GENSCAN 1.0	Date run:  8-Nov-116	Time: 15:25:43

Sequence gi568815581f:1170564_1371268 : 200705 bp : 51.11% C+G : Isochore 3 (51 - 57 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   2303   2379   77  1  2   78   89    44 0.224   4.01
 1.02 Intr +   3987   4169  183  0  0   87   95    32 0.333   3.22
 1.03 Intr +   7382   7539  158  2  2  110   16    74 0.386   2.57
 1.04 Intr +   8890   9181  292  2  1   76   49   136 0.647   5.24
 1.05 Intr +  11704  11748   45  1  0  127  110    29 0.720   7.01
 1.06 Intr +  18459  18580  122  0  2   74   76    36 0.066   1.64
 1.07 Intr +  21340  21469  130  2  1  107   95    67 0.991   9.56
 1.08 Intr +  22730  22922  193  2  1   35   75   139 0.817   7.32
 1.09 Term +  27629  27871  243  1  0   71   37   122 0.769   1.63
 1.10 PlyA +  29272  29277    6                               1.05

 2.05 PlyA -  29376  29371    6                               1.05
 2.04 Term -  30688  30587  102  1  0   89   44    73 0.100   1.58
 2.03 Intr -  46335  46219  117  0  0   65   47   112 0.433   5.97
 2.02 Intr -  58212  58097  116  1  2   48   84    11 0.201  -2.63
 2.01 Init -  59067  58230  838  0  1   57   80  1300 0.979 119.09
 2.00 Prom -  63105  63066   40                              -3.01

 3.00 Prom +  66325  66364   40                              -2.91
 3.01 Sngl +  79422  79856  435  2  0   55   42   222 0.608  10.93
 3.02 PlyA +  82494  82499    6                               1.05

 4.00 Prom +  89228  89267   40                              -4.61
 4.01 Init + 100001 100565  565  1  1   69   15   666 0.924  50.67
 4.02 Term + 100738 100949  212  2  2   45   50   174 0.939   7.08
 4.03 PlyA + 101235 101240    6                               1.05

 5.00 Prom + 102576 102615   40                              -5.41
 5.01 Init + 109439 109825  387  1  0   96  115   440 0.989  44.33
 5.02 Term + 110256 110330   75  2  0   70   55     0 0.292  -6.96
 5.03 PlyA + 113252 113257    6                               1.05

 6.04 PlyA - 114116 114111    6                               1.05
 6.03 Term - 116340 116222  119  1  2   26   48   158 0.587   4.61
 6.02 Intr - 117870 117727  144  1  0  -58   56   184 0.424   1.36
 6.01 Init - 118154 117872  283  2  1   64    3   371 0.310  23.40
 6.00 Prom - 120870 120831   40                              -7.00

 7.03 PlyA - 121040 121035    6                               1.05
 7.02 Term - 123191 122867  325  1  1   47   44   469 0.541  32.99
 7.01 Init - 123775 123735   41  1  2   70   97   -21 0.491  -3.39
 7.00 Prom - 124308 124269   40                              -6.70

 8.00 Prom + 124425 124464   40                              -8.19
 8.01 Init + 124871 125060  190  1  1   60   94   336 0.387  28.55
 8.02 Intr + 134217 134489  273  1  0   77   65   149 0.683   9.55
 8.03 Intr + 157249 157340   92  2  2   93   56    38 0.405   1.31
 8.04 Term + 158370 158948  579  2  0   18   49   385 0.772  22.50
 8.05 PlyA + 159604 159609    6                              -3.94

 9.03 PlyA - 159750 159745    6                               1.05
 9.02 Term - 161321 161217  105  2  0   85   50    68 0.893   1.41
 9.01 Init - 164323 164267   57  1  0  110   92    54 0.961   9.26
 9.00 Prom - 169211 169172   40                              -2.31

10.06 PlyA - 173093 173088    6                               1.05
10.05 Term - 174936 174884   53  1  2  118   53    98 0.787   7.18
10.04 Intr - 183784 183648  137  0  2   57  115   143 0.998  14.62
10.03 Intr - 190735 190529  207  0  0   75  111   147 0.997  14.42
10.02 Intr - 191445 191339  107  0  2   97   51    30 0.990  -0.29
10.01 Intr - 194495 194296  200  0  2   91   81   182 0.214  17.39

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  27379  27450   72  0  0   70   40   160 0.873   8.47
S.002 Term +  37818  37970  153  2  0   87   39    94 0.829   2.63
S.003 Sngl -  98096  97827  270  2  0   60   46   192 0.831   5.95


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581f:1170564_1371268|GENSCAN_predicted_peptide_1|480_aa
MGELQNSPPGTNSHLEKSAKNIEQSRWGTESIKGMKISQENEIALGNVAWGKRSELQKAG
SSNNRWSRSAFHDGQATAGSCLAQQGRGRSRWSGGTWHRTYAQGIRLCPFDVEKPKQNEP
SQGQLLGGGEEGTWMEEEADQPGSWVPTPIPIPNPTPIRTPISPPPALPGPARCLGPDPD
LGVPIPILGSRSPSWGPDPDPGVPPPPGTRTAVEGVDPGQARQAPVAERLHPAAAARSEN
RGPEQLSNPLRGSWHLVLSWSAQSHEHTVRCQELARETSTHDSCSPERRVKKGGKERSTE
HSLNPAAGSATNLLCDSEELPFPVCPLMFSPRHEEMIQDSPALPASLLNALRPTCPEHRQ
YLRSRHPVKHVTFTLRKQPLYVEATVTTPALQKRLKFTLLRPHMRLYMQAGHISFQAHKQ
PRLPAKTTNPNVGTRGTLPKAELLLIFSVTFRTKKEEVLSGQGELGLRHQQTATSHLASA

>gi568815581f:1170564_1371268|GENSCAN_predicted_CDS_1|1443_bp
atgggtgagctgcagaactctccccctggtacaaacagtcacttggagaaaagtgccaag
aatatagaacagagcagatggggcactgaatctataaagggcatgaaaatatcacaagag
aatgaaatcgcccttggaaatgttgcttggggtaagagaagtgagctccaaaaagcaggc
tctagtaacaacagatggtcacgttctgccttccatgacggccaagccactgcaggctct
tgcttggctcagcagggaaggggaaggagcagatggagcggcggcacctggcacaggacc
tatgcccaggggatccggctttgcccctttgatgttgagaaaccaaagcagaatgaacca
tcacaaggacagctcctggggggaggagaggaaggaacatggatggaggaggaggcggac
cagcccggctcctgggtcccgaccccgatcccgattcccaacccgaccccgatccggacc
ccgatctcgcccccgcccgcgctccccggaccagcccggtgcctgggtcccgatcccgat
cttggggtcccgatcccgatcctggggtcccgatctccatcctggggtcccgatcccgat
cctggggtcccgcccccgcccggcacacgtactgctgtagagggtgtcgatccaggacag
gcgcggcaggccccggtggctgagcggctccatcccgcggcggcggctcggtcagaaaac
cgaggccctgagcagctgagtaacccactcagaggctcttggcaccttgtcctgagctgg
tcagctcagtctcatgaacacacagtccggtgccaggagctggcacgagaaactagcaca
catgactcgtgttctcccgaaaggagagtgaagaagggagggaaagagcgctcgaccgag
cacagcctgaatccagctgctggttctgccactaacttgctgtgtgactctgaagaactg
cctttccctgtctgtcccttgatgttctcacctcgacacgaagagatgattcaggactcc
cccgctctcccggcgagtttgctgaacgcccttcggccgacgtgtcccgagcatcgccag
tatttacgttctaggcaccctgttaagcacgtaaccttcactcttcgcaagcagcctctc
tatgtggaagccacagtcaccacgcccgctttacagaagaggctcaagttcacactgcta
aggccacacatgaggctgtacatgcaggcaggccacatttccttccaggcccacaaacaa
cctcgacttcctgcaaagaccactaaccccaacgtcggtacacgtggcacgttgcccaag
gccgagctgctgctgatttttagtgtgactttcaggaccaaaaaggaagaggttctgtct
ggacaaggagagcttggcctgagacaccaacagacggcaacttcccacctggcctctgcc
tga

>gi568815581f:1170564_1371268|GENSCAN_predicted_peptide_2|390_aa
MWDPRAFERRWRAEFPGAEAPVPRLESVRDAERELERRRLNLERLQQVLAEEQLKASLPQ
AALARGGGGDSGEPGRPDPEAESPRGDPGRPDPEAESPRGDLPAGPGAAGEAGGGRSWAD
AVHRQLLQPQLRFRAREDDAPLGDPQAAPGTDEGGDGGDHDFEMVDFNEKFILSHWLVAP
CRFGTRERARSPRRWMHLIPGGRRPQRGTRDLEQREAEAKGRPGSPLAAEETPGREHLPP
WRRRRFLRVPERDSPGHSSPERDSDGSRHSSDREDDFSADPARPRRAPPTPGCRDPFPAD
SAALFNLELGAGERAGRRRAQSGFLNAELVGNLCGLAVSTQKLIIHINGLKELLFTENPH
PDLKHCALHPEQQPRGHRPREAIADVNSLE

>gi568815581f:1170564_1371268|GENSCAN_predicted_CDS_2|1173_bp
atgtgggacccccgcgcgttcgagcggcgctggcgggccgagttccccggggcggaggcg
ccggtcccgaggctggagtcggtgcgggacgcggagcgggagctggagcgccgcagactc
aacctggagcggctgcaacaggtgctggcggaggagcagctcaaagcctcgctcccgcag
gccgcgctggcccggggcggcggcggagactccggggagcccgggcgccccgaccccgag
gccgagtctccccgcggggaccccgggcgccccgaccccgaggccgagtctccccgcggg
gacctgcccgccgggcccggggcggccggagaagccggcgggggaaggagctgggccgac
gccgtccaccggcagctcctgcagccccagctgcggttccgggcccgggaggacgacgcg
cccctcggggacccccaggcggctcccggcacggacgaggggggcgacggcggcgaccac
gacttcgagatggtggatttcaacgagaagttcatcctcagccactggctggtggcccct
tgccggttcgggacccgcgagcgggcgcgcagcccccgccgctggatgcacctgatcccc
ggggggcggcggccgcagcgggggacccgcgacctggagcagcgggaggccgaggccaag
ggccgcccgggctcgcccctcgccgcggaggagacccccgggcgcgagcacctgcccccg
tggcggcgccgcaggttcctgcgggtgcccgagcgggactcgcccggccacagctcgccg
gagagagacagcgacggcagccggcacagctccgaccgcgaggacgacttctccgcagac
cccgctcgaccccgccgcgcgccccccaccccgggctgccgggaccccttcccggccgac
tccgcggccctgtttaacctcgagctcggggccggggagcgggcgggaaggaggagggca
cagagtggcttcctgaatgccgagcttgttggtaacctttgtgggctggcagtgagcacg
cagaaattaattattcatatcaatgggctgaaggagctgttgttcactgagaacccacat
cctgacctaaagcattgtgctttgcatccggagcagcagcctcgtggacaccggccccgt
gaagctattgctgatgtgaacagtcttgagtga

>gi568815581f:1170564_1371268|GENSCAN_predicted_peptide_3|144_aa
MGTLAGDCGGKIMGTLAGDCGGKIMGTLAGGCGGKIMGTLAGGCGGKIMGTLAGGCGGKI
MGTLAGGCGGKIMGTLAGGCGGKIMGTLAGGCGGKIMGTLAGCCGGKIMGTLAGGCGGEE
KSRERQTEFHSLQCTQLPLQQLCA

>gi568815581f:1170564_1371268|GENSCAN_predicted_CDS_3|435_bp
atggggacccttgctggggactgtggagggaagatcatggggacccttgctggggactgt
ggagggaagatcatggggacccttgctgggggctgtggagggaagatcatggggaccctt
gctgggggctgtggagggaagatcatggggacccttgctgggggctgtggagggaagatc
atggggacccttgctgggggctgtggagggaagatcatggggacccttgctgggggctgt
ggagggaagatcatggggacccttgctgggggctgtggagggaagatcatggggaccctt
gctgggtgctgtggagggaagatcatggggacccttgctgggggctgtggaggggaagaa
aagtcacgtgaacgacagacggaattccattccctccagtgcacacagctgccgctgcag
caattatgtgcttaa

>gi568815581f:1170564_1371268|GENSCAN_predicted_peptide_4|258_aa
MLRGAPGLGLTARKGAEDSAEDLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRARP
VRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLV
LRASPAPRGPCGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSAPRCASCP
PHAPLARPRRPGWQLDYKTRDCKGVLDRAELDRLRPGVEEKELAREKELRDPGLRPHIPA
WGREKELRGLGLRPHIPA

>gi568815581f:1170564_1371268|GENSCAN_predicted_CDS_4|777_bp
atgctgcggggcgcgccaggactaggcctcacggcgcggaagggggccgaggactctgcg
gaggacttggggggcccctgccccgagcccgggggcgattcgggggtgctgggggcgaac
ggcgcttcctgcagccggggcgaggcggaggagccggcgggcaggaggcgcgcgcggccg
gtgcggtccaaggcgcggcgcatggccgccaacgtgcgggagcgcaagcgcatcctagac
tacaacgaggccttcaacgcgctgcgccgggcgctgcggcacgacctgggcggcaagagg
ctctccaagatcgccacgctgcgcagggccatccaccgcatcgccgcgctctccctggtc
ctgcgcgccagccccgcgccccgcgggccctgcggacacctggagtgccacggcccggcc
gcgcgcggggacaccggggacacaggcgccagccccccgccgcctgcagggcccagcctc
gcgcgcccagacgccgcccgcccctcggtgccgtccgcgccccgctgcgcctcgtgcccc
ccgcacgcgcccctggcacggcccaggaggccgggctggcagctggactataaaacccgg
gactgcaaaggcgtcttggacagagcagaactggaccggctgagacctggcgtggaagag
aaggagctcgccagagagaaggagctccgggacccggggttgcgcccccacatcccagcc
tggggcagagagaaggagctccggggcctggggctgcgcccccacatcccagcctag

>gi568815581f:1170564_1371268|GENSCAN_predicted_peptide_5|153_aa
MAHPVQSEFPSAQEPGSAAFLDLPEMEILLTKAENKDDKTLNLSKTLSGPLDLEQNSQGL
PFKAISEGHLEAPLPRSPSRASSRRASSIATTSYAQDQEAPRDYLILAVVACFCPVWPLN
LIPLIISIMATWTCSQPLPAPVSKSRSGFPAVP

>gi568815581f:1170564_1371268|GENSCAN_predicted_CDS_5|462_bp
atggcccacccggtgcagtccgagtttccttcagcacaggagccaggctccgccgcattc
ctggacctgccggagatggagatactcctcaccaaggcagagaacaaggatgacaagacc
ctgaatctgtccaagaccctctcggggcctctggatctggagcagaacagccagggccta
cccttcaaggccatctccgaggggcacctggaggccccactgcctcggtccccctcccgg
gccagctcaaggagggcgtcctccatcgccaccacctcctatgcccaagaccaagaagcc
cccagagattacctcatcctggccgtcgtcgcctgcttctgccccgtctggcccctcaac
ctcatccccctcatcatttccatcatggccacctggacatgctcccagcctctgccggct
ccggtttccaagagtcgcagcggcttccctgccgtaccctga

>gi568815581f:1170564_1371268|GENSCAN_predicted_peptide_6|181_aa
MGNPVGDEEPVGGGEPVGDEKLEGDGEPMGDGEPVGDEKLEGDEEPMGDGEPIGDGEPVG
DEKLEGDGEPVGDGKPMGDGEPVGDEEPVGDGEPMGDEEPVGVGEPVGDEEPMGDGEPMG
DGEPVGDEEPVGDGEPVGDGEPAGANHTRLANNNTPQADNNTPQADNNTPQADNTPRADN
T

>gi568815581f:1170564_1371268|GENSCAN_predicted_CDS_6|546_bp
atggggaacccggtgggggatgaggagcccgtggggggtggggaacccgtgggggatgag
aagctggagggggatggggaacccatgggggatggggaacccgtgggggatgagaagctg
gagggggacgaggagcccatgggggatggggaacccattggggatggggaacccgtgggg
gatgagaagctggagggggatggggagcccgtgggggatgggaaacccatgggggatggg
gaacccgtgggggatgaggaacccgtgggggatggggaacccatgggggatgaggaacct
gtgggggttggggaacctgtgggggatgaggagcccatgggggatggggagcccatgggg
gatggggaacccgtgggggatgaggagcccgtgggggatggggaacccgtgggggatggg
gaacccgctggagcaaatcacacccggctggccaataacaacactccacaggccgacaac
aacaccccacaggccgacaacaacaccccacaggccgacaacaccccacgggctgataac
acctga

>gi568815581f:1170564_1371268|GENSCAN_predicted_peptide_7|121_aa
MWLHGGLVLCITPRSVWDSVTSSNSTCDIIKLNPQHQTQLMTSSNPAHDIIKPNLRHHQT
QPTTSSNSTHDIIKPNPRHHQTQLVTSSNPTCDIIKHNPRHHQTQPTTSSNPTHDIIKLN
S

>gi568815581f:1170564_1371268|GENSCAN_predicted_CDS_7|366_bp
atgtggcttcacgggggccttgttttatgtatcactcctcgctccgtctgggacagcgtg
acatcatcaaattcaacctgtgacatcatcaaactcaacccacaacatcaaactcaactc
atgacatcatcaaacccagcccatgacatcatcaaacccaacctgcgacatcatcaaaca
caacccacgacatcatcaaactcaacccacgacatcatcaaacccaacccacgacatcat
caaactcaactcgtgacatcatcaaacccaacctgcgacatcatcaagcacaacccacga
catcatcaaactcaacccacgacatcatcaaacccaacccacgacatcatcaaactcaac
tcgtga

>gi568815581f:1170564_1371268|GENSCAN_predicted_peptide_8|377_aa
MKLTHSLPGSRGLSVLSPQSRSSMQQGNVDGARRLGRLARLLSITLIIMGIVIIMVAVTV
NFTGIPAPGVGPGSYAAFVLTAKWALLYRQKHENCKRLPFLGCLRLDAQPGVLRVVGFQR
SWALPEQGTVCEAVLGRPARYALLGSFPGGGSTAGGDGVSICKPGPSADAGSACTFTSDF
PASRTRNTGRTLTQYPTETTGRTLTQYPTGTTGRTLARYPTETAGRTLTQYPTETMGRTL
TQYSRGPTGRTLTQYPTETTGRTLTKYTTETAGRTLTQYLRGPTGRTLSQYPTETARRTL
TRYSTEIARRTLTQYPTETTGRTLTQYPTETAGRTLTQYPTVLRKRVSPRSCRGARSGSM
GSAGGDSGPPLKMGFGS

>gi568815581f:1170564_1371268|GENSCAN_predicted_CDS_8|1134_bp
atgaagctgacccacagccttcccggttcccggggtctctctgtgctctctccgcagtct
cgaagcagcatgcaacagggcaacgtggacggcgcccggaggctgggccgcctggctcgg
ctgctcagcattaccctcatcatcatgggcatcgtcattatcatggtggccgtgaccgtc
aacttcacaggaattcctgctcccggagttggcccaggttcatatgctgcctttgtgctg
actgcaaagtgggccctcctatacagacaaaaacatgaaaactgcaaacgcctccccttc
ctgggatgtttgcggctggacgcccagcctggtgtgctgagggtagttggatttcagagg
tcctgggcactgcctgagcagggcacagtctgcgaggccgtcctgggcagacctgcccgc
tacgccttgttggggtcctttcccggaggtggcagcacagccggtggggacggagtgtcc
atctgcaaaccaggaccctcggccgacgctgggtctgcctgcaccttcacctcagacttc
ccagcctccagaacgagaaacactggaaggactctgacccagtaccccacagagaccact
ggaaggactctgacccagtaccccacagggaccactggaaggactctggcccggtacccc
acagagactgctggaaggactctgacccagtaccccacagaaaccatgggaaggactctg
acccagtactccagagggcccactggaaggactctgacccagtacccgacagagaccact
ggaaggaccctgaccaagtacaccacagagactgctggaaggactctgacccagtacctc
agagggcccactggaaggactctaagccagtaccccacagagaccgctagaaggactctg
actcggtactccacagagattgctagaaggactctgacccagtaccccacagagaccact
ggaaggactctgacccagtaccccacagagacagctggaaggactctgacccagtacccc
acagttctaaggaagagggttagtccacggagctgcagaggtgcccgctccggctctatg
gggtcagcaggaggtgactcaggaccacctctgaagatgggctttgggtcctga

>gi568815581f:1170564_1371268|GENSCAN_predicted_peptide_9|53_aa
MAPYEFLISVLEGIKADTQSCLLIFLSSLQLVITLFKDTVQLPVVCDRVWWYP

>gi568815581f:1170564_1371268|GENSCAN_predicted_CDS_9|162_bp
atggccccatacgagtttctaatctcggtgctcgagggaattaaggcagatactcagagc
tgcctccttatcttcctcagcagcttacaacttgtcatcactctcttcaaggacacggtg
cagctccctgttgtttgtgaccgtgtgtggtggtacccatga

>gi568815581f:1170564_1371268|GENSCAN_predicted_peptide_10|234_aa
XMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKM
IREYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDR
KEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD
AIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGEEQNKEALQDVEDENQ

>gi568815581f:1170564_1371268|GENSCAN_predicted_CDS_10|705_bp
naaatggtggagtcaatgaagaaagtagcagggatggatgtggagctgacagttgaagaa
agaaacctcctatctgttgcatataagaatgtgattggagctagaagagcctcctggaga
ataatcagcagcattgaacagaaagaagaaaacaagggaggagaagacaagctaaaaatg
attcgggaatatcggcaaatggttgagactgagctaaagttaatctgttgtgacattctg
gatgtactggacaaacacctcattccagcagctaacactggcgagtccaaggttttctat
tataaaatgaaaggggactaccacaggtatctggcagaatttgccacaggaaacgacagg
aaggaggctgcggagaacagcctagtggcttataaagctgctagtgatattgcaatgaca
gaacttccaccaacgcatcctattcgcttaggtcttgctctcaatttttccgtattctac
tacgaaattcttaattcccctgaccgtgcctgcaggttggcaaaagcagcttttgatgat
gcaattgcagaactggatacgctgagtgaagaaagctataaggactctacacttatcatg
cagttgttacgtgataatctgacactatggacttcagacatgcagggtgacggtgaagag
cagaataaagaagcgctgcaggacgtggaagacgaaaatcagtga