GENSCAN 1.0	Date run:  3-Nov-116	Time: 17:13:29

Sequence gi568815579f:29842610_30115066 : 272457 bp : 44.42% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Term +   2894   3034  141  1  0   84   49    99 0.648   3.53
 1.02 PlyA +   4451   4456    6                               1.05

 2.09 PlyA -   9222   9217    6                               1.05
 2.08 Term -  15843  15833   11  1  2  142   44    -8 0.248  -1.44
 2.07 Intr -  19321  19205  117  2  0   54   65   114 0.367   6.14
 2.06 Intr -  31089  31020   70  0  1   80    3    43 0.083  -6.25
 2.05 Intr -  31497  31399   99  0  0  112   74    30 0.517   4.31
 2.04 Intr -  32091  31908  184  2  1   58   82    81 0.331   4.29
 2.03 Intr -  33982  33831  152  1  2   96   49    75 0.166   3.36
 2.02 Intr -  40548  40421  128  1  2   78   60    56 0.038   2.20
 2.01 Init -  59260  59017  244  1  1   72   53   158 0.043   8.70
 2.00 Prom -  61177  61138   40                              -5.16

 3.00 Prom +  78084  78123   40                              -3.76
 3.01 Sngl +  78573  79043  471  2  0   59   48   547 0.961  43.92
 3.02 PlyA +  79546  79551    6                               1.05

 4.00 Prom +  85915  85954   40                              -5.86
 4.01 Init +  99939 100055  117  2  0   98   88   161 0.841  16.82
 4.02 Term + 100214 100237   24  1  0  105   55    39 0.938   0.52
 4.03 PlyA + 100680 100685    6                               1.05

 5.03 PlyA - 100782 100777    6                               1.05
 5.02 Term - 114007 113761  247  0  1   27   41   192 0.565   3.66
 5.01 Init - 114379 114102  278  1  2   65   58   233 0.563  14.46
 5.00 Prom - 123849 123810   40                              -4.66

 6.00 Prom + 132330 132369   40                              -4.66
 6.01 Init + 133875 133933   59  2  2   70   81    24 0.138   0.68
 6.02 Intr + 142614 142692   79  0  1   82   80    32 0.182   1.35
 6.03 Intr + 143673 143808  136  2  1   68   61    94 0.215   4.84
 6.04 Intr + 162752 162843   92  0  2   76   76    32 0.108   0.51
 6.05 Intr + 163042 163099   58  0  1   58  121    83 0.999   7.06
 6.06 Intr + 164861 165029  169  0  1   85   48   164 0.996  11.10
 6.07 Intr + 166396 166687  292  1  1   57  -25   464 0.615  29.14
 6.08 Intr + 168485 168627  143  1  2   58   75    94 0.995   4.25
 6.09 Intr + 169676 169922  247  2  1   26   85   134 0.961   4.36
 6.10 Term + 172278 172460  183  2  0   88   47   110 0.996   4.44
 6.11 PlyA + 173285 173290    6                               1.05

 7.00 Prom + 184837 184876   40                              -5.76
 7.01 Init + 194829 195148  320  2  2  102   29   188 0.623  11.12
 7.02 Term + 195365 195458   94  2  1   92   36    87 0.726   1.20
 7.03 PlyA + 197439 197444    6                               1.05

 8.00 Prom + 198646 198685   40                              -4.46
 8.01 Init + 199063 199217  155  0  2   53   47   136 0.278   5.46
 8.02 Intr + 208431 208489   59  0  2  107   81    47 0.037   4.43
 8.03 Intr + 222522 222680  159  1  0   71   72    44 0.038   1.06
 8.04 Intr + 223382 223447   66  0  0   71  110    44 0.085   3.78
 8.05 Intr + 228726 228874  149  1  2   74   94    76 0.402   6.75
 8.06 Term + 231869 231931   63  1  0  122   50    18 0.260  -0.71
 8.07 PlyA + 234060 234065    6                               1.05

 9.05 PlyA - 236347 236342    6                               1.05
 9.04 Term - 236833 236705  129  1  0   54   46    67 0.060  -2.72
 9.03 Intr - 241953 241770  184  2  1   51   61   173 0.672  10.69
 9.02 Intr - 246276 246143  134  0  2   68   94    16 0.017  -0.36
 9.01 Init - 259789 259595  195  1  0   75   50    96 0.034   3.43
 9.00 Prom - 260333 260294   40                              -4.46

10.00 Prom + 261114 261153   40                              -5.36
10.01 Init + 262400 262841  442  1  1   71   66   258 0.603  18.15
10.02 Term + 263095 263168   74  2  2  120   44    14 0.237  -1.73
10.03 PlyA + 266236 266241    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 209026 208853  174  1  0   18   49   206 0.825   7.46


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815579f:29842610_30115066|GENSCAN_predicted_peptide_1|46_aa
VLTPTCMRMILIVLTVAKLFSTCFLNIDAVWTPDSHIFTPPRSPLL

>gi568815579f:29842610_30115066|GENSCAN_predicted_CDS_1|141_bp
gttttaacgcctacctgcatgcggatgatcctgatagttctaacagtagctaaactgttt
tccacgtgctttctgaacattgatgctgtttggacccctgacagccacatttttacgccc
ccgcgcagcccgctgctctga

>gi568815579f:29842610_30115066|GENSCAN_predicted_peptide_2|334_aa
MKRSRCRDRPQPPPPDRREDAVQRAAELSQSLPPRRRAPPGRQRLEERTGPAGPEGKEQP
PALASQSAEIAASARLPPRLGTPGPPGSWEPQRDGSRGQPLWMDPLLGILNSKHQPHICK
QSLQQHNNGVECVGAPLPLDHLGEVNGTHLASSAAEKWGGYIKRKTERRVNERRRKQALP
IRQEDMGGDLKVWGQLWESLHTGRELTNLLELRGKTPGNNDVGGTVSRVAEPSVHQDPQP
ASSEVNSVTVCKYGCRQIAASCPQPRASGMPGRRHQMAADALRSSGREGAGPGISRKDSV
SLELLGLQLEEHLQDNEANIMKSKAQEEVGCGLT

>gi568815579f:29842610_30115066|GENSCAN_predicted_CDS_2|1005_bp
atgaagcggagccgctgccgcgaccgaccgcagccgccgccgcccgaccgccgggaggat
gcagttcagcgggcagcggagctgtctcagtctttgccgccgcgccggcgagcgccgccc
gggaggcagcggctggaggagcggacgggccccgcggggcccgagggcaaggagcagccg
cctgccttggcctcccaaagtgccgagattgcagcctctgcccggctgccaccccgtctg
ggaactccaggccctcctggctcctgggagccacagagagatggctcccgtgggcagccg
ctgtggatggatcctttattgggcatcttgaattccaagcaccagccccacatttgcaag
cagagcctccagcaacacaacaacggtgtagagtgcgtgggggccccactgccactggac
cacttgggagaggtgaatggtactcacctcgcctcttctgcagcagagaagtggggagga
tatatcaagaggaaaacagagaggagagtcaatgagagacggaggaaacaggccttgcct
ataaggcaggaggatatggggggagacctcaaggtttgggggcagctgtgggagtctctg
cacactggcagagaattaactaacctcttggagcttagagggaaaaccccggggaacaat
gatgtcgggggcacggtcagcagagtggccgagccatctgtacaccaggacccgcagcca
gccagctctgaggttaattctgtgacagtgtgcaaatacggctgccgccaaatcgcagcc
tcgtgcccgcagcctcgcgcctcagggatgcccgggcgccgccaccagatggcagcagac
gctttgcgatcgagcggccgggagggcgcggggccggggatttctcgcaaggacagtgta
agcctggagctgctggggctacaactggaagaacacttgcaggataacgaagccaatata
atgaaaagcaaagcccaggaagaggtggggtgtggtctcacttaa

>gi568815579f:29842610_30115066|GENSCAN_predicted_peptide_3|156_aa
MVNPTKFFNEPWGRISIQLFADKFPKTAENVCALSIGEKGFGYKGSCFHRIIPGFMCHGG
DFTHHNGSGGKYIYGEKFDDENFILKQTGSGILSKENAGPNTNGSQFFICSAKSEWLDGE
HVFFGKVKEGMNIVEAMEGFGSRNGKTSKKITIADC

>gi568815579f:29842610_30115066|GENSCAN_predicted_CDS_3|471_bp
atggtcaaccccaccaagttcttcaatgagccctggggccgcatctccatccagctgttt
gcagacaagtttccaaagacagcagaaaatgtttgtgctctgagcattggagagaaagga
tttggttataagggttcctgctttcacagaattattccggggtttatgtgtcacggtggt
gacttcacacaccataatggcagtggtggcaagtacatctatggggagaaatttgatgat
gagaacttcatcctgaagcagacaggttctggcatcttgtccaaggaaaatgctggaccc
aacacaaacggttcccagtttttcatctgcagtgccaagagtgagtggttggatggtgag
catgtgttctttggcaaggtgaaagaaggcatgaatattgtggaggccatggagggtttt
gggtccaggaatggcaagaccagcaagaagatcaccattgctgactgttga

>gi568815579f:29842610_30115066|GENSCAN_predicted_peptide_4|46_aa
MEAPTVETPPDPSPPSAPAPALVPLRAPDVARLREEQEKPFDFAAE

>gi568815579f:29842610_30115066|GENSCAN_predicted_CDS_4|141_bp
atggaggcgcccaccgtggagacgccccccgacccctcgcccccttcggccccggcccct
gccctggttccgttgcgcgccccggatgtggcgcggctgcgcgaggagcaggaaaagccc
tttgacttcgcagcggagtga

>gi568815579f:29842610_30115066|GENSCAN_predicted_peptide_5|174_aa
MKTILSNQTVDIPENVNVTLKGRTVIIKGPRGTLRKDFNHINVELRLLGKKKKRLRVDKW
SGNRKELATVRTICSHVQNMIKGVTLGFHYKMRVQMRPGVACSVPQAQKDELILEGNDTE
LVSNSAALIQQPTTVKNKDIRKFLDGIYVSEKGTVQQVDESDLRVIQLQKEDAR

>gi568815579f:29842610_30115066|GENSCAN_predicted_CDS_5|525_bp
atgaagaccattctcagcaatcagactgttgacattccagaaaatgtcaacgttactctg
aagggacgcacagttatcataaagggccccagaggaaccctgcggaaggacttcaatcac
atcaacgtagaactcagactccttggaaagaaaaaaaagaggctccgggttgacaaatgg
tcgggtaacagaaaggaactggctaccgttcggactatttgtagtcatgtacagaacatg
atcaagggtgttacactgggcttccattacaagatgagggttcagatgagaccaggtgtt
gcctgttcagtacctcaagcccagaaagatgaattaatccttgaaggaaatgacactgag
cttgtttcaaattcagcagctttgattcagcaacccacaacagttaaaaacaaggatatc
aggaaatttttggatggtatctatgtctctgaaaaaggaactgttcagcaggttgatgaa
tcagatctaagagttatccagctacagaaagaagatgccagatga

>gi568815579f:29842610_30115066|GENSCAN_predicted_peptide_6|485_aa
MEAARPRYVGQRKGQRRFTRKKVDNDYNALRERLSTLPDKLSYNIMVPFGPFAFMPGKLV
HTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDLQKM
SDAAGDIVDIREEIKCDFEFKAKHRIAHKPHSKPKTSDIFEADIANDVKSKDLLADKELW
ARLEELERQEELLGELDSKPDTVIANGEDTTSSEEEKEDRNTNVNAMHQVTDSHTPCHKD
VASSEPFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDDDNIDDDDGDNDHEALGVRINT
GKNTTLKFSEKKEEAKRKRKNSTGSGHSAQELPTIRTPADIYRAFVDVVNGEYVPRKSIL
KSRSRENSVCSDTSESSAAEFDDRRGVLRSISCEEATCSDTSESILEEEPQENQKKLLPL
SVTPEAFSGTVIEKEFVSPSLTPPPAIAHPALPTIPERKEVLLEASEETGKRVSKFKAAR
LQQKD

>gi568815579f:29842610_30115066|GENSCAN_predicted_CDS_6|1458_bp
atggaagctgcaaggccacgttatgttggtcaaaggaagggccagcgcagattcacaagg
aagaaggtagataatgactataatgcccttcgagaaagactcagcaccttgcctgataaa
ttgtcttataatataatggtaccatttggcccttttgccttcatgccaggaaaacttgtc
catactaatgaagtcactgttttactgggggacaactggtttgcaaagtgctcagcaaag
caggctgtaggtttagttgagcaccggaaagaacatgtaagaaaaacaatagatgactta
aaaaaagtgatgaaaaattttgaatccagagttgaattcacagaagatttgcagaaaatg
agcgatgctgcaggtgatattgttgacatacgagaagaaattaaatgtgacttcgaattt
aaagcaaaacaccgaattgctcataaaccgcattccaaaccaaaaacttcagatattttt
gaagcagatattgcaaatgatgtgaaatccaaggatttgctagctgataaagaactgtgg
gctcgacttgaagaactagagagacaggaagaattgctgggtgaacttgatagtaagcct
gatactgtgattgcaaatggagaagatacgacatcttctgaagaggaaaaggaagatcgt
aacacaaatgtgaatgcgatgcatcaagtaacagactctcatactccttgtcataaggat
gttgcaagttcagaaccattcagtggtcaagtgaatagtcagttgaactgttcagtgaat
ggttccagttcttaccacagtgatgatgatgatgatgatgatgatgacgacgacgacgac
aacattgacgacgatgatggtgataacgaccatgaggctttaggggtccgaataaatact
ggaaagaataccactttaaaattcagtgaaaagaaagaagaagccaaacgtaaacgaaag
aacagcactggcagtggccactctgcccaggagctgccgaccatcaggacgcctgcagac
atttacagagcctttgttgatgttgtgaatggagaatatgtccctcgcaaatccatcctg
aagtctcgaagtagagagaatagtgtgtgtagcgacactagtgaaagcagtgctgctgaa
tttgatgataggcggggagttttgaggagtatcagctgcgaagaagccacttgcagtgac
accagtgagagcattttggaagaggaaccacaagaaaatcaaaagaaacttttgccctta
tcagtaacacctgaggctttttctggaactgttatagaaaaagaatttgtatcaccttcc
ttaacaccacccccagccattgctcatcccgcactacccactattccagaacgaaaggaa
gttctgttggaagcatctgaagaaactggaaagagggtttcaaagtttaaagctgccaga
ttgcaacagaaagactag

>gi568815579f:29842610_30115066|GENSCAN_predicted_peptide_7|137_aa
MASPKSMPKDAQMMAQILKDLGITEYEPRLINQMLEFAFRYVTTILDDAKIYSSHAKKAT
VDADDVQLAIQFHADQSFTSLPPRDFFIRYRKAKKSNPFSINQAIFRAKVYSTDAYFTVS
SCKIFNSCNISSSECSD

>gi568815579f:29842610_30115066|GENSCAN_predicted_CDS_7|414_bp
atggcttctcccaagagcatgccgaaagatgcacagatgatggcacaaatcctgaaggat
ctgggaattacagaatatgagccaagacttataaatcagatgttagagtttgccttccgt
tatgtgaccacaattctagatgatgcaaaaatttactccagccatgctaagaaagctacc
gttgatgcagatgatgtgcagttggcaatccagttccacgctgaccagtcttttacctct
cttcccccaagagatttttttattagatatcgcaaggcaaagaaatcaaaccccttttcc
attaatcaagccatattcagggcaaaggtttacagtacagatgcctacttcacagtctcc
agctgtaaaatcttcaattcctgcaacatcagcagttcagaatgttctgattaa

>gi568815579f:29842610_30115066|GENSCAN_predicted_peptide_8|216_aa
MWEGLELPRELLNGFDKNTDKGVDNEIQADVVSDGDEELGNWSKGDSCYVLVNQHRTTQK
AVWLRCNAAFGKAPAKPIRSCDIPQACMEPFCVPVLCVPRGTKAWFLDSGASRLGREVDV
EQEMATTSSSSYHLSNPRTIAPIKVTGQCPAARGEGGDLVPPIWHRGGQGIWTAAIGEVP
TPGPGFGPSMSLGRRWAVPCLSSAQWEQGMLTLDEL

>gi568815579f:29842610_30115066|GENSCAN_predicted_CDS_8|651_bp
atgtgggaaggtttggaacttcctagagaattgttgaatggctttgacaaaaatactgat
aaaggtgtggacaatgaaatccaggctgacgtggtctcagatggagatgaagaacttggg
aactggagcaaaggcgactcttgttatgttttagtaaatcagcacagaaccacgcagaag
gcagtgtggctgcggtgcaatgctgcatttggaaaagctcctgcaaaaccaatcaggagc
tgtgacatccctcaagcttgcatggaacccttctgtgtgccagtgctgtgtgtgccccgg
ggcaccaaggcctggtttttggactctggggcctcacgtctaggaagggaggtggatgtg
gaacaggaaatggcaactaccagcagcagctcctatcatcttagcaacccaaggacaatt
gctcctataaaagtcacaggtcagtgcccggctgctagaggggagggaggggatctcgtg
cccccgatctggcaccggggtgggcagggcatatggacggcagccattggcgaggtgccc
acaccaggccctggcttcgggcccagcatgagcctgggccggcggtgggcagttccctgc
ctctcctcagcacagtgggaacaagggatgctgactctagatgagctctag

>gi568815579f:29842610_30115066|GENSCAN_predicted_peptide_9|213_aa
MSPGHTCLYKNDCRRIDHLGSGGTAGPDIAQSVAPQILLSELRASKFSPVSLNSEPELGD
RFVAIVIDWTQGLLQHLWPNGNNSGHHSQGASSVLGTGMHYVIQTLTPARGSPGNVESLT
TGRQTLTGSFANATQITANANLAMVQTPRSNFLSVPAHSPPKVTDKIEFDTPLEDVHHQN
KGVNQERARGSLWNRDGKGDLQAETEGRHRESS

>gi568815579f:29842610_30115066|GENSCAN_predicted_CDS_9|642_bp
atgtccccaggccacacctgcctctacaagaatgactgcagaagaattgatcaccttggt
agcggtggaactgcagggccagacattgcccaaagtgtggccccacagatcctactttct
gagcttagagcctccaagttcagtcctgtctctctgaactcagagcctgagctaggagac
agattcgtggccatcgtaattgattggactcagggacttctccaacatctctggcccaat
ggtaacaacagtggccaccattcacagggtgcttcctctgtcctgggcactggtatgcat
tacgtcatccaaaccctcacaccagccagagggagcccagggaatgtggaaagtttaacg
acaggcaggcagaccctgactggcagcttcgccaatgcaacccagataacggcaaacgca
aacctcgccatggtccagacacctcgctccaacttcctctccgtgccagcacatagcccg
ccaaaggtcacggacaagatagaatttgacacaccactggaggatgtgcaccaccaaaac
aaaggtgtaaaccaagaaagagcaagaggtagcttatggaacagagatggcaaaggcgat
ttgcaggctgagactgaaggaagacaccgggagagcagctga

>gi568815579f:29842610_30115066|GENSCAN_predicted_peptide_10|171_aa
MGPADTPVSMELCVVGTGPGDTPVSMELCVVGTGPGDTPVSMELCVLGTGPSDTPVSMEL
CVVGTGPGDTAVFIELCMVGTGPGDTPVFMELCMVGMGPRDTPASMELCVVAMAMGSGHS
VVLGDSAATVPFGLWISSPVGQQAQCPGPPRNSDSGVRFGGQSSVASSGPL

>gi568815579f:29842610_30115066|GENSCAN_predicted_CDS_10|516_bp
atgggccctgcggacacccctgtatccatggagctctgtgtggtggggacgggtcctggt
gacactcctgtgtccatggagctctgtgtggtggggacgggtcctggtgacactcctgtg
tccatggagctctgtgtgttggggacgggacctagtgacactcctgtgtccatggaactc
tgtgtggtggggacaggtcctggtgacaccgctgtgttcattgagctctgtatggtgggg
acgggtcctggtgacacccctgtgttcatggagctctgtatggtggggatgggtcctcgt
gacactcctgcgtccatggagctctgtgttgtggccatggccatgggttctggtcactct
gtggtactgggagactcagcagccactgtgccttttggactctggatctccagtcctgtg
ggacagcaagcccaatgcccaggtcctcctcgaaactctgactctggagtaaggtttggt
ggacagagctctgttgcctcctcaggcccattgtga