GENSCAN 1.0	Date run:  6-Nov-116	Time: 12:58:26

Sequence gi568815577f:43069100_43272277 : 203178 bp : 50.93% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   5241   5631  391  0  1   67  116   186 0.256  14.03
 1.02 Intr +   7647   7719   73  2  1   57   71    81 0.608   2.28
 1.03 Intr +  10562  10790  229  0  1   59   64   202 0.777  11.83
 1.04 Term +  12449  12623  175  2  1   77   46    64 0.249  -1.67
 1.05 PlyA +  14765  14770    6                               1.05

 2.15 PlyA -  17229  17224    6                               1.05
 2.14 Term -  18972  18849  124  2  1   49   38   157 0.703   4.66
 2.13 Intr -  22064  22034   31  0  1   89  105    19 0.528   0.89
 2.12 Intr -  24150  24068   83  2  2   93   28   122 0.564   5.98
 2.11 Intr -  25464  25372   93  2  0   60   81   123 0.988   7.88
 2.10 Intr -  25689  25556  134  0  2   87   84   234 0.999  22.34
 2.09 Intr -  26437  26339   99  1  0   81   97   174 0.991  17.91
 2.08 Intr -  26644  26595   50  2  2  118   78    51 0.981   5.50
 2.07 Intr -  32333  32267   67  2  1  113   93    11 0.705   2.58
 2.06 Intr -  38046  37926  121  2  1  -18   41   154 0.518   0.60
 2.05 Intr -  38538  38352  187  1  1   42   89   222 0.755  16.45
 2.04 Intr -  40382  40167  216  0  0  113   77     4 0.339   0.28
 2.03 Intr -  45579  45538   42  1  0   90   59    64 0.453   1.91
 2.02 Intr -  45855  45740  116  2  2   91   70    -4 0.579  -1.81
 2.01 Init -  51882  50756 1127  0  2   60   53   320 0.636  19.37
 2.00 Prom -  53140  53101   40                              -4.66

 3.00 Prom +  67927  67966   40                              -5.26
 3.01 Init +  71224  71360  137  0  2   69   84   116 0.936   8.91
 3.02 Intr +  73088  73217  130  2  1   67   41    75 0.842   1.40
 3.03 Term +  74734  74814   81  0  0   96   33    96 0.776   2.59
 3.04 PlyA +  76565  76570    6                               1.05

 4.00 Prom +  83544  83583   40                              -5.66
 4.01 Init +  88361  88428   68  1  2   69   86    68 0.396   5.25
 4.02 Intr +  91672  91877  206  1  2  109   75    67 0.671   6.34
 4.03 Intr +  96807  96913  107  1  2   90   65    53 0.315   3.13
 4.04 Intr +  99911 100189  279  1  0   52   94   480 0.579  42.67
 4.05 Intr + 101418 101540  123  2  0   61   99   333 0.800  32.48
 4.06 Term + 102972 103181  210  2  0  125   47   337 0.999  30.59
 4.07 PlyA + 103682 103687    6                               1.05

 5.03 PlyA - 104729 104724    6                              -3.74
 5.02 Term - 105700 105522  179  2  2   27   42   194 0.554   6.55
 5.01 Init - 111777 111681   97  0  1  104  106    29 0.303   6.87
 5.00 Prom - 115109 115070   40                              -5.46

 6.00 Prom + 116338 116377   40                              -6.76
 6.01 Init + 116662 116699   38  0  2   59   94    36 0.398   0.78
 6.02 Intr + 117559 117663  105  1  0  101   64    73 0.614   5.53
 6.03 Intr + 122912 123903  992  2  2   34   80   412 0.813  25.50
 6.04 Intr + 125479 125537   59  2  2   64   78    82 0.713   3.40
 6.05 Term + 127021 127104   84  0  0   91   46    47 0.678  -1.55
 6.06 PlyA + 128426 128431    6                               1.05

 7.00 Prom + 132573 132612   40                              -2.46
 7.01 Init + 193368 193822  455  2  2   65   81   481 0.239  38.44
 7.02 Intr + 194575 194690  116  1  2   38   78     9 0.332  -5.01
 7.03 Intr + 194746 194829   84  2  0   85   86    56 0.084   4.89
 7.04 Intr + 200459 200637  179  0  2   56   94    51 0.073   2.14
 7.05 Term + 201824 202117  294  1  0   86   50    96 0.105   0.91
 7.06 PlyA + 202988 202993    6                              -0.45


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl -  85131  84655  477  0  0   71   43   191 0.839   7.00


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815577f:43069100_43272277|GENSCAN_predicted_peptide_1|289_aa
XLGAKAASNDPGGWCFQGLGTTDLSENPKALDLLFPRKMHPLSEVRVPRFSFYPNLVRSR
RRERSSTFLRGSRESPTGRDSPSGTGPVWPGARMLRRRIFQKAVDPRPRQTQAAQRLAFG
PSPRPGALSRKRKTRTVPISSGQRNVLRLRSVPGSEYNTYAESAHVMSGQRINRYPTGGR
AEGRGLGLHHPLVAGRLGPQNWRRLEEEEEEEEGKEEEEEGKEEEEEGKEERIFLTLKEG
HDLTIPLQKRKTSVQEQGAELGETRRRDSWAHSYPWDFVVLPRRQSAPV

>gi568815577f:43069100_43272277|GENSCAN_predicted_CDS_1|870_bp
nnactgggggccaaagcggcttcaaacgaccctggagggtggtgctttcaaggtcttggg
accacggacttgtctgaaaatccgaaggcgttggatcttctcttccccagaaaaatgcac
ccgctttcagaggttcgtgtcccacgcttttctttctatcccaaccttgtaagaagccgc
cgccgtgagcggagcagcaccttcctccgcgggtcgcgggagtcacctacgggaagggac
tctccgtctggcacaggccctgtctggcctggggcgcgcatgctccgccgccgaatcttc
cagaaagccgtggacccgaggccccggcagacgcaggcggcccagcgccttgcttttggc
ccctcgcctcgccctggagccctctctcgcaagcgaaagacacggacggtgcccatcagc
tctgggcagaggaacgtgctgcgcctccgcagcgtccccggctcagagtataacacgtat
gcagaaagtgcacatgtcatgagtggacagaggataaaccgctaccccactggggggcga
gcagaggggagaggcctgggcctgcaccatcccctggtggccggaaggctgggccctcag
aactggaggagattggaggaggaggaggaggaagaggaagggaaggaggaggaagaggaa
gggaaggaggaggaagaggaagggaaggaggagaggatcttcctaacactgaaggagggg
cacgacctgaccatccctttacagaagagaaagacgagtgtgcaggaacagggagcagag
ctgggtgagaccaggcggcgggactcctgggcccactcttacccatgggactttgtggtc
ctcccacgacgccaatcagccccagtttga

>gi568815577f:43069100_43272277|GENSCAN_predicted_peptide_2|829_aa
MSELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLKEIKEDTNKWKNIPCSCIGRINIV
KMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRTHIAKTILSQKNKAGGITLP
DFKLYYKATVTKTAWYWYQNRDIDKWNRTEPSETIPHIYNHLIFDKPDKNKKWGKDSLFN
KWCWENWLAICRKLKLDPFLTPYTKINSRWIKDLNVRPKTIKTLEENLGNTIQDIGMGKD
FMSKTPKAMATKAKIDKWDLIKLKSFCTAKETTIRVNRQPTEWEKIFAIYSSDKGLISRI
YKELKQTYKKKTNNPIKKWAKDMNRHFSKEDIYAANRHMKKCLSSLAIREMQIKTIMRYH
LTPVRMAIIKKSGNNSQINQHSYFLSRQIIFKNSDLQILGMSNLSNNKTPVARTATLSAN
RMVPTHTEGTSQLRASCQLPTLQQSLFPDRVLRLHFLDMPTCWTGICLVTSLASPLRKEH
KSQDPSSLCQKEKNELKAESCSTSPDWVALPRRGGEERRRVRVTSPEGVGRVGGVGSSVD
GSGGGGWEMAEYLASIFGTEKDNRRLPEAASSRAESCLEHPGLLDVDTFVPTFGCECPVE
QALTILIQNIYRNPQNSAQTADGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNV
CDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMG
ECTRGGFCNFMHLKPISRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGVW
VYDAVEVGRCMIHTAKYLKAKPGLKDNCKVIIVVKKQHKASIQASPPRP

>gi568815577f:43069100_43272277|GENSCAN_predicted_CDS_2|2490_bp
atgagtgaactcccattcacaattgcttcaaagagaataaaatacctaggaatccaactt
acaagagatgtgaaggacctcttcaaggagaactacaaaccactgctcaaagaaataaaa
gaggacacaaacaaatggaagaacattccatgctcatgcataggaagaatcaatatcgtg
aaaatggccatactgcccaaggtaatttatagattcaatgccatccccatcaagctacca
atgactttcttcacagaattggaaaaaactactttaaagtttatatggaaccaaaaaaga
acccacattgccaagacaatcctaagccaaaagaacaaagctggaggcatcacactacct
gacttcaaactatactacaaggctacagtaaccaaaacagcatggtactggtaccaaaac
agagatatagacaaatggaatagaacagagccctcagaaacaataccacacatctacaac
catctgatcttcgacaaacctgacaaaaacaagaaatggggaaaggattccctatttaat
aaatggtgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttcctt
acaccttatacaaaaattaattcgagatggattaaagacttaaatgttagacctaaaacc
ataaaaaccctagaagaaaacctaggcaataccattcaggacataggcatgggcaaggac
ttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatcta
attaaactaaagagcttctgcacagcaaaagagactaccatcagagtgaacaggcaacct
acagaatgggagaaaatttttgcaatctactcatctgacaaagggctaatatccagaatc
tacaaagaactcaaacaaacttacaagaaaaaaacaaacaaccccatcaaaaagtgggca
aaggatatgaacagacacttctcaaaagaagacatttatgcagccaacagacacatgaaa
aaatgcttatcatcactggccatcagagaaatgcaaatcaaaaccataatgagataccat
ctcacaccagttagaatggcgatcattaaaaagtcaggaaacaacagccagatcaatcag
cactcctacttcctgagccgccaaattatctttaaaaactctgatctgcaaattcttggg
atgtctaatttgagtaataataaaactccagtcgcccgcacagccacactgtcagccaat
cggatggtgcccacccacactgagggtacttcacagctgagagcctcttgccagcttcca
actctccagcagtctttgttcccagaccgtgtcctgaggctgcactttctggacatgccc
acctgctggactggcatctgtcttgtcacttctctggcctcacctctgcgaaaggaacac
aaaagtcaggaccccagttcactctgtcaaaaggaaaagaatgagctgaaagctgagtca
tgcagcacctcgcctgactgggtagcgctgccacgtcggggcggggaagagcgtcgtcgc
gtccgggtgacgtctcccgagggcgtcggcagggtcggcggcgtcggcagcagtgtcgac
ggcagcggcggcggcgggtgggaaatggcggagtatctggcctccatcttcggcaccgag
aaagacaatcgccgactcccggaagccgcctcgagccgcgctgaaagttgcctggagcat
ccgggccttttggacgtggacacgtttgttccaactttcggctgtgaatgtcctgtcgag
caagctctgaccatcttgattcaaaacatctatcgtaatccccaaaacagtgcacagacg
gctgacggctcacactgtgccgtgagcgatgtggagatgcaggaacactatgatgagttt
tttgaggaggtttttacagaaatggaggagaagtatggggaagtagaggagatgaacgtc
tgtgacaacctgggagaccacctggtggggaacgtgtacgtcaagtttcgccgtgaggaa
gatgcggaaaaggctgtgattgacttgaataaccgttggtttaatggacagccgatccac
gccgagctgtcacccgtgacggacttcagagaagcctgctgccgtcagtatgagatggga
gaatgcacacgaggcggcttctgcaacttcatgcatttgaagcccatttccagagagctg
cggcgggagctgtatggccgccgtcgcaagaagcatagatcaagatcccgatcccgggag
cgtcgttctcggtctagagaccgtggtcgtggcggtggcggtggcggtggtggagtgtgg
gtctatgatgcggttgaggtgggaagatgtatgatacatacagcaaagtacctcaaagct
aaacctggtttaaaagacaattgcaaggtgatcatcgtggtcaagaagcaacacaaagcc
agcatccaggccagccctccccggccataa

>gi568815577f:43069100_43272277|GENSCAN_predicted_peptide_3|115_aa
MIYPIFGMSVSDGGGSGGGEITESMSAKHTLLGAPPPTAQLKDKRPQGDSRKGDGVTGQD
PSYEWELDQELSVLSHLLPVLGPLSETLQAMELTILPLAAVVLFRGTVIAFISIL

>gi568815577f:43069100_43272277|GENSCAN_predicted_CDS_3|348_bp
atgatctacccaatatttgggatgtctgtgagtgacggcggtggtagtggtggtggtgaa
atcacggaatcaatgtctgcaaagcacacgctcttgggagcacctcctcccaccgcacag
ctgaaagacaagcgaccacagggagacagcagaaagggagatggagtcaccggccaggac
cccagctatgagtgggagctggaccaggagttgagtgtcctgagccacctcctccctgtg
ctgggtccactctcagaaacactccaggccatggagctgaccatcctgcctctggcagct
gtggtgctgtttaggggaacggtcattgccttcatctccattttatag

>gi568815577f:43069100_43272277|GENSCAN_predicted_peptide_4|330_aa
MPTTLVRPEITEESEHPGDAACPSPMQPTLGPAQPLGRRGWSPCAVPSAAHPAERPQAAG
LHTCDRPEAPAAGPTRLQFPSRQPMALRPLPDSGAGSLRSPLQARPILWQSLDVPRRPLS
RQALQRVGGLGLGSTLRCPEAPLTPASLQVPVVPKLNMDVTIQHPWFKRTLGPFYPSRLF
DQFFGEGLFEYDLLPFLSSTISPYYRQSLFRTVLDSGISEVRSDRDKFVIFLDVKHFSPE
DLTVKVQDDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFCG
PKIQTGLDATHAERAIPVSREEKPTSAPSS

>gi568815577f:43069100_43272277|GENSCAN_predicted_CDS_4|993_bp
atgcccaccacgctcgtgaggccggagatcaccgaggaatccgagcacccgggggacgct
gcatgcccgagccccatgcagcccacactgggtcctgcccagcccctgggccggagggga
tggtccccctgcgccgtccccagcgctgcccaccctgcagaacgtcctcaggcggccggg
ctccacacctgcgacaggcccgaggccccggctgcaggccccactcggctgcagttcccg
tcgaggcagccaatggccttgaggcctctcccagactcaggcgctggctcactcagaagc
cccctgcaggcccggccaatcctgtggcagagcctcgacgtcccacggcggcctctgagc
cgccaggccctacagcgtgtgggagggctcggccttggctccacactgcgctgcccagag
gccccgctgactcctgccagcctccaggtccccgtggtaccaaagctgaacatggacgtg
accatccagcacccctggttcaagcgcaccctggggcccttctaccccagccggctgttc
gaccagtttttcggcgagggcctttttgagtatgacctgctgcccttcctgtcgtccacc
atcagcccctactaccgccagtccctcttccgcaccgtgctggactccggcatctctgag
gttcgatccgaccgggacaagttcgtcatcttcctcgatgtgaagcacttctccccggag
gacctcaccgtgaaggtgcaggacgactttgtggagatccacggaaagcacaacgagcgc
caggacgaccacggctacatttcccgtgagttccaccgccgctaccgcctgccgtccaac
gtggaccagtcggccctctcttgctccctgtctgccgatggcatgctgaccttctgtggc
cccaagatccagactggcctggatgccacccacgccgagcgagccatccccgtgtcgcgg
gaggagaagcccacctcggctccctcgtcctaa

>gi568815577f:43069100_43272277|GENSCAN_predicted_peptide_5|91_aa
MGSPKIQSLLSSSNHGLPWLTLDICHQGPTNVVLAEPVLLEDPTGGAEEIRQPTSQGKFC
LGWPWCSVRLSKEPDRGSGEPPTGLADPAKA

>gi568815577f:43069100_43272277|GENSCAN_predicted_CDS_5|276_bp
atgggcagccccaaaatacaaagtctcctatccagttccaaccacggcctgccctggctg
acactggacatttgccaccaggggcccacaaacgtggtccttgctgagcctgtgctgctg
gaagacccaactgggggagcagaggagatcagacagcccaccagccaggggaagttctgc
ctgggctggccctggtgctccgtgcgactctccaaggagcctgatcgaggatctggtgaa
ccacccacgggccttgcagaccctgccaaggcctag

>gi568815577f:43069100_43272277|GENSCAN_predicted_peptide_6|425_aa
MQPAKEDSSAQVRVLRPHSQVPCEEEVEREERGLGPTLTDLECGPWARPLSPDTQVYQYS
SFGPKWTPAAPLTQSLHQPRISTKPEFPPSQGFHQSRTCNNPELPPTQSFRQSRASTNPE
LPPTQSFRQPRASTNPELPPIQSLHQPRASANPELPPIQSFRQPRASANPELPPTQSFRQ
SRASIQSFCQPRASTNPIFCQPRTSANPELLPTQSFHQSRSSASPELLPTQSFRQPQASA
NPERAPTQSFHQPRASANLELLPTQSFCPELPSNQSFHQPRAFANPELLPRASASPELPS
TQSSHQPIASANLQLPPTQSFHQPRACTNPELLPMQSFHQARASTNHELPPTTSFHQPTA
CSSVSRKGGAALWVAFVPVGKEDVLADLDLHAGSRTPEDALQVTSRHVESLLESGIHSSE
LEEKG

>gi568815577f:43069100_43272277|GENSCAN_predicted_CDS_6|1278_bp
atgcaacctgcaaaagaggacagcagtgcccaagtcagggtcctgcggccccactcacag
gtgccctgtgaggaggaggtggagcgagaggagaggggactgggcccgacactcactgat
cttgaatgcggcccatgggccagacctctctcaccagacactcaggtgtaccagtacagc
agctttggacctaagtggactccagcagctccattaacccagagcttgcaccaacccaga
atttccaccaagccagagtttccaccaagccagggcttccaccaatctagaacttgcaac
aatccagagcttccgccaacccagagcttccgtcaatccagagcttccaccaacccagag
cttccaccaacccagagcttccgccaacccagagcttccaccaacccagagcttcctcca
atccagagcttgcatcaacccagagcttccgccaacccagagcttccgccaatccagagc
ttccgccaacccagagcttccgccaatccagagcttccgccaacccagagcttccgccaa
tccagagcttccatccagagcttctgccaacccagagcttccaccaatccgatcttctgc
cagcccagaacttccgccaacccagagcttctgccaacccagagcttccaccaatccaga
tcttctgctagcccagagcttctgccaacccagagcttccgccagccccaagcttctgcc
aacccagagcgtgcaccaacccagagcttccaccaacccagggcttctgccaatctagag
cttctgccaacccagagcttctgcccagagcttccgtcaaaccagagcttccaccaaccc
agagcttttgccaacccagagcttctgcccagagcttctgccagcccagagcttccatca
acccagagctcgcaccaacctatagcttctgccaacctacagcttccaccaacccagagc
ttccatcaacccagagcttgcaccaacccagagcttctgccaatgcaaagcttccaccaa
gctagagcttccaccaaccacgagcttccaccaaccacgagcttccaccaacccacagct
tgcagctcagtctccagaaaggggggagctgctctgtgggtggcattcgttccagtgggg
aaagaggacgttcttgcggaccttgacctccatgccggcagccggaccccggaggatgct
ctacaagtcaccagcaggcatgtggagtcactgttggagtcaggcatccactccagtgaa
ctggaggagaagggctag

>gi568815577f:43069100_43272277|GENSCAN_predicted_peptide_7|375_aa
MVMVLVGVKVVVVVMVVVMVGVKVVVVGMVMVLVGVKVVVVMVVVVVVVMVMVVVGVKVV
VVVMVVVVGVKVVVVVVGVKVVVVVMVVVVVGVKVVVVVIVMVVVGVKVVVVMVVILVVV
MVVMVVIVRVMLVVMGTVTVVLVVVLVMGWECISASASVKWDESCNPYPRAVVRIKGTMV
TPVKERGGSCGCCDLGELETSYADEHLGPGQLDQATPTECCKGACAWQSCTLLAALQCRP
TVQDSAPPETVPPGGGILRSLLGFLPPSASLSGSDGPQHSFHGNPMNACRAGHLEIGVQS
HVQPAAGSTTRKAERHNGHSNNHNNKSGRAEGSPQCARRRAELDIVSLTAGACPAEEDVE
GGQLCSLQTPAGTPA

>gi568815577f:43069100_43272277|GENSCAN_predicted_CDS_7|1128_bp
atggtgatggtgctggtgggagtgaaggtagtggtggtggtgatggtggtggtgatggtg
ggagtgaaggtagtggtggtggggatggtgatggtgctggtgggagtgaaggtagtggtg
gtgatggtggtggtggtggtggtggtgatggtgatggtggtggtgggagtgaaggtggtg
gtggtggtgatggtggtggtggtgggagtgaaagtggtggtggtggtggtgggagtgaag
gtagtggtggtggtgatggtggtggtggtggtgggagtgaaggtggtggtggtggtgatc
gtgatggtggtggtgggagtgaaggtggtggtggtgatggtggtgatactggttgtagtg
atggtagtgatggtggtgatcgtgagggtgatgctggtggtgatgggaacagtgacagtt
gtattggtggtagtattggtgatggggtgggaatgcatctcagcttctgcatctgtaaaa
tgggatgagagttgcaatccttacccgagagctgtggtgaggatcaaagggacaatggtc
acacctgtaaaagagagaggaggatcctgcggatgctgtgatctcggagagttggagacc
tcttatgctgatgagcacttgggccctggccagctggaccaggctacccccacagagtgc
tgcaagggggcatgtgcctggcagagctgcaccctgctggctgccctccagtgcagaccc
accgtgcaagactccgcccctccagagactgtgccccctggtggaggcatcctcaggagc
ctcctgggcttccttcctccatctgcctccttgagtggaagcgacgggccccagcacagt
ttccacggcaaccccatgaatgcgtgcagggccgggcatctggaaataggtgtccaaagt
cacgtgcaaccagcagcaggctcaacaacaaggaaggcagagcgtcacaatggccacagc
aataaccacaataacaagagtggcagagctgagggcagtccccagtgtgccaggcgccga
gctgagctggacatcgtctcactcacggcaggagcctgtcctgcggaggaggatgtggag
ggcggccagttgtgtagcttacaaactccagccgggactccagcctga