GENSCAN 1.0	Date run:  8-Nov-116	Time: 11:23:24

Sequence gi568815581r:54862736_55068646 : 205911 bp : 38.13% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Term +  13748  14394  647  0  2   14   33   258 0.056   6.20
 1.02 PlyA +  15767  15772    6                               1.05

 2.00 Prom +  23282  23321   40                              -2.25
 2.01 Init +  30586  30670   85  0  1   64   59    53 0.336   1.03
 2.02 Intr +  32294  32426  133  0  1   37   97    90 0.598   3.58
 2.03 Intr +  37989  38188  200  0  2   89   82   177 0.909  15.27
 2.04 Intr +  40192  40274   83  2  2   -4   99    61 0.488  -3.56
 2.05 Intr +  40945  41057  113  0  2   62   92    85 0.545   4.56
 2.06 Intr +  42754  42832   79  1  1   52   89    66 0.666   1.73
 2.07 Intr +  49931  50080  150  1  0   61  115    37 0.727   3.14
 2.08 Intr +  51013  51138  126  0  0   44   75   104 0.815   4.66
 2.09 Intr +  51904  52008  105  0  0   72   92    48 0.886   3.09
 2.10 Intr +  53011  53127  117  0  0   87   41   112 0.446   6.14
 2.11 Intr +  67338  67471  134  2  2   35   83   187 0.036  11.42
 2.12 Intr +  73914  73974   61  0  1   59  101    30 0.645  -0.78
 2.13 Term +  74374  74499  126  0  0  109   41    82 0.802   2.90
 2.14 PlyA +  76629  76634    6                               1.05

 3.00 Prom +  78226  78265   40                              -2.85
 3.01 Init +  86591  86617   27  1  0  114   99   -13 0.482   2.14
 3.02 Intr +  88482  88577   96  2  0   31   82    78 0.046   0.79
 3.03 Intr +  91655  91843  189  1  0   63   43   130 0.206   4.86
 3.04 Term +  95305  95451  147  0  0   14   55   128 0.277  -0.98
 3.05 PlyA +  97668  97673    6                               1.05

 4.07 PlyA -  98344  98339    6                               1.05
 4.06 Term - 100180  99998  183  1  0   68   45   129 0.996   3.16
 4.05 Intr - 100696 100571  126  1  0   59   88    74 0.955   4.46
 4.04 Intr - 102117 101962  156  0  0   80   92   118 0.999  10.69
 4.03 Intr - 105831 105546  286  2  1   51   91   232 0.374  16.22
 4.02 Intr - 106514 106393  122  2  2  108   22    60 0.323  -0.23
 4.01 Init - 113803 113756   48  1  0   85  119    17 0.345   5.50
 4.00 Prom - 114881 114842   40                              -4.05

 5.00 Prom + 115023 115062   40                              -4.35
 5.01 Init + 124338 124454  117  2  0   34   45    71 0.306  -2.35
 5.02 Intr + 128106 128222  117  2  0   76   93   143 0.866  13.34
 5.03 Intr + 138073 138148   76  0  1  108   99    19 0.189   3.17
 5.04 Term + 144771 144931  161  1  2   90   54    23 0.092  -3.78
 5.05 PlyA + 145065 145070    6                               1.05

 6.04 PlyA - 145619 145614    6                               1.05
 6.03 Term - 149854 149546  309  1  0  -27   55   249 0.207   4.18
 6.02 Intr - 150250 150019  232  0  1   26   49   124 0.243  -0.85
 6.01 Init - 151360 150447  914  1  2   64   52   341 0.507  21.71
 6.00 Prom - 159441 159402   40                              -6.65

 7.00 Prom + 160221 160260   40                              -6.05
 7.01 Init + 162054 162107   54  2  0   69   83    26 0.303   1.53
 7.02 Intr + 168433 168529   97  0  1   92   75    84 0.752   6.16
 7.03 Intr + 171433 171524   92  2  2   77   80    38 0.274   0.69
 7.04 Intr + 180501 180590   90  2  0   41   86    96 0.170   3.97
 7.05 Term + 198806 198919  114  1  0   87   41    37 0.014  -3.51
 7.06 PlyA + 199125 199130    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl -  65146  64847  300  1  0   82   42   215 0.952  11.84


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581r:54862736_55068646|GENSCAN_predicted_peptide_1|215_aa
XGDEKLVGYWSKGDSCYVLAKRLAAFCSCPRDLWNFELERDGLGYLAKKISEQQSIQEVT
WVLLKAFSFIKEAEHKSLGNLQPDNVIEKENPFSEEKLKPAAEICIRNKEPNVNLQHNGE
NVSRACQRASQQPLPSQAPRPRRKWFPGPGPGSPCCVQSMDLVHHIPATRAMTKRGQGTA
RAVASEGGSPKPWQLPCGVEPECEQKSQTGLGTST

>gi568815581r:54862736_55068646|GENSCAN_predicted_CDS_1|648_bp
ngtggagatgagaaacttgttgggtactggagcaaaggtgactcttgttatgttttagca
aagagactggcagcattttgctcctgccctagagatttgtggaactttgaactggagaga
gatggtttagggtatctagcgaaaaaaatttctgagcagcaaagcattcaagaggtgact
tgggtgctattaaaggcattcagttttataaaggaagcagaacataaaagtttgggaaat
ttacagcctgacaatgtgatagaaaaggaaaacccattttctgaggagaaattgaagcca
gctgcagaaatttgcatacgtaacaaggagccgaatgttaatctccaacacaatggggaa
aatgtctctagggcatgtcagagggcttcacagcagcccctcccatcacaggctccgagg
cctagaagaaaatggtttcctgggccagggccagggtctccttgctgtgtgcagtccatg
gacttggtgcaccacatcccagccactcgagccatgactaaaaggggccaaggtacagct
cgggctgttgcttcagagggtggaagccccaagccttggcagcttccatgtggtgttgag
cctgagtgtgaacagaagtcacaaacaggtttgggaacttccacctag

>gi568815581r:54862736_55068646|GENSCAN_predicted_peptide_2|503_aa
MQTNEEMRAFQIAVNAMKTITQNKRIKRDTLQDQPQILAGGDGRGWQCDAMEKGLSLEMR
KTQIHLHIQSDFSGSAERTASARAREALGRRGGAKGTERVESGAGERWRRISWARPSGAT
MAFGKSHRDPYATSVGHLIVRIVIQRQFEIIKAESKSVCNGSFYIVELRLNSFFLAEKAT
FAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNC
GPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGGVDVSEVKEVY
LDLVKKGVQFPPSEAEAETARQETAQISSNPPTSVPTAPALSSVIAPKNSTVTLVPEQIG
KLHSELDMVKMNVRVMSAILMENTPGSENHEDIELLQKLYKTGREMQERIMDLLVVVENE
DVTVELIQVNEDLNNAILGYERFTRNQQRILEQNKNQKEATNTTSEPSAPSQDLLDLSPS
PRMPRATLGELNTMNNQLSGLSK

>gi568815581r:54862736_55068646|GENSCAN_predicted_CDS_2|1512_bp
atgcaaacaaatgaagaaatgagagcatttcaaatagcagtaaatgctatgaagacaata
acccagaataagaggataaagagagatactctccaagatcagccacagatccttgctggt
ggggatggcaggggctggcagtgtgatgcaatggaaaaaggcttaagcttggaaatgaga
aaaacccaaattcacctccatattcagagtgactttagcggcagcgcagaacgcaccgcc
tctgccagagcccgggaagcgctcgggcgaagaggaggagccaagggtaccgagcgggtg
gagtcgggagccggagagcggtggaggcggatttcctgggcccggccctctggcgctacc
atggcgtttggcaagagtcaccgggatccctacgcgacctccgtgggccacctcatagtt
cggatagttatccagcgccagtttgaaataattaaggctgaaagtaaaagtgtatgcaat
ggaagtttttacatagttgagctcagactcaacagctttttcttggcagaaaaggctaca
tttgctggagttcagactgaagattggggccagttcatgcacatctgtgacataattaac
actacccaggatgggccaaaagatgcagtgaaagctttgaagaaaaggatttccaaaaac
tacaatcataaagaaatccaacttaccttgtcacttattgacatgtgtgtgcagaactgt
ggtccaagtttccagtctctgattgtgaagaaggaatttgttaaagagaatttagttaag
ctactgaatcccagatacaacttgccattagacattcagaatagaatcttgaatttcatt
aagacttggtcacagggcttcccaggaggtgtggatgtaagcgaagtcaaagaagtatac
ctcgacctggttaagaaaggcgttcagtttcctccctcagaagcagaggctgaaacagca
agacaagagactgctcaaatctcatcaaatcctccaacatctgtccctactgcaccagct
ctttcttctgtaattgctccaaagaactcgactgttacattggtcccagaacagattgga
aaactgcacagtgaattggatatggtgaaaatgaatgtgcgagtgatgtccgccatattg
atggagaatactcctgggtctgaaaaccatgaagacatagagcttctgcagaaactctat
aaaacaggtcgggagatgcaggagaggatcatggacctgcttgtggtggtggagaacgaa
gatgtaactgttgagctaattcaggtgaatgaggatttgaataatgctatccttggatat
gagaggtttactagaaaccaacaaaggattttggagcaaaataagaaccagaaggaagcc
accaatactaccagtgagccttctgccccatctcaagatctcctcgacctaagtcccagt
ccccggatgcctagggccactctgggagaactcaacaccatgaataatcaactttcaggc
ttaagtaaataa

>gi568815581r:54862736_55068646|GENSCAN_predicted_peptide_3|152_aa
MPSRKVVNLDIAKDADEEMHRARHAEKAMEFPCPPWSPTLQACSEWQQSPSRVICVPTMS
GAPWQRRVQQGPAIAIAGATAGSAEFGGPGKYRTGPCFSLEVQRLSEKFGNEYCRPKEQP
VQRPRGQSSGTFKEMEMLKPRVKKVNRELSTR

>gi568815581r:54862736_55068646|GENSCAN_predicted_CDS_3|459_bp
atgcccagcagaaaagtagtaaatctcgacattgcaaaggatgcagatgaagagatgcac
agggcgaggcatgcggaaaaggccatggagtttccgtgccctccctggagtcccaccctc
caggcatgctctgagtggcaacagtcaccctccagggttatatgcgttcccactatgagt
ggtgctccctggcaaagaagagtgcaacaggggcctgctattgccatagcaggagccaca
gctggctctgcagagtttggagggcctggcaaatacagaacgggcccttgcttttccctg
gaggtgcagaggttaagtgaaaagtttggaaatgagtattgtaggcccaaggaacaacct
gtacaaagacccagaggacagagctctggcacattcaaggaaatggaaatgctaaaacca
agagtaaagaaagttaacagggagctcagtaccagatga

>gi568815581r:54862736_55068646|GENSCAN_predicted_peptide_4|306_aa
MMAEGSGIILSRCNDLNKLQRDSLPPAPAVVLSTGQVVRGIRAGEADCPRAEKMQVSAAE
RVEPFLRPEWSGTGGAERGLRWLGTWKRCSLRARHPALQPPRRPKSSNPFTRAQEEERRR
QNKTTLTYVAAVAVGMLGASYAAVPLYRLYCQTTGLGGSAVAGHASDKIENMVPVKDRII
KISFNADVHASLQWNFRPQQTEIYVVPGETALAFYRAKNPTDKPVIGISTYNIVPFEAGQ
YFNKIQCFCFEEQRLNPQEEVDMPVFFYIDPEFAEDPRMIKVDLITLSYTFFEAKEGHKL
PVPGYN

>gi568815581r:54862736_55068646|GENSCAN_predicted_CDS_4|921_bp
atgatggctgaagggtctggtatcatattgtccagatgcaatgatctgaacaaacttcag
cgtgacagcctccctcctgctccagctgtggtgctttccactgggcaagttgtaaggggc
atcagagcaggggaagccgactgcccacgggctgagaaaatgcaggtgtcggctgcagag
agggtagagccgtttcttaggccagagtggagtgggacaggaggtgccgagagaggactg
aggtggcttgggacatggaagcgctgcagccttcgagcccggcatccagcattgcagccg
ccgcggcggcctaagagctcgaaccctttcacacgcgcgcaggaggaggagcggcggcgg
cagaacaagacgaccctcacttacgtggccgctgtcgccgtgggcatgctgggggcgtcc
tacgctgccgtacccctttatcggctctattgccagactactggacttggaggatcagca
gttgcaggtcatgcctcagacaagattgaaaacatggtgcctgttaaagatcgaatcatt
aaaattagctttaatgcagatgtgcatgcaagtctccagtggaactttagacctcagcaa
acagaaatatatgtggtgccaggagagactgcactggcgttttacagagctaagaatcct
actgacaaaccagtaattggaatttctacatacaatattgttccatttgaagctggacag
tatttcaataaaatacagtgcttctgttttgaagaacaaaggcttaatccccaagaggaa
gtagatatgccagtgtttttctacattgatcctgaatttgctgaagatccaagaatgatt
aaagttgatcttatcactctttcttacactttttttgaagcaaaggaagggcacaagttg
ccagttccaggatataattga

>gi568815581r:54862736_55068646|GENSCAN_predicted_peptide_5|156_aa
MKIQGVEIQTLLLVKGSSKVTLPRCMQTGMGGIGGHFANMITIAKETGLGLKVLGGINRN
EGPLVYIQEIIPGGDCYKIKTGYNKTVQIPITSENSTVGLSNTDVASAWTENYGLQEKIS
LNPSVRFKAEKLEMVKPLNFHFSSIRQKQERSILLL

>gi568815581r:54862736_55068646|GENSCAN_predicted_CDS_5|471_bp
atgaaaattcaaggagtggagatacagactttgcttttagtgaaaggaagcagtaaagtc
acattaccaagatgcatgcagacaggaatgggaggaattggtggccattttgcaaacatg
attacaattgccaaggaaacaggccttggcctgaaggtactaggaggaattaaccggaat
gaaggcccattggtatatattcaggaaattattcctggaggagactgttataagataaaa
actggatacaacaaaacagtacagattccaattacttcagaaaacagtactgtgggtttg
tctaatacagatgttgcttctgcctggactgaaaattatgggctacaagaaaagatctcc
ctaaatccctctgttcgctttaaggcagagaaactggaaatggtaaaacctttaaatttt
catttttcttccataagacaaaaacaggaaagaagtattctccttctttga

>gi568815581r:54862736_55068646|GENSCAN_predicted_peptide_6|484_aa
MQQPCNTPILGAQKPSGQWRLVQDLRIINEAVVPLYPAVPNPYTLLSQIPEEAEWFTVLD
LKDVFFCIPVHPDSQFLFAFEDPLNPMSQLTCTVLPQGFRDSPHLFGQALAQDLSQLSYL
DTLVLQYVDDLLLAACSETLCHQATQALLNFLATCGYKVSKEKAQLCSQQVKYLGLKLSK
GTKALSEECIQPILAYPHLKTLKQLREFLGITGFCRIWIPRYGKIARPLYTVIKETQKAN
THLVRWIPEAKVAFQALKKALTQVPVLSLPTGQDFSLYITEKNRNSSGSPYTGPRDKLAT
HGIPELYYLKGQCCNCALVQLLTQSHFFQTMKIEYNCQQIISQTYATRGDLLEVPLTDPD
LNLYTDGSSFVEKGPQKAGYAVAICREREFLTSEGTPITHQEAIRRLLLAVQKPKEVEVL
HCWGHQKGKKREIEGNCQADIEAKRAARQDPPLEMLIEGTLLWGNALRETKPQYSEEEIE
WGTS

>gi568815581r:54862736_55068646|GENSCAN_predicted_CDS_6|1455_bp
atgcaacagccctgcaatactccaattttaggagcacagaaacccagtggacagtggagg
ttagtgcaagatctcaggattatcaatgaggccgttgtccctctatacccagctgtacct
aacccttatactctgctttcccaaataccagaggaagcagagtggtttacagtcctggac
cttaaggatgtctttttctgcatccctgtacatcctgactctcaattcttgtttgccttt
gaagatcctttgaacccaatgtctcaactcacctgcactgttttaccccaagggttcagg
gatagcccccatctatttggccaggcattagcccaagacttgagtcagttatcatacctg
gacactcttgtccttcagtatgtggatgatttacttttagctgcctgttcagaaaccttg
tgccatcaagccacccaagcactcttaaatttcctcgccacctgtggctacaaggtttcc
aaagagaaggctcagctctgctcacagcaggttaaatacttaggactaaaattatccaaa
ggcaccaaggccctcagtgaggaatgtatccagcctatactggcttatcctcatctcaaa
accctaaagcaactaagagagttccttggcataacaggcttctgccgaatatggattccc
aggtatggcaaaatagccaggccattatatacagtaattaaggaaactcagaaagccaat
acccatttagtaagatggatacctgaagcaaaagtggctttccaggccctaaagaaggcc
ttaacccaagtcccagtgttaagcttgccaacggggcaagacttttctttatacatcaca
gaaaaaaacagaaacagctctgggagtccttacacaggtccaagggacaagcttgcaacc
catggcatacctgagctctattacttgaaaggccagtgctgcaactgtgcacttgtgcaa
ctcttaacccagtcacatttcttccagacaatgaagatagaatataactgtcaacaaata
atttctcaaacctatgccactcgaggggaccttctagaggttcccttgactgatcctgac
ctcaacttgtatactgatggaagttcctttgtagaaaaaggacctcaaaaagcggggtat
gcagtggcaatatgcagagaaagggaattcctaacttccgagggaacacctatcacacat
caggaagccattaggagattattactggcagtacagaaacctaaagaggtggaagtctta
cactgctggggtcatcagaaaggaaagaaaagggaaatagaagggaactgccaagcagat
attgaagcaaaaagagctgcaaggcaggaccctccattagaaatgcttatagaaggaacc
ctactatggggtaatgccctccgggaaacaaagccccagtactcagaagaagaaatagaa
tggggaacctcatga

>gi568815581r:54862736_55068646|GENSCAN_predicted_peptide_7|148_aa
MKEQEPPASAQISQCHVLALNYLGIQPTKEQHQALRQQVQADSKGTVSFGDFVQVARNLF
CLQLDEVNVGAHEISNILDSQLLPCDSSEADEMERLKCERDDALKEVNTLKIVTVASECQ
LLFSTKNPLYSDPSCYSFIATATSYLLP

>gi568815581r:54862736_55068646|GENSCAN_predicted_CDS_7|447_bp
atgaaggaacaagagcctcctgcatcagcccaaatttcacaatgtcatgttttagctcta
aattatcttggtattcagcccacaaaggaacaacaccaagccctgagacagcaagtacaa
gcagactcaaaagggacagtgtcttttggagattttgtccaggttgccagaaacttgttt
tgcttgcagttggatgaagtaaatgttggtgcacatgaaatttccaatatattagattca
cagcttcttccttgtgattcttcagaagcagatgaaatggaaaggctcaagtgtgaaaga
gatgatgccttgaaagaagtaaatacacttaagatagtcactgtggcctcagaatgccag
cttttattttctaccaaaaaccctctttactcagatccctcatgctattcttttattgcc
acagccacatcctacctgctcccctaa