GENSCAN 1.0	Date run:  4-Nov-116	Time: 06:31:38

Sequence gi568815579r:42385076_42585714 : 200639 bp : 47.17% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.05 PlyA -   1963   1958    6                               1.05
 1.04 Term -   2167   2078   90  1  0  117   49   111 0.956   7.82
 1.03 Intr -   2401   2265  137  2  2   78   85   266 0.999  25.59
 1.02 Intr -   3964   3851  114  2  0  119   65   161 0.999  17.32
 1.01 Init -   4450   4414   37  1  1   82   81    79 0.404   6.77
 1.00 Prom -   5256   5217   40                              -4.46

 2.14 PlyA -   7677   7672    6                               1.05
 2.13 Term -  12224  11833  392  0  2   66   47   204 0.648   9.25
 2.12 Intr -  16397  16213  185  1  2   60   45    69 0.263  -0.77
 2.11 Intr -  17000  16843  158  2  2  117   30   337 0.640  29.61
 2.10 Intr -  17956  17532  425  2  2   84   77   391 0.995  31.19
 2.09 Intr -  20486  20310  177  0  0   74  109   209 0.999  21.49
 2.08 Intr -  21361  21086  276  2  0  119   81   273 0.904  27.19
 2.07 Intr -  22393  22099  295  1  1  125   85   360 0.999  35.98
 2.06 Intr -  22716  22531  186  0  0   93   91   218 0.999  22.49
 2.05 Intr -  23046  22901  146  1  2  107   85   281 0.999  29.70
 2.04 Intr -  23247  23157   91  0  1   80   70   164 0.982  13.37
 2.03 Intr -  25767  25232  536  1  2   79   99   914 0.670  84.24
 2.02 Intr -  38508  38344  165  1  0   26  105   103 0.385   5.73
 2.01 Init -  42074  41192  883  2  1   78  109   305 0.832  26.22
 2.00 Prom -  43170  43131   40                              -6.76

 3.13 PlyA -  43488  43483    6                               1.05
 3.12 Term -  48103  47930  174  1  0   96   43    90 0.910   3.06
 3.11 Intr -  48781  48701   81  1  0   79   86    47 0.517   3.43
 3.10 Intr -  60489  60325  165  0  0   44   70   100 0.023   3.96
 3.09 Intr - 104067 104011   57  0  0  106   87    30 0.036   3.78
 3.08 Intr - 125845 125814   32  2  2  100  121    30 0.004   5.35
 3.07 Intr - 126553 126501   53  0  2   35   98    16 0.003  -4.15
 3.06 Intr - 127404 127275  130  1  1  104   80    79 0.005   8.45
 3.05 Intr - 134160 133873  288  1  0   86   93   281 0.301  25.62
 3.04 Intr - 136413 136192  222  1  0   97  119   142 0.560  16.30
 3.03 Intr - 137127 136849  279  1  0   61   76   280 0.998  21.55
 3.02 Intr - 142325 141966  360  0  0  110   84   306 0.527  27.59
 3.01 Init - 143299 143236   64  1  1  107   94    20 0.742   3.95
 3.00 Prom - 159423 159384   40                              -4.16

 4.06 PlyA - 159505 159500    6                               1.05
 4.05 Term - 161744 161479  266  0  2  124   40    80 0.216   2.47
 4.04 Intr - 163581 163484   98  2  2  103   24    53 0.204   0.05
 4.03 Intr - 168800 168759   42  1  0  125  105    38 0.334   6.56
 4.02 Intr - 170848 170731  118  2  1  104   74    45 0.179   4.22
 4.01 Intr - 187368 187285   84  1  0  112    0    73 0.005   0.69

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 127226 127371  146  1  2   82   94   159 0.969  15.49
S.002 Term + 128587 128611   25  1  1  144   51    32 0.990   2.80


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815579r:42385076_42585714|GENSCAN_predicted_peptide_1|125_aa
MQFEMHDNVKGKAMSYPVTSQPQCATTSCYQTQLSDWHTGLTDCCNDMPVCLCGTFAPLC
LACRISDDFGECCCAPYLPGGLHSIRTGMRERYHIQGSVGHDWAALTFCLPCALCQMARE
LKIRE

>gi568815579r:42385076_42585714|GENSCAN_predicted_CDS_1|378_bp
atgcagtttgagatgcacgacaacgtgaaaggcaaagctatgtcctaccctgtgaccagt
cagccccagtgcgccaccaccagctgctaccagacccagctcagtgactggcacacaggt
ctcacggactgctgcaacgacatgcctgtctgtctgtgcggcacttttgctcctctgtgc
cttgcctgccgcatctccgacgactttggcgagtgctgctgcgcgccctacctgcccgga
ggcctgcactccatccgcaccggcatgcgggagcgctaccacatccagggctccgtcggg
cacgactgggcggccctcaccttttgtctgccctgcgccctctgccagatggcgcgggaa
ctgaagatccgagagtaa

>gi568815579r:42385076_42585714|GENSCAN_predicted_peptide_2|1304_aa
MEPGSKSVSRSDWQPEPHQRPITPLEPGPEKTPIAQPESKTLQGSNTQQKPASNQRPLTQ
QETPAQHDAESQKEPRAQQKSASQEEFLAPQKPAPQQSPYIQRVLLTQQEAASQQGPGLG
KESITQQEPALRQRHVAQPGPGPGEPPPAQQEAESTPAAQAKPGAKREPSAPTESTSQET
PEQSDKQTTPVQGAKSKQGSLTELGFLTKLQELSIQRSALEWKALSEWVTDSESESDVGS
SSDTDSPATMGGMVAQGVKLGFKGKSGYKVMSGYSGTSPHEKTSARNHRHYQDTGPRGWN
WPPREDRGELMELAGGTEPAEAAMAPASKNAKEGSRSHGRRRWRKDKAKASRLIHNMDLR
TMTQSLVTLAEDNIAFFSSQGPGETAQRLSGVFAGVREQALGLEPALGRLLGVAHLFDLD
PETPANGYRSLVHTARCCLAHLLHKSRYVASNRRSIFFRTSHNLAELEAYLAALTQLRAL
VYYAQRLLVTNRPGVLFFEGDEGLTADFLREYVTLHKGCFYGRCLGFQFTPAIRPFLQTI
SIGLVSFGEHYKRNETGLSVAASSLFTSGRFAIDPELRGAEFERITQNLDVHFWKAFWNI
TEMEVLSSLANMASATVRVSRLLSLPPEAFEMPLTADPTLTVTISPPLAHTGPGPVLVRL
ISYDLREGQDSEELSSLIKSNGQRSLELWPRPQQAPRSRSLIVHFHGGGFVAQTSRSHEP
YLKSWAQELGAPIISIDYSLAPEAPFPRALEECFFAYCWAIKHCALLGLCPCQVVTNHPS
PKPGSTGERICLAGDSAGGNLCFTVALRAAAYGVRVPDGIMAAYPATMLQPAASPSRLLS
LMDPLLPLSVLSKCVSAYAGAKTEDHSNSDQKALGMMGLVRRDTALLLRDFRLGASSWLN
SFLELSGRKSQKMSEPIAEPMRRSVSEAALAQPQGPLGTDSLKNLTLRDLSLRGNSETSS
DTPEMSLSAETLSPSTPSDVNFLLPPEDAGEEAEAKNELSPMDRGLGVRAAFPEGFHPRR
SSQGATQMPLYSSPIVKNPFMSPLLAPDSMLKSLPPVHIVACALDPMLDDSVMLARRLRN
LGQPVTLRVVEDLPHGFLTLAALCRETRQAAELGQHRTQAAGNQETWNEGYGGLDFWDQK
GVDSLVTRTHLPSDFIQVHCQEMLGPQLLPLKTFASLSLTVFHPSYVQNPNTRRAGKGLP
GQTRRTRSLASPLGPLRSGPGFRSLRFRVYWPTDWAWQRLASPKAYRCPSWAVGPAYQAK
GPEWPREVEGRVSIGWKIVTDVMDSFRRQTPKKRLACRTRLRRD

>gi568815579r:42385076_42585714|GENSCAN_predicted_CDS_2|3915_bp
atggagccaggttctaagtcagtgtctaggtcagactggcaacctgaaccacaccagagg
cctataaccccgctagagcctgggccagaaaagacacccatagcccagccagaatcgaag
actctgcagggatccaatacccaacagaagcctgcttcaaaccaaagacccctcacccag
caggagacccctgcacaacatgatgctgaatcccagaaggaacctagagcccaacaaaaa
tctgcttcacaagaggaatttcttgccccacagaagcccgcaccacagcaatcaccttac
atccaaagggtgctgctcactcaacaggaagctgcctcccagcagggacctgggctagga
aaagaatctataactcaacaggagccagcattgagacaaagacatgtagcccagccaggg
cctgggccaggagagccacctccagctcaacaagaagctgaatcaacacctgcggcccag
gctaaacctggagccaaaagggagccatctgccccgactgaatctacgtcccaagagaca
cctgaacagtcagacaagcaaacaacgccagtccagggagccaaatccaagcagggatct
ttgacagagctgggatttctaacaaaacttcaggaactatccatacagcgatcagcccta
gagtggaaggcactttctgagtgggtcacagattctgagtcagaatcagatgtgggatca
tcttcagacacagattctccagccacgatgggtggaatggtggcccagggagtgaagcta
ggcttcaaaggaaaatctggttataaagtgatgtcaggatacagtgggacgtcgccacat
gagaaaaccagtgctcggaatcacagacactaccaggatacagggcctcgcggctggaat
tggcccccgcgggaggaccgcggggaattgatggagttggccgggggaacggagcccgcc
gaggccgctatggccccggcctcgaagaatgccaaagagggctcaaggagccacggtcgc
cggcggtggcgaaaagacaaggccaaagcctcaaggctcatccacaacatggacctgcgc
acaatgacacagtcgctggtgactctggcggaggacaacatagccttcttctcgagccag
ggtcctggggaaacggcccagcggctgtcaggcgtttttgccggtgtacgggagcaggcg
ctggggctggagccggccctgggccgcctgctgggtgtggcgcacctctttgacctggac
ccagagacaccggccaacgggtaccgcagcctagtgcacacagcccgctgctgcctggcg
cacctcctgcacaaatcccgctatgtggcctccaaccgccgcagcatcttcttccgcacc
agccacaacctggccgagctggaggcctacctggctgccctcacccagctccgcgctctg
gtctactacgcccagcgcctgctggttaccaatcggccgggggtactcttctttgagggc
gacgaggggctcaccgccgacttcctccgggagtatgtcacgctgcataagggatgcttc
tatggccgctgcctgggcttccagttcacgcctgccatccggccattcctgcagaccatc
tccattgggctggtgtccttcggggagcactacaaacgcaacgagacaggcctcagtgtg
gccgccagctctctcttcaccagcggccgctttgccatcgaccccgagctgcgtggggct
gagtttgagcggatcacacagaacctggacgtgcacttctggaaagccttctggaacatc
accgagatggaagtgctatcgtctctggccaacatggcatcggccaccgtgagggtaagc
cgcctgctcagcctgccacccgaagcctttgagatgccactgactgccgaccccacgctc
acggtcaccatctcacccccactggcccacacaggccctgggcccgtcctcgtcaggctc
atctcctatgacctgcgtgaaggacaggacagtgaggagctcagcagcctgataaagtcc
aacggccaacggagcctggagctgtggccgcgcccccagcaggcaccccgctcgcggtcc
ctgatagtgcacttccacggcggtggctttgtggcccagacctccagatcccacgagccc
tacctcaagagctgggcccaggagctgggcgcccccatcatctccatcgactactccctg
gcccctgaggcccccttcccccgtgcgctggaggagtgcttcttcgcctactgctgggcc
atcaagcactgcgccctccttggcctctgcccctgccaggttgtcaccaaccacccctct
cccaaaccaggctcaacaggggaacgaatctgccttgcgggggacagtgcaggcgggaac
ctctgcttcaccgtggctcttcgggcagcagcctacggggtgcgggtgccagatggcatc
atggcagcctacccggccacaatgctgcagcctgccgcctctccctcccgcctgctgagc
ctcatggaccccttgctgcccctcagtgtgctctccaagtgtgtcagcgcctatgctggt
gcaaagacggaggaccactccaactcagaccagaaagccctcggcatgatggggctggtg
cggcgggacacagccctgctcctccgagacttccgcctgggtgcctcctcatggctcaac
tccttcctggagttaagtgggcgcaagtcccagaagatgtcggagcccatagcagagccg
atgcgccgcagtgtgtctgaagcagcactggcccagccccagggcccactgggcacggat
tccctcaagaacctgaccctgagggacttgagcctgaggggaaactccgagacgtcgtcg
gacacccccgagatgtcgctgtcagctgagacacttagcccctccacaccctccgatgtc
aacttcttattaccacctgaggatgcaggggaagaggctgaggccaaaaatgagctgagc
cccatggacagaggcctgggcgtccgtgccgccttccccgagggtttccacccccgacgc
tccagccagggtgccacacagatgcccctctactcctcacccatagtcaagaaccccttc
atgtcgccgctgctggcacccgacagcatgctcaagagcctgccacctgtgcacatcgtg
gcgtgcgcgctggaccccatgctggacgactcggtcatgctcgcgcggcgactgcgcaac
ctgggccagccggtgacgctgcgcgtggtggaggacctgccgcacggcttcctgacccta
gcggcgctgtgccgcgagacgcgccaggccgcagagctggggcagcatcggactcaagcg
gctgggaaccaagaaacctggaatgaggggtatgggggactggatttttgggaccagaag
ggagtggactccttggtaacccggacccacctcccctcggacttcatccaggtacactgc
caggagatgctgggtcctcagctcctccccttgaagaccttcgcctcactaagcctcacg
gttttccacccgagctatgtgcagaatcctaatactaggcgtgctggaaagggcttaccc
ggccagactcggagaacccgttccctcgcgagcccgctcgggcctctgcggagtggacca
ggattccgatccctcaggttccgggtctattggccgactgactgggcctggcagagactg
gcgtctccgaaagcctatcgctgcccgagttgggctgtgggccccgcctaccaggcaaag
ggtcctgagtggcccagggaggtagaaggccgagtgtccattggctggaagatagtgact
gacgtcatggatagctttcgccgccagactccaaagaagcgcctcgcgtgtcggacccgc
ctccggagggactga

>gi568815579r:42385076_42585714|GENSCAN_predicted_peptide_3|634_aa
MGHLSAPLHRVRVPWQGLLLTASLLTFWNPPTTAQLTTESMPFNVAEGKEVLLLVHNLPQ
QLFGYSWYKGERVDGNRQIVGYAIGTQQATPGPANSGRETIYPNASLLIQNVTQNDTGFY
TLQVIKSDLVNEEATGQFHVYPELPKPSISSNNSNPVEDKDAVAFTCEPETQDTTYLWWI
NNQSLPVSPRLQLSNGNRTLTLLSVTRNDTGPYECEIQNPVSANRSDPVTLNVTYTYYRP
GANLSLSCYAASNPPAQYSWLINGTFQQSTQELFIPNITVNNSGSYTCHANNSVTGCNRT
TVKTIIVTELSPVVAKPQIKASKTTVTGDKDSVNLTCSTNDTGISIRWFFKNQSLPSSER
MKLSQGNTTLSINPVKREDAGTYWCEVFNPISKNQSDPIMLNVNYNALPQENGLSPGAIA
GIVIGVVALVALIAVALACFLHFGKTGRASDQRDLTEHKPSVSNHTQDHSNDPPNKDTIG
DNGSFMKALTGMACQLKVKKRIQISLMVLCAVTAGPGMSSRLIQGAQGSHFTLNVLSPIG
AHHVYTCSSQGSPEATGTEARLLGDGSRKAAKNVSAKWKCKAQKMAIKALSYSLLSNVLT
LPSKQQCCCSRLVPESPEKKIHDSVWAAKEAVPL

>gi568815579r:42385076_42585714|GENSCAN_predicted_CDS_3|1905_bp
atggggcacctctcagccccacttcacagagtgcgtgtaccctggcaggggcttctgctc
acagcctcacttctaaccttctggaacccgcccaccactgcccagctcactactgaatcc
atgccattcaatgttgcagaggggaaggaggttcttctccttgtccacaatctgccccag
caactttttggctacagctggtacaaaggggaaagagtggatggcaaccgtcaaattgta
ggatatgcaataggaactcaacaagctaccccagggcccgcaaacagcggtcgagagaca
atataccccaatgcatccctgctgatccagaacgtcacccagaatgacacaggattctac
accctacaagtcataaagtcagatcttgtgaatgaagaagcaactggacagttccatgta
tacccggagctgcccaagccctccatctccagcaacaactccaaccctgtggaggacaag
gatgctgtggccttcacctgtgaacctgagactcaggacacaacctacctgtggtggata
aacaatcagagcctcccggtcagtcccaggctgcagctgtccaatggcaacaggaccctc
actctactcagtgtcacaaggaatgacacaggaccctatgagtgtgaaatacagaaccca
gtgagtgcgaaccgcagtgacccagtcaccttgaatgtcacctacacctattaccgtcca
ggggcaaacctcagcctctcctgctatgcagcctctaacccacctgcacagtactcctgg
cttatcaatggaacattccagcaaagcacacaagagctctttatccctaacatcactgtg
aataatagtggatcctatacctgccacgccaataactcagtcactggctgcaacaggacc
acagtcaagacgatcatagtcactgagctaagtccagtagtagcaaagccccaaatcaaa
gccagcaagaccacagtcacaggagataaggactctgtgaacctgacctgctccacaaat
gacactggaatctccatccgttggttcttcaaaaaccagagtctcccgtcctcggagagg
atgaagctgtcccagggcaacaccaccctcagcataaaccctgtcaagagggaggatgct
gggacgtattggtgtgaggtcttcaacccaatcagtaagaaccaaagcgaccccatcatg
ctgaacgtaaactataatgctctaccacaagaaaatggcctctcacctggggccattgct
ggcattgtgattggagtagtggccctggttgctctgatagcagtagccctggcatgtttt
ctgcatttcgggaagaccggcagggcaagcgaccagcgtgatctcacagagcacaaaccc
tcagtctccaaccacactcaggaccactccaatgacccacctaacaaggacaccattgga
gacaatggttcttttatgaaggctttgactggaatggcatgccagctcaaagtgaaaaag
agaatacaaatatccctgatggtcctttgtgcggtcacagctggacccggtatgtcctcc
cggttaatccagggtgctcagggctcccatttcactctgaacgtcctctctcctatcgga
gctcaccacgtctacacctgcagcagccaggggtcgccagaggccacagggaccgaggcc
aggcttctaggagatggctccaggaaggcggccaagaatgtgagtgcaaagtggaaatgc
aaggcacagaagatggcgattaaagctctgtcctactccctcctatcaaatgtattaact
ctcccatctaagcagcaatgctgttgttccagattggttcctgagagccccgagaagaaa
attcatgacagtgtctgggctgccaaagaagcagtgcccctgtga

>gi568815579r:42385076_42585714|GENSCAN_predicted_peptide_4|202_aa
XTLVELEDIMLSKLTQKQKNKYCMFSLIKKNAPGLPVGAFTGIVTRVLVGVAPVATLACF
LLLVRTGRPRYPTPGQPLPSMRHHSRQHMDGKRLREKLPVLVRSEAAIKNCWRLGAHISL
STCLTAKAISHLLPSTLPNPVHGGDGPSWNTHHSLSAFSGNHRFYRGHLWNQNSWKDEQR
ELLRTSWGSWHLVHHMDIINST

>gi568815579r:42385076_42585714|GENSCAN_predicted_CDS_4|609_bp
ngaacattggtggagctagaggacattatgctcagcaaactaacgcagaaacagaaaaac
aaatactgcatgttctcacttataaaaaaaaatgccccaggccttcctgtgggggccttc
actggcatcgtgaccagggttctggtcggggtggcaccggtggccaccctggcatgtttc
ctgctcctcgtcaggactggaaggccccgctacccgaccccaggacagccgctcccatct
atgaggcatcacagcaggcagcacatggatggaaagagactgcgggaaaagctgcctgta
ttagtccgttccgaagctgctataaagaactgctggagactgggagcccacatcagcctg
tccacctgccttacagccaaagccatcagccacttgctcccttccaccctccccaaccct
gtacatggaggtgacggcccctcctggaacacccaccactcactgtcagccttcagtggt
aatcacaggttctacaggggtcacctgtggaaccagaactcttggaaggacgagcagagg
gagctgctcaggacatcttggggctcctggcatctggtccaccacatggacataatcaat
agcacttag