568815581r:56791703_57013988 : 222286 bp : 43.50% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 PlyA -    233    228    6                               1.05
 1.02 Term -   1358    675  684  2  0   68   35   836 0.999  69.94
 1.01 Init -   5947   5876   72  1  0   82   60   121 0.972   7.77
 1.00 Prom -   9442   9403   40                              -3.66

 2.00 Prom +  12706  12745   40                              -3.96
 2.01 Init +  15785  15803   19  1  1   39  110    36 0.312   1.09
 2.02 Intr +  17594  17701  108  0  0   39   62    85 0.084   1.26
 2.03 Intr +  21969  22012   44  1  2   89   80    35 0.070   0.76
 2.04 Intr +  31277  31376  100  1  1   56   76    73 0.005   2.58
 2.05 Intr +  41425  41582  158  2  2   34   69   162 0.013   8.63
 2.06 Intr +  43076  43557  482  1  2   88   80   797 0.121  70.73
 2.07 Intr +  52317  52476  160  0  1  129   36    53 0.884   4.19
 2.08 Intr +  56220  56363  144  2  0  133   62    63 0.994   8.68
 2.09 Intr +  56994  57151  158  2  2   55  123    55 0.966   4.51
 2.10 Intr +  57479  57530   52  2  1   90   95     8 0.939   0.61
 2.11 Intr +  64810  64923  114  0  0   84   93    43 0.913   5.04
 2.12 Intr +  70089  70216  128  2  2   60   91    47 0.972   1.68
 2.13 Intr +  70438  70549  112  1  1   88   73    65 0.824   5.38
 2.14 Intr +  85633  85737  105  0  0  106   28    90 0.377   5.21
 2.15 Term +  86326  86613  288  0  0  -61   48   457 0.796  22.18
 2.16 PlyA +  91084  91089    6                               1.05

 3.11 PlyA -  91888  91883    6                               1.05
 3.10 Term -  93139  92938  202  0  1   75   49   203 0.623  11.96
 3.09 Intr - 100527 100002  526  1  1   62   32   548 0.066  38.60
 3.08 Intr - 103739 103641   99  0  0  100   65    95 0.984   8.48
 3.07 Intr - 103902 103819   84  1  0  102  110    19 0.968   5.29
 3.06 Intr - 104250 104224   27  1  0   68   99    29 0.512   0.09
 3.05 Intr - 107478 107413   66  1  0   70  100    33 0.732   1.58
 3.04 Intr - 109876 109717  160  1  1   61   60   198 0.998  13.86
 3.03 Intr - 112786 112553  234  1  0   89   92   349 0.999  33.29
 3.02 Intr - 116861 116766   96  2  0  116  100    97 0.998  13.91
 3.01 Init - 122286 121690  597  0  0   95   75   920 0.987  86.68
 3.00 Prom - 129557 129518   40                              -2.46

 4.08 PlyA - 129699 129694    6                               1.05
 4.07 Term - 147452 147369   84  2  0  104   48    42 0.773  -0.55
 4.06 Intr - 150421 150333   89  2  2  111  100    80 0.970  11.19
 4.05 Intr - 154809 154740   70  0  1   64  105     7 0.484  -1.25
 4.04 Intr - 157732 157685   48  1  0   88  116    40 0.924   5.68
 4.03 Intr - 158065 157979   87  1  0   79   71    36 0.630   1.17
 4.02 Intr - 159294 158511  784  2  1   89   22   327 0.389  17.68
 4.01 Init - 169317 169073  245  0  2   84   85   263 0.999  22.81
 4.00 Prom - 173359 173320   40                              -3.26

 5.00 Prom + 176255 176294   40                              -5.76
 5.01 Init + 186458 186533   76  1  1   67   96   238 0.999  21.75
 5.02 Intr + 189380 189528  149  0  2   25  103   226 0.832  17.75
 5.03 Intr + 193676 193765   90  1  0  131   27    61 0.923   4.49
 5.04 Intr + 195993 196148  156  2  0   41  115   162 0.900  14.41
 5.05 Intr + 196514 196588   75  1  0   69   90    60 0.941   4.01
 5.06 Intr + 199397 199469   73  1  1  123  111    50 0.997   9.78
 5.07 Intr + 203279 203316   38  0  2   63  115    25 0.965   0.68
 5.08 Intr + 203805 203933  129  2  0   49   98   101 0.919   8.09
 5.09 Intr + 206697 206796  100  2  1   30   65    75 0.651  -0.92
 5.10 Intr + 209153 209290  138  0  0   99   49   306 0.989  28.24
 5.11 Intr + 210316 210479  164  2  2  115   95   156 0.993  18.69
 5.12 Term + 214471 214533   63  0  0   95   45    48 0.739  -0.91
 5.13 PlyA + 214767 214772    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl -  41672  41406  267  2  0   70   49   341 0.972  22.23
S.002 Term +  70910  71089  180  1  0   62   37   122 0.855   2.11
S.003 Term - 100527  99998  530  1  2   62   48   560 0.920  43.82


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581r:56791703_57013988|GENSCAN_predicted_peptide_1|251_aa
MALCYLCCLLPSLVVAHLPLLIILSPPFPLSSSSFLFFIIIITITTTNIITITITITITT
IATIITITHTIITTTITPTTITTTTTTTTITTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTSPSPPSSSSPLPPSSPSTPSSPSPPSAPSPPPPHHHYHHHHHNHHH
YYHHHNHHHHHHCHTIITTTTTTTTTIIIIITTTTIITIITITTTTITIITITATPSSPP
PPLPSQSLSLS

>gi568815581r:56791703_57013988|GENSCAN_predicted_CDS_1|756_bp
atggccctctgttatttgtgctgtctgctcccttctctggtggtagcacacctgccactc
ctcatcatcctgtctcctccttttcccctctcctcctcctccttcttgttcttcatcatc
atcatcacaatcaccaccaccaacatcatcaccatcactatcaccatcaccatcaccacc
atcgccaccatcatcaccattacccacaccatcatcaccaccaccatcacccccaccacc
atcaccaccaccaccaccaccaccaccatcaccaccaccaccaccaccaccaccaccacc
accaccaccaccaccaccaccaccaccaccaccaccaccaccaccaccaccaccaccacc
accaccaccaccaccaccaccaccaccaccaccaccaccacctcaccatcaccaccatca
tcatcgtcaccattgccaccatcatcaccatcaaccccatcatcaccatcaccaccatca
gcaccatcaccaccaccaccacatcaccattatcaccaccaccaccataaccatcatcac
tattaccatcaccacaatcaccatcatcaccatcactgccacaccatcatcaccaccacc
accaccaccaccaccactatcatcattatcatcaccaccaccaccatcataaccatcatc
actattaccaccaccacaatcaccatcatcaccatcactgccacaccatcatcaccacca
ccaccactaccatcacaatcattatcattatcctaa

>gi568815581r:56791703_57013988|GENSCAN_predicted_peptide_2|723_aa
MSDGIPAPYCVQKPNSAVASKYLPTQPHNNLAMPSAIIPQNPDFEQKPTAPAPSRYQVRT
AKVSIMFLMASVRLLSNLNRDKGALAQAESRRKPLSAAVRAGAVPVPLWIPCFFGGAEQR
CFRVRVLRVADVLQAAARVVAAQVSSLEKMEAERRPAPGSPSEGLFADGHLILWTLCSVL
LPVFITFWCSLQRSRRQLHRRDIFRKSKHGWRDTDLFSQPTYCCVCAQHILQGAFCDCCG
LRVDEGCLRKADKRFQCKEIMLKNDTKVLDAMPHHWIRGNVPLCSYCMVCKQQCGCQPKL
CDYRCIWCQKTVHDECMKNSLKNEKCDFGEFKNLIIPPSYLTSINQMRKDKKTDYEVVFD
VTKTPPIKALQLCTLLPYYSARVLVCGGDGTVGWVLDAVDDMKIKGQEKYIPQVAVLPLG
TGNDLSNTLGWGTGYAGEIPVAQVLRNVMEADGIKLDRWKVQVTNKGYYNLRKPKEFTMN
NYFSVGPDALMALNFHAHREKAPSLFSSRILNKLELDGERVALPSLEGIIVLNIGYWGGG
CRLWEGMGDETYPLARHDDGLLEVVGVYGSFHCAQIQVKLANPFRIGQAHTVRQTATSVQ
MTAKYSEKVTHPNSGVTNMRIPFSLQLELLHDDDEEERRGRGRGRGRRRRKKRKKKKKKK
NKKKKKKKKKKKKKKKKKKKEKEKKKKKKSGWILEGQNAKVKIAEILDLGEHSPLGETGQ
RMK

>gi568815581r:56791703_57013988|GENSCAN_predicted_CDS_2|2172_bp
atgtctgacgggatcccagctccctactgtgtacagaaacccaactctgctgtggcatcc
aagtaccttccaacccagcctcacaacaacctggcgatgccatctgccatcattccacaa
aacccagactttgagcagaaacctacagccccggcacctagcaggtaccaggtgaggaca
gccaaggtcagcatcatgttcctgatggccagtgtcaggcttctctccaacttaaacagg
gacaaaggagcattggcacaggcagaatcacgaaggaagccgctgagtgcagctgtgcgc
gccggggcggtgcctgtgcctctctggattccgtgtttcttcgggggtgctgagcagcgg
tgcttccgcgtccgcgttctccgggtagctgatgtgctgcaggctgcagcccgcgtggtc
gcggctcaggtatcgtccttggagaagatggaagcggagaggcggccggcgccgggctcg
ccctccgagggcctgtttgcggacgggcacctgatcttgtggacgctgtgctcggtcctg
ctgccggtgttcatcaccttctggtgtagcctccagcggtcgcgccggcagctgcaccgc
agggacatcttccgcaagagcaagcacgggtggcgcgacacggacctgttcagccagccc
acctactgctgcgtgtgcgcgcagcacattctgcagggcgccttctgcgactgctgcggg
ctccgcgtggacgagggctgcctcaggaaggccgacaagcgcttccagtgcaaggagatt
atgctcaagaatgacaccaaggtcctggacgccatgccccaccactggatccggggcaac
gtgcccctgtgcagttactgtatggtttgcaagcagcagtgtggctgtcaacccaagctt
tgcgattacaggtgcatttggtgccagaaaacagtacatgatgagtgcatgaaaaatagt
ttaaagaatgaaaaatgtgattttggagaattcaaaaacctaatcattccaccaagttat
ttaacatccattaatcagatgcgtaaagacaaaaaaacagattatgaagtggtttttgat
gtaactaaaactcctcctatcaaagccctacaactctgtactcttctcccatattattca
gctcgagtacttgtttgtggaggggatgggactgtagggtgggtcctggatgcagttgat
gacatgaagattaagggacaagaaaagtacattccacaagttgcagttttgcctctggga
acaggcaacgatctatccaatacattgggttggggtacaggttatgctggagaaattcca
gttgcgcaggttttgcgaaatgtaatggaagcagatggaattaaactagatcgatggaaa
gttcaagtaacaaataaaggatactacaacttaagaaaacccaaggaattcacaatgaac
aactatttttctgttggacctgatgctctcatggctctcaattttcatgctcatcgtgag
aaggcaccatctctgttttctagcagaattcttaataagctagaactggatggtgagcga
gtagcactgcccagcttggaaggtattatagttctgaacatcggatactggggcggtggc
tgcagactatgggaagggatgggggacgagacttaccctctagccaggcatgacgatggt
ctgctggaagtcgttggagtatatgggtctttccactgtgctcagattcaagtaaaactg
gctaatccttttcgaataggacaggcacatacagtgaggcagactgccacgtcggtccaa
atgacagccaagtactcagagaaggtgacccaccccaactcaggagtaaccaacatgcga
atcccattctctttgcagttggagctattacatgatgatgatgaagaagaaagaagagga
agaggaagaggaagaggaagaagaagaagaaagaagaggaagaagaagaagaagaagaag
aacaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaag
gagaaggagaagaagaagaaaaaaaaaagtgggtggattcttgaagggcaaaatgctaag
gtgaaaatagcagagatcctggaccttggagaacactcacctttaggggagactggacag
aggatgaaatga

>gi568815581r:56791703_57013988|GENSCAN_predicted_peptide_3|696_aa
MAELCPLAEELSCSICLEPFKEPVTTPCGHNFCGSCLNETWAVQGSPYLCPQCRAVYQAR
PQLHKNTVLCNVVEQFLQADLAREPPADVWTPPARASAPSPNAQVACDHCLKEAAVKTCL
VCMASFCQEHLQPHFDSPAFQDHPLQPPVRDLLRRKCSQHNRLREFFCPEHSECICHICL
VEHKTCSPASLSQASADLEATLRHKLTVMYSQINGASRALDDVRNRQQDVRMTANRKVEQ
LQQEYTEMKALLDASETTSTRKIKEEEKRVNSKFDTIYQILLKKKSEIQTLKEEIEQSLT
KRDEFEFLEKASKLRGISTKPVYIPEVELNHKLIKGIHQSTIDLKNELKQCIGRLQEPTP
SSGDPGEHDPASTHKSTRPVKKVSKEEKKSKKPPPVPALPSKLPTFGAPEQLVDLKQAGL
EAAAKATSSHPNSTSLKAKVLETFLAKSRPELLEYYIKVILDYNTAHNKVALSECYTVAS
VAEMPQNYRPHPQRFTYCSQVLGLHCYKKGIHYWEVELQKNNFCGVGICYGSMNRQGPES
RLGRNSASWCVEWFNTKISAWHNNVEKTLPSTKATRVGVLLNCDHGFVIFFAVADKVHLM
YKFRVDFTEALYPAFWVFSAGATLSICSPKNVKGHELIQDLLSSLHLDSSYPPDAGLSDD
DEPPNASLPPDPPLLTVPQMHSVCDQWLQDAFHISL

>gi568815581r:56791703_57013988|GENSCAN_predicted_CDS_3|2091_bp
atggcagagctgtgccccctggccgaggagctgtcgtgctccatctgcctggagcccttc
aaggagccggtcaccactccgtgcggccacaacttctgcgggtcgtgcctgaatgagacg
tgggcagtccagggctcgccatacctgtgcccgcagtgccgcgccgtctaccaggcgcga
ccgcagctgcacaagaacacggtgctgtgcaacgtggtggagcagttcctgcaggccgac
ctggcccgggagccacccgccgacgtctggacgccgcccgcccgcgcctctgcacccagc
ccgaatgcccaggtggcctgcgaccactgcctgaaggaggccgccgtgaagacgtgcttg
gtgtgcatggcctccttctgtcaggagcacctgcagccgcacttcgacagccccgccttc
caggaccacccgctgcagccgcccgttcgcgacctgttgcgccgcaaatgttcccagcac
aatcggctgcgggaatttttctgccccgagcacagcgagtgcatctgccacatctgcctg
gtggagcataagacctgctctcccgcgtccctgagccaggccagcgccgacctggaggcc
accctgaggcacaaactaactgtcatgtacagtcagatcaacggggcgtcgagagcactg
gatgatgtgagaaacaggcagcaggatgtgcggatgactgcaaacagaaaggtggagcag
ctacaacaagaatacacggaaatgaaggctctcttggacgcctcagagaccacctcgaca
aggaagataaaggaagaggagaagagggtcaacagcaagtttgacaccatttatcagatt
ctcctcaagaagaagagtgagatccagaccttgaaggaggagattgaacagagcctgacc
aagagggatgagttcgagtttctggagaaagcatcaaaactgcgaggaatctcaacaaag
ccagtctacatccccgaggtggaactgaaccacaagctgataaaaggcatccaccagagc
accatagacctcaaaaacgagctgaagcagtgcatcgggcggctccaggagcccaccccc
agttcaggtgaccctggagagcatgacccagcgtccacacacaaatccacacgccctgtg
aagaaggtctccaaagaggaaaagaaatccaagaaacctccccctgtccctgccttaccc
agcaagcttcccacgtttggagccccggaacagttagtggatttaaaacaagctggcttg
gaggctgcagccaaagccaccagctcacatccgaactcaacatctctcaaggccaaggtg
ctggagaccttcctggccaagtccagacctgagctcctggagtattacattaaagtcatc
ctggactacaacaccgcccacaacaaagtggctctgtcagagtgctatacagtagcttct
gtggctgagatgcctcagaactaccggccgcatccccagaggttcacatactgctctcag
gtgctgggcctgcactgctacaagaaggggatccactactgggaggtggagctgcagaag
aacaacttctgtggggtaggcatctgctacggaagcatgaaccggcagggcccagaaagc
aggctcggccgcaacagcgcctcctggtgcgtggagtggttcaacaccaagatctctgcc
tggcacaataacgtggagaaaaccctgccctccaccaaggccacgcgggtgggcgtgctt
ctcaactgtgaccacggctttgtcatcttcttcgctgttgccgacaaggtccacctgatg
tataagttcagggtggactttactgaggctttgtacccggctttctgggtattttctgct
ggtgccacactctccatctgctcccccaaaaatgtgaaaggtcatgagctcatccaggac
ttgctatcctccctgcatttagacagttcctacccacctgatgctggcctgtctgatgat
gatgagcctcccaatgccagcctgccccccgacccgccactcctcactgtgccccagatg
cacagtgtttgtgaccagtggctgcaggatgccttccacatcagcctctga

>gi568815581r:56791703_57013988|GENSCAN_predicted_peptide_4|468_aa
MAASETVRLRLQFDYPPPATPHCTAFWLLVDLNRCRVVTDLISLIRQRFGFSSGAFLGLY
LEGGLLPPAESARLVRDNDCLRVKLEERGVAENSVVISNGDINLSLRKAKKRAFQLEEGE
ETEPDCKYSKKHWKSRENNNNNEKVLDLEPKAVTDQTVSKKNKRKNKATCGTVGDDNEEA
KRKSPKKKEKCEYKKKAKNPKSPKVQAVKDWANQRCSSPKGSARNSLVKAKRKGSVSVCS
KESPSSSSESESCDESISDGPSKVTLEARNSSEKLPTELSKEEPSTKNTTADKLAIKLGF
SLTPSKGKTSGTTSSSSDSSAESDDQCLMSSSTPECAAGFLKTNPVETPKKDYSLLPLLA
AAPQVGEKIAFKLLELTSSYSPDVSDYKEGRILSHNPETQQVDIEILSSLPALREPGKFD
LVYHNENGAEVVEYAVTQESKITVFWKELIDPRLIIESPSNTSSTEPA

>gi568815581r:56791703_57013988|GENSCAN_predicted_CDS_4|1407_bp
atggcagcttccgagacggttaggctacggcttcaatttgattacccgccgccagctacc
ccgcactgtacggccttctggcttctggtcgacttgaacagatgccgagtcgtcacagat
ctcattagtctcatccgccagcgcttcggcttcagttctggggccttcctaggcctctac
ctggagggggggctcttgccccccgccgagagcgcgcgccttgtgagagacaacgactgc
ctcagagttaaattagaagagagaggagttgctgagaattctgtagtcatcagtaatggt
gacattaatttatctcttagaaaagcaaagaagcgggcatttcagttagaggagggtgaa
gaaactgaaccagattgcaaatattcaaagaagcattggaagagtcgagagaacaataac
aataatgagaaggtcttggatctggaaccaaaagctgtcacagatcagactgtcagcaaa
aaaaacaagagaaaaaataaagcaacctgtggcacagtgggtgatgataacgaagaggcc
aaaagaaaatcaccaaagaaaaaggagaaatgtgaatataaaaaaaaggctaagaatccc
aagtctccgaaagtacaggcagtgaaagactgggccaatcagagatgtagttctccaaaa
ggttctgctagaaacagccttgttaaagccaaaaggaaaggtagtgtaagcgtttgctca
aaagagagtcccagttcctcctcggagtctgaatcttgtgatgaatctatcagtgatggt
cccagcaaagtcactttggaggccagaaattcctcagagaaattaccaactgagttatca
aaggaagaaccctctaccaaaaatacaactgcagacaaactggctataaaacttggcttt
agccttacccccagcaagggcaagacctctggaacaacatcttccagttcagactctagt
gcagagtcagacgaccaatgcttgatgtcatcgagcaccccggagtgtgctgcgggtttc
ttaaagacaaatccagtagagacacccaagaaggactatagtctgttaccactgttagca
gctgcccctcaagttggagaaaagattgcatttaagcttttggagctaacatccagttac
tctcctgatgtctctgactacaaggaaggaagaatattaagccacaatccagagacccag
caagtagatatagaaattctttcatccttacctgccttgagagaacctgggaaatttgat
ttagtttatcacaatgaaaatggagccgaggtagtggagtacgctgtgacacaggagagc
aagatcactgtattttggaaagagttgattgacccaagactgattattgaatctccaagt
aacacatcaagtacagaacctgcctga

>gi568815581r:56791703_57013988|GENSCAN_predicted_peptide_5|416_aa
MELALRRSPVPRWLLLLPLLLGLNAGAVIDWPTEEGKEVWDYVTVRKDAYMFWWLYYATN
SCKNFSELPLVMWLQGGPGGSSTGFGNFEEIGPLDSDLKPRKTTWLQAASLLFVDNPVGT
GFSYVNGSGAYAKDLAMVASDMMVLLKTFFSCHKEFQTVPFYIFSESYGGKMAAGIGLEL
YKAIQRGTIKCNFAGVALGDSWISPVDSVLSWGPYLYSMSLLEDKGLAEVSKVAEQVLNA
VNKGLYREATELWGKAEMIIEQRHVRHLQRDALSQLMNGPIRKKLKIIPEDQSWGGQATN
VFVNMEEDFMKPVISIVDELLEAGINVTVYNGQLDLIVDTMGQEAWVRKLKWPELPKFSQ
LKWKALYSDPKSLETSAFVKSYKNLAFYWILKAGHMVPSDQGDMALKMMRLVTQQE

>gi568815581r:56791703_57013988|GENSCAN_predicted_CDS_5|1251_bp
atggagctggcactgcggcgctctcccgtcccgcggtggttgctgctgctgccgctgctg
ctgggcctgaacgcaggagctgtcattgactggcccacagaggagggcaaggaagtatgg
gattatgtgacggtccgcaaggatgcctacatgttctggtggctctattatgccaccaac
tcctgcaagaacttctcagaactgcccctggtcatgtggcttcagggcggtccaggcggt
tctagcactggatttggaaactttgaggaaattgggccccttgacagtgatctcaaacca
cggaaaaccacctggctccaggctgccagtctcctatttgtggataatcccgtgggcact
gggttcagttatgtgaatggtagtggtgcctatgccaaggacctggctatggtggcttca
gacatgatggttctcctgaagaccttcttcagttgccacaaagaattccagacagttcca
ttctacattttctcagagtcctatggaggaaaaatggcagctggcattggtctagagctt
tataaggccattcagcgagggaccatcaagtgcaactttgcgggggttgccttgggtgat
tcctggatctcccctgttgattcggtgctctcctggggaccttacctgtacagcatgtct
cttctcgaagacaaaggtctggcagaggtgtctaaggttgcagagcaagtactgaatgcc
gtaaataaggggctctacagagaggccacagagctgtgggggaaagcagaaatgatcatt
gaacagcgccacgtgagacacctacaacgagatgccttaagccagctcatgaatggcccc
atcagaaagaagctcaaaattattcctgaggatcaatcctggggaggccaggctaccaac
gtctttgtgaacatggaggaggacttcatgaagccagtcattagcattgtggacgagttg
ctggaggcagggatcaacgtgacggtgtataatggacagctggatctcatcgtagatacc
atgggtcaggaggcctgggtgcggaaactgaagtggccagaactgcctaaattcagtcag
ctgaagtggaaggccctgtacagtgaccctaaatctttggaaacatctgcttttgtcaag
tcctacaagaaccttgctttctactggattctgaaagctggtcatatggttccttctgac
caaggggacatggctctgaagatgatgagactggtgactcagcaagaatag