GENSCAN 1.0	Date run:  3-Nov-116	Time: 01:45:58

Sequence gi568815580r:47929263_48141107 : 211845 bp : 47.03% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.07 Intr -   1184   1099   86  0  2  114  103    33 0.755   6.94
 1.06 Intr -   2278   2093  186  2  0  112   60   180 0.857  17.26
 1.05 Intr -  16401  16338   64  0  1  115   53    19 0.022  -0.61
 1.04 Intr -  26304  26196  109  2  1   78   77   143 0.230  12.49
 1.03 Intr -  41880  41845   36  2  0   95   75    45 0.048   1.28
 1.02 Intr -  47599  47543   57  0  0   71   98    41 0.070   1.40
 1.01 Init -  50750  50719   32  2  2   76   88    39 0.103   1.92
 1.00 Prom -  71894  71855   40                              -3.16

 2.03 PlyA -  72987  72982    6                               1.05
 2.02 Term -  79039  78867  173  2  2   59   47   125 0.146   3.49
 2.01 Init -  90279  90222   58  0  1   75   98    81 0.759   7.29
 2.00 Prom -  97641  97602   40                              -6.86

 3.15 PlyA -  98090  98085    6                               1.05
 3.14 Term - 100649  99998  652  1  1   93   44  1163 0.764 105.91
 3.13 Intr - 102013 101938   76  2  1   92   85    41 0.230   2.77
 3.12 Intr - 107388 107363   26  2  2  129   30    22 0.075  -1.83
 3.11 Intr - 111861 110638 1224  2  0  125   85  2090 0.595 199.70
 3.10 Intr - 125158 125055  104  1  2  141   28    29 0.021   1.17
 3.09 Intr - 131661 131492  170  1  2   79   65    41 0.019   0.57
 3.08 Intr - 145237 145076  162  2  0   59   22   131 0.164   3.55
 3.07 Intr - 146484 146431   54  1  0  117   70    27 0.290   2.75
 3.06 Intr - 153149 153123   27  0  0   94   80    38 0.121   1.69
 3.05 Intr - 154656 154589   68  2  2   57  106    10 0.096  -1.75
 3.04 Intr - 155296 155177  120  0  0  106   68    27 0.603   2.11
 3.03 Intr - 155994 155856  139  1  1  125  102    13 0.869   5.92
 3.02 Intr - 162679 162573  107  0  2   61   64    61 0.261   0.86
 3.01 Init - 164988 164927   62  0  2   47   82    46 0.232   0.62
 3.00 Prom - 166041 166002   40                              -0.26

 4.00 Prom + 174349 174388   40                              -2.86
 4.01 Init + 185393 185429   37  1  1   86  106     0 0.212   1.78
 4.02 Term + 190060 190196  137  2  2   64   47   130 0.387   4.68
 4.03 PlyA + 191354 191359    6                               1.05

 5.03 PlyA - 193134 193129    6                               1.05
 5.02 Term - 195761 195702   60  2  0   86   55    55 0.650  -0.20
 5.01 Init - 198345 198175  171  0  0   70  110   134 0.973  13.26
 5.00 Prom - 201397 201358   40                              -3.36

 6.04 PlyA - 201637 201632    6                               1.05
 6.03 Term - 206659 206576   84  1  0   71   36    87 0.471  -0.55
 6.02 Intr - 207519 207365  155  1  2   31   83    58 0.261  -0.61
 6.01 Init - 207871 207745  127  1  1   32   94   149 0.374   8.22

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 104790 104610  181  2  1   70   39   135 0.825   3.88


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815580r:47929263_48141107|GENSCAN_predicted_peptide_1|190_aa
MDAREGGLDLRIVPYHRLDVQYAVGHSDTRFAGMMSGKRCEGQCGSKVPAQDSGDVDTWV
LVEQWNALEKDSLETKLEGFKGSPQTNPVLDHFRQPEARGASSALRGASPWDEHVSAAGL
TTDGGRGGRPLQAPPTTLARDRAVTGNRLNARQGAGLSLSAPPSIPSEEEGTKGPGPPGS
DGAGPGATLQ

>gi568815580r:47929263_48141107|GENSCAN_predicted_CDS_1|570_bp
atggatgccagagaaggtggcctcgacttgagaattgtcccatatcacagactggatgtc
cagtatgctgtggggcacagtgatacaagatttgcaggaatgatgtctggcaaacgctgt
gaaggacaatgtggcagcaaggtacctgcccaggacagtggagatgtggacacctgggtg
ctggtagagcagtggaacgccctggagaaggacagcctggagacaaaacttgagggcttt
aaaggatctccacaaaccaaccctgtattagatcactttcgtcagcctgaggcaagaggc
gcgtcctccgcgctgcgcggggcctccccgtgggatgagcacgtgtccgctgccggcctc
acgacggacggtggacgaggcggcaggcccctacaggccccacccacgacgctggcgagg
gatcgggcggtcaccgggaatcgtcttaatgcgcggcaaggcgcgggcctctccctctcc
gcccccccctccatcccatcggaagaggaaggaacaaaaggtcccggaccccccggatct
gacggggcgggacctggcgccaccttgcag

>gi568815580r:47929263_48141107|GENSCAN_predicted_peptide_2|76_aa
MVKPLPVTLGAALNILLPEVRSAGNKARGGAGSVRRLGPGTGILGSTDARNKSSCASRHA
VGDYSEERKLGGNEAL

>gi568815580r:47929263_48141107|GENSCAN_predicted_CDS_2|231_bp
atggtcaagcccctccctgtgacactgggagctgcactaaacatcctcttgcctgaagtg
cgcagcgcagggaacaaagcccgcggcggggcggggtcggttcggcggctgggtccgggc
accgggattctgggaagcaccgacgcccgaaacaaaagcagctgtgcttctaggcacgct
gttggagattattccgaggagcgcaagctgggagggaatgaggcgctgtga

>gi568815580r:47929263_48141107|GENSCAN_predicted_peptide_3|996_aa
MRGTQPDDIIIQAAVTTLPIRTGGVGCEEKHWPKCEYTEHWTLPNGINGGHRVASEAYSQ
LYLQSLLSGQSLRPLESKVCVFFAFLPTPTRPAVKPSRGPGSRHTVGPGSCWMPQKSADM
PSGVRSEEQRSCRDLKSHLPPLLIGSSPNGSTEALPFFRDKIGGENKEQDFGNVGRMTLT
CVVSFLPFYLGKVVLIHSYDSRLLSTYCVPGQRAMETEEVPASHVQGAVLYEGKSDISGM
TAPQMEAPFTLRAMGVPDPPTLTLQHPLWSADPIPSTSHPRAISPALPRPITIAPIFHLH
LHVLPPPTAAPPRPDPTWRSGVEKGRGVAVNNAERLPGALAENMANDIDELIGIPFPNHS
SEVLCSLNEQRHDGLLCDVLLVVQEQEYRTHRSVLAACSKYFKKLFTAGTLASQPYVYEI
DFVQPEALAAILEFAYTSTLTITAGNVKHILNAARMLEIQCIVNVCLEIMEPGGDGGEED
DKEDDDDDEDDDDEEDEEEEEEEEEDDDDDTEDFADQENLPDPQDISCHQSPSKTDHLTE
KAYSDTPRDFPDSFQAGSPGHLGVIRDFSIESLLRENLYPKANIPDRRPSLSPFAPDFFP
HLWPGDFGAFAQLPEQPMDSGPLDLVIKNRKIKEEEKEELPPPPPPPFPNDFFKDMFPDL
PGGPLGPIKAENDYGAYLNFLSATHLGGLFPPWPLVEERKLKPKASQQCPICHKVIMGAG
KLPRHMRTHTGEKPYMCTICEVRFTSKDPDMLPSVPASIHGNVLFSPALPLENHFENESW
QDKLKIHMRKHTGERPYLCIHCNAKFVHNYDLKNHMRIHTGVRPYQCEFCYKSFTRSDHL
HRHIKRQSCRMARPRRGRKPAAWRAASLLFGPGGPAPDKAAFVMPPALGEVGGHLGGAAV
CLPGPSPAKHFLAAPKGALSLQELERQFEETQMKLFGRAQLEAERNAGGLLAFALAENVA
AARPYFPLPDPWAAGLAGLPGLAGLNHVASMSEANN

>gi568815580r:47929263_48141107|GENSCAN_predicted_CDS_3|2991_bp
atgagagggactcagccagatgatatcattatccaggcagctgtgaccacattacccatc
aggactggaggagttgggtgtgaagagaagcactggcctaagtgtgaatacacagagcac
tggactctgccaaatgggataaacggaggccaccgagtggcctctgaagcatactcccag
ctctacctccaaagcctgctctcaggacagagcctaaggccccttgaaagcaaggtctgt
gtcttcttcgcctttttacctacccccacccgccctgccgtaaagcccagcagaggacca
ggctcaaggcatactgtgggtccaggttcatgctggatgccccagaaaagtgcagacatg
cccagtggagtcaggtcagaggagcagaggagctgcagggacctcaagagccacctgccg
ccactgctgattggaagttcaccaaatgggtccactgaagctcttcctttcttcagggac
aagataggaggggaaaataaggaacaggacttcggtaatgtagggaggatgacgctgacc
tgtgtcgtgtcatttctacctttctacctggggaaagtggtgctcatccattcctatgac
agtcgtctgctgagcacctactgtgtaccaggccagagggccatggagacagaggaggtc
cctgcttctcatgtgcaaggggctgtgttatatgaaggaaaaagcgatatctcaggaatg
actgccccccagatggaggcccctttcactctacgggctatgggtgtacctgatcccccg
acactcaccctgcagcacccgctgtggtctgctgaccccatccccagcacctcacacccc
agagctatttctcctgctctccccaggcccatcacaatagcacctattttccacttacat
ctccatgtgctgccaccccccacggcagctcctccccggccagatcccacatggaggtct
ggggtagagaagggcaggggagtggccgtgaataatgcagagcggcttcctggggctctg
gctgagaacatggccaatgacattgatgagctcattggcattcccttccccaaccacagc
agtgaggtcctgtgcagcctcaatgagcaacggcacgatggcctgctgtgtgacgtgctc
ctggtggtgcaggagcaggagtatcggacccaccgctccgtcctggctgcctgcagcaag
tacttcaagaagcttttcacagccggcaccctagccagccagccctacgtctatgagatc
gactttgtccagcctgaggctctggctgctatcctggagttcgcctacacctccacgctc
accatcaccgctggcaatgtcaagcacatcctcaacgcagccaggatgctggagatccag
tgcatcgtgaacgtgtgcctggagatcatggagcctgggggggacgggggggaggaggat
gacaaggaggacgatgacgacgacgaagatgatgatgatgaggaggacgaagaggaggag
gaggaagaggaggaggatgacgatgatgacacggaggactttgctgaccaagaaaacttg
cctgacccccaggacatcagctgccaccaaagcccttccaagacagaccatctcacagag
aaggcctattcagacacccccagggacttccctgactccttccaggctggcagtcctggc
catctgggggtgatccgggacttctccatcgaatctctgctaagggagaacctgtacccc
aaggccaacatccccgacaggagaccctccttgtctccattcgccccggacttctttcca
cacctctggccaggggacttcggtgcctttgcccagctgcctgagcagcccatggacagt
gggccactggatctggtcatcaagaatcggaagatcaaggaggaggagaaggaggagctg
cccccacccccaccgccacccttccctaatgacttcttcaaggacatgttccctgacctg
ccgggggggcctctgggacccatcaaggcggagaacgactacggtgcctatctcaacttc
ctgagtgccacccacctgggaggcctcttcccaccctggcccctggtagaagagcgcaag
ctgaagcccaaggcctctcagcagtgccccatctgccacaaagtcatcatgggggccggg
aagctgccgcggcacatgaggacccataccggggagaagccatacatgtgcaccatctgc
gaggtccgcttcaccagcaaggacccagacatgctgccctcagtgcctgccagtattcat
gggaatgtccttttctctcctgctctgcccctggagaaccattttgaaaatgagagctgg
caggacaagctgaaaatccacatgcggaagcacacaggggagcggccctacctgtgcatc
cactgcaacgccaagttcgtgcacaactacgacctcaagaaccacatgcgcatccacacg
ggcgtgcggccctaccagtgcgagttctgctacaagagcttcacgcgctctgaccacctg
caccgccacatcaagcgccagagctgccgcatggcacggccccgacgcggccgcaagcct
gctgcgtggagggccgccagcctgctcttcgggcccggcggcccggcccccgacaaggcg
gccttcgtgatgccccctgcgctgggcgaggtgggcggccacctgggcggcgcagctgtg
tgcctcccgggccccagccccgccaagcacttcctggcagcgcccaagggcgccctgagc
ctgcaagagctggagcggcagttcgaggagacacagatgaagctgttcgggcgcgcgcag
ctggaggctgagaggaacgcggggggcctcctggccttcgcgctggccgagaacgtggcg
gcggcgcggccctacttcccgctgcccgacccttgggccgccggcctggccggcctccct
gggctcgccggcctcaaccacgtggcctccatgtccgaagccaacaactag

>gi568815580r:47929263_48141107|GENSCAN_predicted_peptide_4|57_aa
MQTSPILLTPKMGEKEPEHQASAGATPAQAQAQCKRVFVPTASPMLMEDLRSTHSFP

>gi568815580r:47929263_48141107|GENSCAN_predicted_CDS_4|174_bp
atgcagacatctccaatattactgaccccaaaaatgggtgagaaggagccagaacatcaa
gccagtgcaggcgcaaccccagcgcaggcgcaagcccagtgcaagcgagtctttgttcct
actgccagccccatgctcatggaagacctgcgttccacacattccttcccctga

>gi568815580r:47929263_48141107|GENSCAN_predicted_peptide_5|76_aa
MLAHKAFLTTSGGHRRRCLISKDKAAPTVCGPHADPCRTPMQVFGPFLLKSCHPFSQWPL
HSACDRGVSPATADES

>gi568815580r:47929263_48141107|GENSCAN_predicted_CDS_5|231_bp
atgctggcccacaaggccttcctcacaaccagtgggggccatcgaaggcgatgcctcatc
agcaaagacaaagcagcacctactgtgtgcggaccccatgctgacccctgtaggacaccc
atgcaggtctttggccccttccttctaaagagttgtcatccatttagccagtggcccctg
cattctgcctgtgaccgtggcgtttctcctgccacggctgatgaaagctga

>gi568815580r:47929263_48141107|GENSCAN_predicted_peptide_6|121_aa
MTTSRRLRQAPASSAAAWIPSPGPWRRSGHGPGTSAASPGRPASPELLRGVGPRTSSEIG
ERIWNSAESNSRHCPIAAGPRQRAPLGRGASRRNLVPSFAQKEAPLQRLIGRLVADHFQF
F

>gi568815580r:47929263_48141107|GENSCAN_predicted_CDS_6|366_bp
atgacaacctcccgccggctgcggcaggctcccgcgagcagcgcggccgcgtggattccc
agcccgggaccctggcggcgctcaggacacggcccgggcacgagcgcggcgtccccgggg
cggccagcctcgccggagctcctgcggggcgtggggccacgcacctcttccgaaatagga
gagaggatctggaactctgcagagagcaactctcgccactgccccattgccgccggccca
cgccagcgggctcctttggggcgaggggccagccgaaggaacctggtacccagcttcgcg
cagaaggaagccccactccagcgacttattggtcggctagtggcagaccacttccagttc
ttctaa