GENSCAN 1.0	Date run:  5-Nov-116	Time: 05:11:48

Sequence gi568815580r:63231785_63467118 : 235334 bp : 41.78% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   1860   1993  134  2  2   72   91    70 0.048   5.63
 1.02 Intr +   6449   6520   72  2  0   62   72    92 0.027   2.60
 1.03 Intr +   7111   7217  107  1  2   25   53    96 0.013  -1.26
 1.04 Intr +  18098  18261  164  0  2   56   72   101 0.248   4.07
 1.05 Intr +  23598  23717  120  2  0   63   37   106 0.016   2.77
 1.06 Intr +  27475  27666  192  0  0  -33   94   165 0.004   3.77
 1.07 Term +  33069  33518  450  2  0   61   42   210 0.250   7.90
 1.08 PlyA +  33863  33868    6                               1.05

 2.09 PlyA -  34129  34124    6                               1.05
 2.08 Term -  37060  37014   47  2  2  120   47    37 0.427  -0.81
 2.07 Intr -  38468  38432   37  2  1   82  106    51 0.548   3.22
 2.06 Intr -  53509  53315  195  1  0   95   99    71 0.423   7.59
 2.05 Intr -  59366  59238  129  2  0   64   97    38 0.301   2.27
 2.04 Intr -  60944  60723  222  2  0   87   88   163 0.427  13.60
 2.03 Intr -  77653  77557   97  0  1   55   74    37 0.072  -1.91
 2.02 Intr -  85950  85746  205  1  1   27  101   160 0.350   8.54
 2.01 Init -  86882  86294  589  2  1   92   23   571 0.284  46.43
 2.00 Prom -  97015  96976   40                              -4.55

 3.11 PlyA -  97869  97864    6                               1.05
 3.10 Term - 100117  99998  120  1  0  119   33   190 0.998  14.09
 3.09 Intr - 103574 103473  102  2  0  117  115     6 0.974   5.65
 3.08 Intr - 107099 107016   84  2  0   72   92    91 0.979   7.00
 3.07 Intr - 112709 112626   84  2  0   36   86    77 0.133   1.40
 3.06 Intr - 119295 119104  192  0  0  122   83    48 0.683   6.47
 3.05 Intr - 123515 123420   96  2  0   93  100    84 0.937   9.39
 3.04 Intr - 123779 123714   66  2  0  125   71    13 0.728   1.48
 3.03 Intr - 128008 127952   57  1  0   96   99    58 0.978   5.86
 3.02 Intr - 131084 130995   90  2  0   44   94    79 0.332   3.37
 3.01 Init - 135334 135227  108  1  0   80   89   219 0.997  19.72
 3.00 Prom - 142987 142948   40                              -7.35

 4.00 Prom + 144329 144368   40                              -4.85
 4.01 Init + 144586 144680   95  0  2   70   34    99 0.536   2.60
 4.02 Term + 151006 151453  448  1  1   26   38   217 0.164   4.20
 4.03 PlyA + 153086 153091    6                               1.05

 5.10 PlyA - 153221 153216    6                               1.05
 5.09 Term - 161765 161619  147  2  0   61   44   175 0.855   7.32
 5.08 Intr - 165469 165250  220  0  1   72  115   170 0.979  15.48
 5.07 Intr - 167539 167458   82  2  1   76   97    72 0.947   4.68
 5.06 Intr - 172042 171923  120  2  0   84   61   107 0.952   7.15
 5.05 Intr - 175715 175648   68  1  2   56    4    77 0.320  -6.27
 5.04 Intr - 178662 178506  157  1  1   69   71   128 0.759   7.35
 5.03 Intr - 179794 179683  112  1  1   75   54   111 0.873   5.43
 5.02 Intr - 183946 183832  115  0  1   36   23   170 0.527   4.83
 5.01 Init - 184237 184122  116  1  2   45   21   124 0.347   1.13
 5.00 Prom - 188821 188782   40                              -6.55

 6.00 Prom + 189474 189513   40                              -9.55
 6.01 Init + 190442 190552  111  1  0   45   44    96 0.762   1.18
 6.02 Intr + 191042 191187  146  1  2  102   77   100 0.876   8.46
 6.03 Term + 192011 192119  109  2  1  111   45    65 0.887   1.50
 6.04 PlyA + 193197 193202    6                               1.05

 7.07 PlyA - 193357 193352    6                               1.05
 7.06 Term - 199746 199640  107  1  2   73   48   107 0.960   2.79
 7.05 Intr - 203964 203796  169  0  1  -81   87   203 0.044   1.90
 7.04 Intr - 208771 208421  351  1  0   56   13   184 0.006   2.29
 7.03 Intr - 214798 214627  172  0  1   43  100   108 0.273   6.52
 7.02 Intr - 224701 224540  162  0  0   38   60   134 0.407   3.77
 7.01 Intr - 232066 231908  159  0  0   24   62   126 0.181   1.78

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -   2850   2726  125  1  2   75   44    92 0.902   1.07
S.002 Init -   5146   4888  259  1  1   59   75   167 0.891   9.85
S.003 Intr - 203966 203796  171  0  0  -41   87   202 0.908   6.19
S.004 Intr - 208771 208465  307  1  1   56   52   170 0.909   5.30


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815580r:63231785_63467118|GENSCAN_predicted_peptide_1|412_aa
MLALLQLTFCGAARFLTGHGPVPVHGLGAGDPWLMTHNHIAKCNRRLSDDLAKACERHPR
NAVMWAETETRKRWETGWHVLLGNERAEPLESCGMANCGSPATPGIRGAGPQCGRKGKPV
LWSTHRMPHRTLAHTSSHFNSARTLQGGYFTDQEAQDHTGLKSITTFIYPYNETLRDTTV
YTSNWKAVSDSFKCSDLQKAPAPITERKRAACKCPKHGPERKAECKRQTQFACTQGFAEV
YLYPAPHGSWGAPCRWLALKQCQIFTGHPCGEYAVSSPLGMRPLWQGAAGGPKERTRTLT
GDPWKETKCQDLERRQGPQGTGRTAAWQVEKHLWHSRWLQPELQASLSPIKINSEAIKVS
TRVPSAEHHAKVLLAAEFGKGKGHNGKGKAKEREERALVLVQLLLNLEKITQ

>gi568815580r:63231785_63467118|GENSCAN_predicted_CDS_1|1239_bp
atgctggctctcctgcagctcaccttctgcggtgctgccaggttcctaacaggccacgga
cctgtaccggtccatggcctgggggctggggacccctggcttatgacacataatcacata
gcaaaatgcaacaggcggctgtcagatgatcttgctaaggcctgtgaacggcatcccagg
aatgcagtgatgtgggcagaaaccgagaccaggaaacgctgggagacgggctggcatgtg
cttcttggtaacgagagagcagagcccctggagagctgtgggatggctaactgcgggagc
cctgctactccgggaattagaggagcaggcccccagtgtggaaggaaagggaagccagtg
ctgtggagtacccaccgaatgccgcaccgcacacttgcacatacatcctctcacttcaac
tcagcaagaactctgcagggcgggtattttacagaccaggaagcccaagaccacacaggg
ctcaaaagcatcaccaccttcatttatccttacaatgaaaccttgagggacacgactgtc
tacacttctaattggaaagccgtatctgattcattcaaatgttcagatcttcaaaaagca
ccagcccccatcacagaaagaaagcgggcagcgtgtaagtgtcccaagcatggccccgag
agaaaagcagaatgcaaaaggcaaacgcagtttgcatgcacgcagggcttcgctgaggtc
tatttgtacccggctccccatggcagctggggagcaccttgccgttggttggcactgaag
cagtgccagatatttacagggcacccatgtggggagtacgctgtctcaagtcctctcggg
atgaggcctctgtggcaaggggctgcagggggcccaaaggaaagaacacggactctcacc
ggtgacccatggaaagaaaccaagtgccaagatctggagaggcgccagggtcctcaaggg
actgggagaacagctgcgtggcaagtggagaagcacctgtggcactccaggtggctccag
ccagaactccaggcctctctgtcgccaatcaaaataaacagtgaagcaatcaaagtgagc
actcgagtcccatcagcagagcaccacgctaaggtcttgctggcagcagagtttgggaag
gggaagggccacaatggcaaggggaaagcaaaagaaagagaagaaagggcccttgttctt
gtgcaattattattaaacttggagaaaataacacaataa

>gi568815580r:63231785_63467118|GENSCAN_predicted_peptide_2|506_aa
MAHAGRTGYDNREIVMKYIHYKLSQRGYEWDAGDVGAAPPGAAPAPGIFSSQPGHTPHPA
ASRDPVARTSPLQTPAAPGAAAGPALSPVPPVVHLTLRQAGDDFSRRYRRDFAEMSSQLH
LTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEY
LNRHLHTWIQDNGGWVACWNRREVSGTAYEPDTRLGLDSLHPKQAPLKQARCTLKLENNP
IRRIDSTEDQGHHQSVKFSKRGKPIGKGKITTVTALWRTCDEFHFGHSSRISKWKCPNQG
ELLSHSSVRCVMAEEPFIQDIGEEGSFIAFLQRRFICCPFAEHLGGANMNPFPSVRKPPL
SITRVQIPASMHKLGHRKRMAYLQRASWVGCVLSIRGKQLWVPGVEVRLLFHAKGNGLQQ
GTTGPHSLPGELSTHKLLDGREVPPVIFIFPFRKNPYSSPFSPAAACEPVSVSWVVQLQE
KDPRNGIVAAESHKKKACLANMKFEN

>gi568815580r:63231785_63467118|GENSCAN_predicted_CDS_2|1521_bp
atggcgcacgctgggagaacagggtacgataaccgggagatagtgatgaagtacatccat
tataagctgtcgcagaggggctacgagtgggatgcgggagatgtgggcgccgcgcccccg
ggggccgcccccgcaccgggcatcttctcctcccagcccgggcacacgccccatccagcc
gcatcccgggacccggtcgccaggacctcgccgctgcagaccccggctgcccccggcgcc
gccgcggggcctgcgctcagcccggtgccacctgtggtccacctgaccctccgccaggcc
ggcgacgacttctcccgccgctaccgccgcgacttcgccgagatgtccagccagctgcac
ctgacgcccttcaccgcgcggggacgctttgccacggtggtggaggagctcttcagggac
ggggtgaactgggggaggattgtggccttctttgagttcggtggggtcatgtgtgtggag
agcgtcaaccgggagatgtcgcccctggtggacaacatcgccctgtggatgactgagtac
ctgaaccggcacctgcacacctggatccaggataacggaggctgggtagcttgttggaac
cggagggaggtttcagggactgcttatgaaccagataccaggttgggtcttgacagtctg
catcccaaacaagctcccctgaaacaagcccgttgtacactaaaattggagaacaacccg
attagaagaatagactccacagaagaccaagggcatcatcaatcggtaaaattttccaaa
agaggaaaaccaatagggaaaggaaagataacaacagttactgctttgtggcgtacatgt
gatgaatttcattttggacattccagtaggatatccaagtggaaatgcccaaatcaagga
gaactgttaagccattcctcagtacgatgtgtcatggctgaagaaccattcattcaagac
attggtgaagagggttctttcattgcctttcttcaacgacggtttatttgctgtccattt
gctgagcacctgggtggtgccaacatgaacccatttccttctgtgcgcaagccccccctt
tctattaccagagtgcagatcccagctagcatgcataaattaggccacaggaaaaggatg
gcgtaccttcaaagagccagttgggttggctgtgttctttctattcgtggaaaacagctg
tgggtgccgggtgttgaagtcaggcttttgttccatgctaagggcaatggtcttcagcag
ggaacaacgggccctcattccctgccaggggagctgagtacacacaaactgctggatggg
cgagaagttcccccagtgatctttatttttccgtttagaaagaatccttattccagcccc
ttctctccagctgctgcgtgtgagcctgtctctgtctcttgggtggtgcagctgcaggaa
aaagatcctagaaatggaattgttgcagctgaaagccataaaaagaaagcttgtctggca
aatatgaaatttgaaaactga

>gi568815580r:63231785_63467118|GENSCAN_predicted_peptide_3|332_aa
MLLLAAAFLVAFVLLLYMVSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECYKQGAFIT
LVARNEDKLLQAKKEIEMHSINDKQVVLCISVDVSQDYNQVENVIKQAQEKLGPVDMLVN
CAGMAVSGKFEDLEVSTFERLMSINYLGSVYPSRAVITTMKERRVGRIVFVSSQAGQLGL
FGFTAYSASKFAIRGLAEALQMEVKPYNVYITVAYPPDTDTPGFAEENRTKPLETRLISE
TTSVCKPEQVAKQIVKDAIQGNFNSSLGSDGYMLSALTCGMAPVTSITEGLQQVVTMGLF
RTIALFYLGSFDSIVRRCMMQREKSENADKTA

>gi568815580r:63231785_63467118|GENSCAN_predicted_CDS_3|999_bp
atgctgctgctggctgccgccttcctcgtggccttcgtgctgctgctgtacatggtgtct
ccgctcatcagccccaagcccctcgccctgcccggggcgcatgtggtggttacaggaggt
tccagtggcatcgggaagtgcattgctatcgagtgctataaacaaggagcttttataact
ctggttgcacgaaatgaggataagctgctgcaggcaaagaaagaaattgaaatgcactct
attaatgacaaacaggtggtgctttgcatatcagttgatgtatctcaagactataaccaa
gtagagaatgtcataaaacaagcacaggagaaactgggtccagtggacatgctggtaaat
tgtgcaggaatggcagtgtcaggaaaatttgaagatcttgaagttagtacctttgaaagg
ttaatgagcatcaattacctgggcagcgtgtaccccagccgggccgtgatcaccaccatg
aaggagcgccgggtgggcaggatcgtgtttgtgtcctcccaggcaggacagttgggatta
ttcggtttcacagcctactctgcatccaagtttgccataaggggattggcagaagctttg
cagatggaggtgaagccatataatgtctacatcacagttgcttacccaccagacacagac
acacctggctttgccgaagaaaacagaacaaagcctttggagactcgacttatttcagag
accacatctgtgtgcaaaccagaacaggtggccaaacaaattgttaaagatgccatacaa
ggaaatttcaacagttcccttggctcagatgggtacatgctctcggccctgacctgtggg
atggctccagtaacttctattactgaggggctccagcaggtggtcaccatgggccttttc
cgcactattgctttgttttaccttggaagttttgacagcatagttcgtcgctgcatgatg
cagagagaaaaatctgaaaatgcagacaaaactgcctaa

>gi568815580r:63231785_63467118|GENSCAN_predicted_peptide_4|180_aa
MQEEAGEILSTTRTQPTIAALKVEEGATSQGVGHNNICQLNRSSYNVTLTFLPGMGESMS
PPLKIGLASVNIVIHGIWQERHYVTSEARLLKVVQLPFWSLEYLLLKLQSSVTMSAVRLP
RGSHAVWKPKHPTQSSHLEQPQVSMKRAIQPAPSCISCPAAVGLHLCRALLARSTWPSPS

>gi568815580r:63231785_63467118|GENSCAN_predicted_CDS_4|543_bp
atgcaagaagaggcaggagagatcttaagcacaactaggactcaacccaccattgctgct
ttgaaagtggaggagggggccacaagccaaggagttggccacaacaacatctgccaactc
aaccgctcctcttacaatgtcaccttgacattccttccagggatgggggaatccatgtcc
cctcccctcaaaattgggttggcttctgtgaatattgtgatccatggaatatggcaggag
agacactatgtgacttcagaggctagattgctaaaggtggtacagcttccattttggtcc
ctggaatacttgctcctgaagttgcagtcatcagtcaccatgtcagcagtcagactgccc
cgtggcagccatgctgtgtggaagcccaaacatcctacgcagagcagccacttggagcaa
ccccaggtctccatgaagagggctatccagccagcgcccagttgcatcagctgtccagca
gctgtgggactgcacctgtgcagagctctcctagccagaagcacctggccaagcccttcc
tga

>gi568815580r:63231785_63467118|GENSCAN_predicted_peptide_5|378_aa
MIGGLDKQIKDITEVIEQPVKHSKLFEALGITQPRVVLLSISSSQLEGGSGGDSEVLHIV
LELLNQLDSFEAPKKIKKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGD
KAKQSIRAKCTEYLDRAEKLKEYLKNKEKKAQKPVKEGQPSPADEKGNDSDGEGESDDPE
KKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGVGVDNDGILV
LGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTD
GYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEM
TWMDVPGDKLLEPVVSMV

>gi568815580r:63231785_63467118|GENSCAN_predicted_CDS_5|1137_bp
atgattggtggactggacaagcagattaaggacatcacagaagtgatcgagcagcctgtt
aagcattccaagctctttgaagcactgggtatcacacaacccagggtggtactgctctcc
atcagctcctcgcagctggaggggggttctggaggggacagtgaagtgctgcacatcgtg
ctggaactgctcaaccaactggacagctttgaggcccccaagaagatcaagaaagcgata
gatctggctagcaaagcagcgcaagaagacaaggctgggaactacgaagaagcccttcag
ctctatcagcatgctgtgcagtattttcttcatgtcgttaaatatgaagcacagggtgat
aaagccaagcaaagtatcagggcaaagtgtacagaatatcttgatagagcagaaaaacta
aaggagtacctgaaaaataaagagaaaaaagcacagaagccagtgaaagaaggacagccg
agtccagcagatgagaaggggaatgacagtgatggggaaggagaatctgatgatcctgaa
aaaaagaaactacagaatcaacttcaaggtgccattgttatagaacgaccaaatgtgaaa
tggagtgacgttgctggacttgaaggagccaaagaagcactgaaagaggctgtgatactg
cctattaaatttcctcatctttttacaggggttggtgtagacaatgatggaattttggtt
ctgggagctacaaatataccctgggttctggattctgccattaggcgaagatttgagaaa
cgaatttatattcccttgccggaaccccatgcccgagcagcaatgtttaaactgcaccta
gggaccactcagaacagtctcacggaagcagactttcgggaacttgggaggaaaacagat
ggttattcaggggcagatataagtatcattgtacgtgatgcccttatgcagcctgttagg
aaagtacagtcagctactcattttaaaaaggttcgcggaccttcccgagctgatcctaac
catcttgtagatgatctgctaacaccttgctctccaggtgaccctggtgccattgaaatg
acatggatggatgtccctggagataaacttttggagccagttgtttccatggtttga

>gi568815580r:63231785_63467118|GENSCAN_predicted_peptide_6|121_aa
MIPGGWAKWMTWRSSQAVPKGTRGEESQQQQRRSAHGLLSEKVVHFQDPPTGGFGPVTAP
SLRVLCGMGAITVLVSVVNNSGGSARIVLPNLYHPGSKHRALSLPCIYPSFLPTCEFAFA
K

>gi568815580r:63231785_63467118|GENSCAN_predicted_CDS_6|366_bp
atgatacctggaggttgggcgaagtggatgacatggcggagttcccaggcggttcccaag
ggaacgaggggcgaggagagccaacagcagcaacgtcgaagcgcgcacgggcttttgagt
gaaaaagtcgtccatttccaagacccgccgactgggggctttgggcctgtgactgcgcct
tcactccgtgtcctctgtggaatgggggcgatcaccgtcctcgtctcggtggtgaataat
tcaggagggagtgcgcgaatagtattgccaaatctgtatcatccaggctcgaagcacaga
gccctctctctgccctgcatctacccgtcctttcttcccacttgtgaatttgccttcgca
aaatga

>gi568815580r:63231785_63467118|GENSCAN_predicted_peptide_7|373_aa
XGNQCKLNCSNPEEKENNCHLPTACCTVIEKSESSEEVPVLVTGQRYTVANCVWRSSRGK
QLSSSLLLKVRSLEKQDPHHLRADDEMQNLGPTPGLMNRNLLFNKTPRQQETYSFINTYP
MAREHKALSGQLQAGRPQGSMLIGQTLVTCPSPDQLVLSKSVTNETPRERERKASQKCDQ
QSEGVSVFLGPGQSRPVRDDWTCAAEGYSHPESPVLPELGAEMQSSPAKRHSPTQQTGTW
PPKPELCSYFTATISINITADLEAVNVCKLWIHNVNPPSRVLEPEKKDGEKHQAEEQLYS
IGRISLTWSLSELTRLHGEALGIKCQNSLQDLSERPYKDLRVDLVTAILALQILPIQKTT
GMSYSGEEALSGQ

>gi568815580r:63231785_63467118|GENSCAN_predicted_CDS_7|1122_bp
nnaggtaatcagtgtaaactaaattgttctaacccggaggaaaaagaaaacaactgtcat
cttccaactgcctgctgtacagtaattgagaagtctgaatctagtgaggaggttcctgtc
cttgtcacaggacagagatataccgttgcaaattgtgtatggaggtcttctcgtgggaaa
cagttatctagctccttgttactaaaagtgaggtccttagagaaacaggatccacatcac
ctgagagctgacgatgaaatgcagaaccttggacccaccccaggcctaatgaacaggaac
ctgctttttaacaagacccccaggcaacaggagacctacagcttcatcaacacctacccc
atggccagagagcacaaagctctatccggccagctccaggcaggcagacctcaaggcagc
atgctgattggccaaactctggtcacatgtccatctccagaccaattagtattgtccaag
tctgttaccaatgaaaccccaagggaaagggaaagaaaagcaagccaaaagtgtgaccag
cagtccgaaggagtgtcagtgttcctgggcccaggccaaagcaggcctgtcagggatgac
tggacatgtgctgctgagggttacagccatcctgagagcccagtcttgccagagttggga
gcagaaatgcagtccagcccagcaaagagacacagcccaacccagcaaacaggaacttgg
cccccaaagccagagctgtgctcatatttcactgccacaatctccatcaatataactgct
gatctggaagctgtgaatgtttgtaagctctggatacataatgtcaatccaccttccaga
gttctggagcccgaaaagaaggatggagaaaaacaccaagcagaggagcagctttactca
atcggtagaatatccctaacttggagcctatcagagctgacccgactacatggagaagcc
ttgggcattaagtgtcagaattcactgcaagatctgagtgagagaccttacaaagatctg
cgtgttgatttagtgacagcaatcttggcactccaaattttgccaatccaaaagacaact
ggaatgagttactctggagaagaggcactcagtggacaataa