GENSCAN 1.0	Date run:  5-Nov-116	Time: 17:20:05

Sequence gi568815578r:3834066_4064017 : 229952 bp : 44.97% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  20560  20676  117  0  0   91   99    57 0.994   7.30
 1.02 Intr +  23570  23744  175  1  1   58   54   190 0.982  12.11
 1.03 Intr +  27267  27439  173  1  2  112   58    90 0.999   8.06
 1.04 Intr +  28189  28348  160  0  1   98   85   137 0.989  13.96
 1.05 Intr +  30359  30723  365  0  2  105  105   256 0.894  23.90
 1.06 Intr +  31618  31974  357  0  0   94   35   338 0.512  24.55
 1.07 Intr +  32327  32498  172  1  1   61   91    33 0.392   0.42
 1.08 Intr +  32788  32922  135  2  0  107   79    31 0.535   4.64
 1.09 Term +  39862  39989  128  2  2   41   45   115 0.433   0.94
 1.10 PlyA +  40315  40320    6                               1.05

 2.00 Prom +  41356  41395   40                              -4.66
 2.01 Init +  54774  54951  178  2  1   84   27   224 0.914  13.35
 2.02 Intr +  55256  55663  408  0  0   37   96   234 0.883  13.34
 2.03 Intr +  73861  74213  353  2  2   77   19   294 0.974  16.44
 2.04 Intr +  76512  76765  254  2  2   87   97   146 0.957  11.63
 2.05 Intr +  78393  78569  177  0  0   40  116    81 0.928   5.13
 2.06 Intr +  82862  82985  124  2  1   54   72   113 0.983   6.89
 2.07 Intr +  84606  84731  126  2  0   72   99   100 0.996  10.38
 2.08 Intr +  88719  88884  166  2  1   99   78   -12 0.264  -1.57
 2.09 Intr +  91881  91940   60  1  0   65   94    31 0.067   0.11
 2.10 Term +  97431  97525   95  1  2   55   40   127 0.217   2.59
 2.11 PlyA +  98001  98006    6                              -0.45

 3.06 PlyA -  98242  98237    6                              -0.45
 3.05 Term - 100030  99906  125  2  2   45   48    68 0.299  -2.95
 3.04 Intr - 100285 100057  229  1  1  135   72    98 0.360  10.34
 3.03 Intr - 111153 111112   42  0  0   98  107    17 0.545   3.04
 3.02 Intr - 149066 149020   47  0  2   55   77    62 0.012  -0.07
 3.01 Init - 181555 181372  184  1  1   24   91   189 0.973  10.08
 3.00 Prom - 189449 189410   40                              -4.76

 4.00 Prom + 189629 189668   40                             -12.78
 4.01 Sngl + 189852 190379  528  2  0   90   48   818 0.962  74.06
 4.02 PlyA + 190629 190634    6                               1.05

 5.04 PlyA - 192498 192493    6                               1.05
 5.03 Term - 212083 212016   68  2  2   46   41   109 0.201   0.10
 5.02 Intr - 223487 223321  167  1  2   -4   92   122 0.024   3.00
 5.01 Init - 225896 225565  332  2  2   64    4   194 0.058   5.39

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578r:3834066_4064017|GENSCAN_predicted_peptide_1|593_aa
MPFAEDKTYKYICRNFSNFCNVDVVEILPYLPCLTARDQDRLRATCTLSGNRDTLWHLFN
TLQRRPGWVEYFIAALRGCELVDLADEVASVYQSYQPRTSDRPPDPLEPPSLPAERPGPP
TPAAAHSIPYNSCREKEPSYPMPVQETQAPESPGENSEQALQTLSPRAIPRNPDGGPLES
SSDLAALSPLTSSGHQEQDTELGSTHTAGAAEGKQGAESDQAEPIICSSGAEAPANSLPS
KVPTTLMPVNTVALKVPANPASVSTVPSKLPTSSKPPGAVPSNALTNPAPSKLPINSTRA
GMVPSKVPTSMVLTKVSASTVPTDGSSRNEETPAAPTPAGATGGSSAWLDSSSENRGLGS
ELSKPGVLASQVDSPFSGCFEDLAISASTSLGMGPCHGPEENEYKSEGTFGIHVAENPSI
QLLEGNPGPPADPDGGPRPQADRKFQERECSRPSPLAIQVIIHVLQRSFLLQASALLAQV
EQEGPLEHVVLGNASPVALVPEGLRAAPYMGWGGDTWWAELRQRFGFQLPHFRGCVALAD
VRLLVLLLHVDKSYVHRDIGKNVSNHTLTVAPNLKQPKCPSTNPNVHPQLKLQ

>gi568815578r:3834066_4064017|GENSCAN_predicted_CDS_1|1782_bp
atgccgtttgctgaagacaagacctataagtatatctgccgcaatttcagcaatttttgc
aatgtggatgttgtagagattctgccttacctgccctgcctcacagcaagagaccaggat
cgactgcgggccacctgcacactctcagggaaccgggacaccctctggcatctcttcaat
acccttcagcggcggcccggctgggtggagtacttcattgcggcactgaggggctgtgag
ctagttgatctcgcggacgaagtggcctctgtctaccagagctaccagcctcggacctcg
gaccgtcccccagacccactggagccaccgtcacttcctgctgagaggccagggcccccc
acacctgctgcggcccacagcatcccctacaacagctgcagagagaaggagccaagttac
cccatgcctgtccaggagacccaggcgccagagtccccaggagagaattcagagcaagcc
ctgcagacgctcagccccagagccatcccaaggaatccagatggtggccccctggagtcc
tcctctgacctggcagccctcagccctctgacctccagcgggcatcaggagcaggacaca
gaactgggcagtacccacacagcaggggctgcagagggtaaacagggtgcagagagtgac
caggccgagcctatcatctgctccagtggggcagaggcacctgccaactctctgccctcc
aaagtgcctaccaccttgatgcctgtgaacacagtggccctgaaagtgcctgccaaccca
gcatctgtcagcacagtgccctccaagttgccaactagctcaaagccccctggtgcagtg
ccttctaatgcgctcaccaatccagcaccatccaaattgcccatcaactcaacccgtgct
ggcatggtgccatccaaagtgcctactagcatggtgctcaccaaggtgtctgccagcaca
gtccccactgacgggagcagcagaaatgaggagaccccagcagctccaacacccgccggc
gccactggaggcagctcagcctggctagacagcagctctgagaataggggccttgggtcg
gagctgagtaagcctggcgtgctggcatcccaggtagacagcccgttctcgggctgcttc
gaggatcttgccatcagtgccagcacctccttgggcatggggccctgccatggcccagag
gagaatgagtataagtccgagggcacctttgggatccacgtggctgagaaccccagcatc
cagctcctggagggcaaccctgggccacctgcggacccggatggcggccccaggccacaa
gccgaccggaagttccaggagagggagtgctccagaccttccccactggcaatccaggtt
atcatccatgtcctccagaggagcttcctcctccaggcctcagccctgttggcccaggtg
gagcaggagggaccactggaacatgtggtgcttgggaatgcctctcctgttgcattggtc
cctgaaggcctcagggcagctccctacatgggctggggaggagacacctggtgggcagag
ctcaggcagaggtttggatttcagctccctcacttccggggctgtgtggctttggcagat
gtcagacttctggtcttgcttctccacgtggacaaaagctatgtccaccgagacattggc
aagaatgtttctaaccacacgctgactgtagccccaaacctgaaacaacccaaatgtcca
tccaccaacccaaatgtccatccacagttgaagctacagtga

>gi568815578r:3834066_4064017|GENSCAN_predicted_peptide_2|646_aa
MLGEGLAASTAAAELGRGTKAKVSRGSSPFVCRRPAARRCGSTAGLEEGSSCEDGTEQRA
SSDWLPARWRNGRGGRPRARLCSGWTAAEEARRNPTLGGLLGRQRLLLRMGGGRLGAPME
RHGRASATSVSSAGEQAAGDPEGRRQEPLRRRASSASVPAVGASAEGTRRDRLGSYSGPT
SVSRQRVESLRKKRPLFPWFGLDIGGTLVKLVYFEPKDITAEEEEEEVESLKSIRKYLTS
NVAYGSTGIRDVHLELKDLTLCGRKGNLHFIRFPTHDMPAFIQMGRDKNFSSLHTVFCAT
GGGAYKFEQDFLTIGDLQLCKLDELDCLIKGILYIDSVGFNGRSQCYYFENPADSEKCQK
LPFDLKNPYPLLLVNIGSGVSILAVYSKDNYKRVTGTSLGGGTFFGLCCLLTGCTTFEEA
LEMASRGDSTKVDKLVRDIYGGDYERFGLPGWAVASSFGNMMSKEKREAVSKEDLARATL
ITITNNIGSIARMCALNENINQVVFVGNFLRINTIAMRLLAYALDYWSKGQLKALFSEHE
LSRALTLCDPPHNFTCFIALCIRPRLHSLVVWKCSRPLLLLTSFPRNSQVLSLTRAVPFS
LPSTSGHEGGCDRGPAMQMRRPILVEDPDAGSKYSGCVAKSRRNYC

>gi568815578r:3834066_4064017|GENSCAN_predicted_CDS_2|1941_bp
atgctgggggaggggctggcggcctcgacggcagctgcggaactaggccgagggacaaag
gctaaggtcagccgcggttcaagccctttcgtctgccgacgaccagcggccagacgctgc
gggagcactgctgggctggaggagggctcgagctgcgaggacggcacggagcagcgggcc
tcgtcggattggcttcctgcgcgttggcgcaacggaagaggcggccggccgagggcgcgc
ctctgctctggctggactgccgcggaggaggcgagaaggaatccgacgctggggggcttg
ctcgggcggcagcgactgctgctgcggatgggagggggccggctcggcgcgcccatggag
cgccacggcagggcttccgccacctccgtctcgtcggctggggagcaggcggccggggac
cccgaagggcggcggcaggagccactgcggcgccgggcgagcagcgcgtcggtgcccgcg
gtcggggcctcggctgagggcacgaggcgggatcgactgggctcttacagcggccccacc
tcggtctcccgccagcgcgtcgaaagcctgaggaaaaagcggccgctttttccatggttt
ggactggatatcggtggaactctggtcaagctggtatattttgaacccaaagacatcact
gctgaagaagaagaggaagaagtggaaagtcttaaaagcattcggaagtacctgacctcc
aatgtggcttatgggtctacaggcattcgggacgtgcacctcgagctgaaggacctgact
ctgtgtggacgcaaaggcaatctgcactttatacgctttcccactcatgacatgcctgct
tttattcaaatgggcagagataaaaacttctcgagtctccacactgtcttttgtgccact
ggaggtggagcgtacaaatttgagcaggattttctcacaataggtgatcttcagctttgc
aaactggatgaactagattgcttgatcaaaggaattttatacattgactcagtcggattc
aatggacggtcacagtgctattactttgaaaaccctgctgattctgaaaagtgtcagaag
ttaccatttgatttgaaaaatccgtatcctctgcttctggtgaacattggctcaggggtt
agcatcttagcagtatattccaaagataattacaaacgggtcacaggtactagtcttgga
ggaggaactttttttggtctctgctgtcttcttactggctgtaccacttttgaagaagct
cttgaaatggcatctcgtggagatagcaccaaagtggataaactagtacgagatatttat
ggaggggactatgagaggtttggactgccaggctgggctgtggcttcaagctttggaaac
atgatgagcaaggagaagcgagaggctgtcagtaaagaggacctggccagagcgactttg
atcaccatcaccaacaacattggctcaatagcaagaatgtgtgcccttaatgaaaacatt
aaccaggtggtatttgttggaaatttcttgagaattaatacgatcgccatgcggcttttg
gcatatgctttggattattggtccaaggggcagttgaaagcacttttttcggaacacgag
ctcagtcgggctctcaccctctgtgacccacctcacaacttcacctgtttcattgcactt
tgcatccgacctcgccttcattccttagttgtctggaaatgctccaggcctctgctgctt
ctcacctcattccccagaaacagtcaggttctgtctcttaccagagctgtccctttcagt
ctgccctccactagtggccatgaagggggctgtgaccgtggtccagcaatgcagatgcgc
aggcccatcctggtggaggacccagatgcagggagcaaatattcgggttgtgttgctaag
agtcgcaggaactactgctag

>gi568815578r:3834066_4064017|GENSCAN_predicted_peptide_3|208_aa
MRGAAPAPPPAGPPLARGRRAQSAAATSAALCPDGRSPPAACRPPQGADGPARLPLPPAR
PILEAKKFKIKILASGKVILKEKVKELNLHEGVTSVHHLGGELLGPYSRRCLGDRYGDVQ
QNSRAMSIGLTSSPCGVSFCRCLIKWLEVRKVCPLCNMPVLQLAQLHRAPSWGREHCIAY
RKDQTVAGHDVCVEPGGTHVVSVWLLST

>gi568815578r:3834066_4064017|GENSCAN_predicted_CDS_3|627_bp
atgagaggcgcggcgcccgcccctcccccggcgggcccgcccctcgcgaggggccgccgg
gcgcagtcagccgccgccacctccgccgcgctctgtccggacggacgctcgccgcccgca
gcctgccgcccgccgcagggcgctgacggtcccgcacgtctgccgctgccaccggcgcgc
ccgattctagaagccaagaagttcaagatcaagatactggcatctggcaaggttatatta
aaagagaaagtaaaagaattgaatttacatgagggggtgacatccgttcaccacctagga
ggggagctccttggaccatacagcagacgttgtctgggtgacagatatggagatgttcag
cagaacagccgtgccatgagcataggactgacatcttccccctgtggtgtctccttctgc
aggtgccttattaagtggctggaggttcgtaaagtgtgtcccctgtgcaacatgccagtt
ctacagctggcccagttgcacagggccccttcctggggcagagaacattgtatagcttac
cgcaaggatcagactgttgctggacacgacgtctgtgtggagccaggaggaacacatgtg
gtgtctgtatggctgctctctacctag

>gi568815578r:3834066_4064017|GENSCAN_predicted_peptide_4|175_aa
MSSQIRQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDAALEGVSHFFRELTEEKR
EGYERLLKMQNQRGGRALFQDIKKPAEDEWGKTPDAMKAAMALEKKLNQALLDLHALDSA
HMDPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLGGPEAGLGEYLFERLTLKHV

>gi568815578r:3834066_4064017|GENSCAN_predicted_CDS_4|528_bp
atgagctcccagattcgtcaaaattattccaccgacgtggaggcagccgtcaacagcctg
gtcaatttgtacctgcaggcctcctacacctacctctctctgggcttctatttcgaccgc
gatgatgcggctctggaaggcgtgagccacttcttccgcgaattgaccgaggagaagcgc
gagggctacgagcgtctcctgaagatgcaaaaccagcgtggcggccgcgctctcttccag
gacatcaagaagccagctgaagatgagtggggtaaaaccccagatgccatgaaagctgcc
atggccctggagaaaaagctgaaccaggcccttttggatcttcatgccctggattctgcc
cacatggacccccatctctgtgacttcctggagactcacttcctagatgaggaagtgaag
ctcatcaagaagatgggtgaccacctgacgaacctccacaggctgggaggcccagaggct
gggctgggcgagtatctcttcgaaaggctcactctcaagcacgtctaa

>gi568815578r:3834066_4064017|GENSCAN_predicted_peptide_5|188_aa
MPLKCHHGKTGRVCNVPQHAVGIVLNKQVKGKILAKRINVHIEHRKHSKSRDGFLRRVKE
NDQTKKEVKEKGTWVQPKRQPAPPREAHFVRTNEKEPELLEPLPYEFRHNRACSEIPQRN
DAAREVGTAGMMGIGQAERPGNDPKVMGSHGRVKIREDMIGFEIKKGRSSPLSATDNAKI
LWDTFEGS

>gi568815578r:3834066_4064017|GENSCAN_predicted_CDS_5|567_bp
atgcccctcaagtgtcaccatggcaaaactggaagagtctgcaatgttccccagcatgcc
gttggcattgttctaaacaaacaagttaagggcaagattcttgccaagagaattaatgtg
catattgagcacaggaagcactctaagagccgagatggcttcctgagacgcgtgaaggaa
aatgatcagacaaagaaagaagtcaaagagaaaggcacctgggttcaaccaaagcgccag
cctgctccacccagagaagcacactttgtgagaaccaatgagaaggagcctgagctgctg
gaacctcttccctatgaattcaggcataatagggcatgcagtgagatcccccagaggaat
gatgccgccagagaggttggcacagctggaatgatgggaataggccaagctgaaagacct
ggaaatgatcctaaggtaatgggaagccatggaagagttaagatcagggaggacatgatt
ggattcgagatcaagaaagggaggtcctcacccctgtcagctacggacaatgcgaagatc
ctgtgggacacctttgaaggcagctag