GENSCAN 1.0	Date run:  5-Nov-116	Time: 05:01:56

Sequence gi568815575r:24688395_24889069 : 200675 bp : 38.49% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.00 Prom +   1673   1712   40                              -3.25
 1.01 Init +   5568   5610   43  2  1  100   65    61 0.647   5.63
 1.02 Intr +  11031  11155  125  1  2  101  100   110 0.932  12.88
 1.03 Intr +  14857  14953   97  0  1   23   78   233 0.916  14.46
 1.04 Intr +  15995  16075   81  0  0   85   77   202 0.949  17.49
 1.05 Intr +  26160  26275  116  1  2   43   76   121 0.986   5.65
 1.06 Intr +  26747  26809   63  1  0   94   84    34 0.680   1.60
 1.07 Intr +  27968  28060   93  1  0   79   55    66 0.663   1.64
 1.08 Intr +  28490  28577   88  1  1   53  119    64 0.877   4.62
 1.09 Intr +  28896  29097  202  1  1   36   52   299 0.899  18.52
 1.10 Intr +  29186  29364  179  2  2   15   89   165 0.990   7.94
 1.11 Intr +  34761  34873  113  1  2  100   52     0 0.805  -3.22
 1.12 Intr +  35941  36057  117  0  0   43   76   115 0.974   5.54
 1.13 Intr +  37587  37661   75  2  0   14  123    94 0.689   4.29
 1.14 Intr +  38539  38677  139  0  1   98   85    35 0.996   3.32
 1.15 Intr +  39388  39542  155  2  2  102   -1   158 0.790   7.17
 1.16 Intr +  40884  40973   90  2  0   99   20    76 0.550   1.17
 1.17 Intr +  42248  42346   99  1  0   39   90    77 0.649   2.39
 1.18 Intr +  43976  44060   85  1  1  103   68    49 0.886   2.87
 1.19 Intr +  45361  45422   62  2  2   75   98    31 0.893   0.33
 1.20 Intr +  47005  47094   90  0  0   90   89    50 0.959   4.57
 1.21 Intr +  49231  49347  117  0  0   87   42    65 0.743   1.54
 1.22 Intr +  50981  51156  176  1  2   89   80   127 0.988   9.82
 1.23 Intr +  52981  53110  130  1  1   75   54    57 0.952   0.78
 1.24 Intr +  53608  53727  120  0  0   22   68   122 0.879   3.37
 1.25 Intr +  54836  54935  100  1  1   33   87   178 0.999  10.96
 1.26 Intr +  57024  57148  125  1  2   89   68    57 0.998   3.18
 1.27 Intr +  59917  60066  150  0  0   62   76   176 0.998  13.24
 1.28 Intr +  60476  60598  123  1  0   70   84    83 0.975   5.96
 1.29 Term +  73379  73540  162  1  0   82   39    79 0.129  -0.65
 1.30 PlyA +  75830  75835    6                               1.05

 2.03 PlyA -  78386  78381    6                               1.05
 2.02 Term - 100696  99998  699  1  0   74   38   924 0.861  78.55
 2.01 Init - 108402 108352   51  0  0   61   67    39 0.226   0.31
 2.00 Prom - 108730 108691   40                              -5.35

 3.00 Prom + 115068 115107   40                              -3.95
 3.01 Init + 118187 118231   45  1  0   60   77    32 0.233   0.04
 3.02 Intr + 122314 122406   93  0  0   77  100    60 0.910   5.34
 3.03 Intr + 124264 124469  206  0  2   41   87   229 0.990  15.18
 3.04 Intr + 126585 126717  133  0  1  106   94    97 0.935  11.83
 3.05 Intr + 133058 133189  132  1  0   85   97    48 0.969   5.32
 3.06 Intr + 138033 138207  175  2  1   86  106   249 0.998  25.09
 3.07 Intr + 153258 153436  179  1  2   69   57   103 0.831   4.02
 3.08 Intr + 155152 155283  132  0  0   57   95   120 0.809   9.52
 3.09 Intr + 160484 160506   23  1  2   87   76    13 0.192  -4.58
 3.10 Intr + 166933 167082  150  1  0   55   50   155 0.425   6.76
 3.11 Term + 170941 171049  109  1  1   82   38    74 0.268  -1.20
 3.12 PlyA + 173760 173765    6                               1.05

 4.04 PlyA - 174074 174069    6                               1.05
 4.03 Term - 186475 186394   82  0  1   70   42    87 0.202  -1.51
 4.02 Intr - 188651 188555   97  0  1   79   67    93 0.305   4.45
 4.01 Init - 198533 198491   43  2  1   78  111    35 0.595   5.43

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 180467 180306  162  2  0   98   36    94 0.874   2.15


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815575r:24688395_24889069|GENSCAN_predicted_peptide_1|1104_aa
MAPVHGDDCEIGASALSDSGSFVSSRARREKKSKKGRQEALERLKKAKAGEKYKYEVEDF
TGVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGREIFDDDLEDDALDADEKGKDGK
ARNKDKRNVKKLAVTKPNNIKSMFIACAGKKTADKAVDLSKDGLLGDILQDLNTETPQIT
PPPVMILKKKRSIGASPNPFSVHTATAVPSGKIASPVSRKEPPLTPVPLKRAEFAGDDVQ
VESTEEEQESGAMEFEDGDFDEPMEVEEVDLEPMAAKAWDKESEPAEEVKQEADSGKGTV
SYLGSFLPDVSCWDIDQEGDSSFSVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYN
QPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVY
EEFDEKIATKYKIMKFKSKPVEKNYAFEIPDVPEKSEYLEVKYSAEMPQLPQDLKGETFS
HVFGTNTSSLELFLMNRKIKGPCWLEVKSPQLLNQPVSWCKVEAMALKPDLVNVIKDVSP
PPLVVMAFSMKTMQNAKNHQNEMPVASVPSSCDNQKMPTNTSSDVPGSGDVYKATTVLKS
TEDMSKGLRNQLEESSTEQRWDNVRIIAMAALVHHSFALDKAAPKPPFQSHFCVVSKPKD
CIFPYAFKEVIEKKNVKVEVAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRI
NVCKAPHWSKIGRLKRSNMPKLGGRSGFGERNATCGRMICDVEISAKELIRCKSYHLSEL
VQQILKTERVVIPMENIQNMYSESSQLLYLLEHTWKDAKFILQIMCELNVLPLALQITNI
AGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQKLGDEDEEIDGDTNKYK
KGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTE
DGEQEQIPELPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKL
TANSMYGCLGFSYSRFYAKPLAALVTYKGREPGILQVIFAECVHGGKWRQMTLLVTHCLE
RKAFGNDSSKTRARAWEAKLVITY

>gi568815575r:24688395_24889069|GENSCAN_predicted_CDS_1|3315_bp
atggcacctgtgcacggcgacgactgtgagataggggcgagtgctctgtcagattcaggg
agttttgtatcttctcgagcccggcgagaaaaaaaatcaaagaaggggcgccaagaagcc
ctagaaagactgaaaaaggctaaagctggtgagaagtataaatatgaagtcgaggacttc
acaggtgtttatgaagaagttgatgaagaacagtattcgaagctggttcaggcacgccag
gatgatgactggattgtggatgatgatggtattggctatgtggaagatggccgagagatt
tttgatgatgaccttgaagatgatgcccttgatgctgatgagaaaggaaaagatggtaaa
gcacgcaataaagacaagaggaatgtaaagaagctcgcagtgacaaaaccgaacaacatt
aagtcaatgttcattgcttgtgctggaaagaaaactgcagataaagctgtagacttgtcc
aaggatggtctgctaggtgacattctacaggatcttaacactgagacacctcaaataact
ccaccacctgtaatgatactgaagaagaaaagatccattggagcttcaccgaatcctttc
tctgtgcacaccgccacggcagttccttcaggaaaaattgcttcccctgtctccagaaag
gagcctccattaactcctgttcctcttaaacgtgctgaatttgctggcgatgatgtacag
gtcgagagtacagaagaagagcaggagtcaggggcaatggagtttgaagatggtgacttt
gatgagcccatggaagttgaagaggtggacctggagcctatggctgccaaggcttgggac
aaagagagtgagccagcagaggaagtgaaacaagaggcggattctgggaaagggaccgtg
tcctacttaggaagttttctcccggatgtctcttgttgggacattgatcaagaaggtgat
agcagtttctcagtgcaagaagttcaagtggattccagtcacctcccattggtaaaaggg
gcagatgaggaacaagtattccacttttattggttggatgcttatgaggatcagtacaac
caaccaggtgtggtatttctgtttgggaaagtttggattgaatcagccgagacccatgtg
agctgttgtgtcatggtgaaaaatatcgagcgaacgctttacttccttccccgtgaaatg
aaaattgatctaaatacggggaaagaaacaggaactccaatttcaatgaaggatgtttat
gaggaatttgatgagaaaatagcaacaaaatataaaattatgaagttcaagtctaagcca
gtggaaaagaactatgcttttgagatacctgatgttccagaaaaatctgagtacttggaa
gttaaatactcggctgaaatgccacagcttcctcaagatttgaaaggagaaactttttct
catgtatttgggaccaacacatctagcctggaactgttcttgatgaacagaaagatcaaa
ggaccttgttggcttgaagtaaaaagtccacagctcttgaatcagccagtcagttggtgt
aaagttgaggcaatggctttgaaaccagacctggtgaatgtaattaaggatgtcagtcca
ccaccgcttgtcgtgatggctttcagcatgaagacaatgcagaatgcaaagaaccatcaa
aatgagatgccagtagcatccgtcccctctagttgtgacaaccaaaaaatgcctacaaac
acatcatcagatgtccccgggtcaggggatgtgtataaagcaacgacagtattaaaatct
actgaagatatgtcaaaaggactcaggaatcaacttgaagagtcttctactgaacaaaga
tgggacaatgtgaggattattgctatggcagctttggtccatcacagttttgcattggat
aaagcagccccaaagcctccctttcagtcacacttctgtgttgtgtctaaaccaaaggac
tgtatttttccatatgctttcaaagaagtcattgagaaaaagaatgtgaaggttgaggtt
gctgcaacagaaagaacactgctaggttttttccttgcaaaagttcacaaaattgatcct
gatatcattgtgggtcataatatttatgggtttgaactggaagtactactgcagagaatt
aatgtgtgcaaagctcctcactggtccaagataggtcgactgaagcgatccaacatgcca
aagcttgggggccggagtggatttggtgaaagaaatgctacctgtggtcgaatgatctgt
gatgtggaaatttcagcaaaggaattgattcgttgtaaaagctaccatctgtctgaactt
gttcagcagattctaaaaactgaaagggttgtaatcccaatggaaaatatacaaaatatg
tacagtgaatcttctcaactgttatacctgttggaacacacctggaaagatgccaagttc
attttgcagatcatgtgtgagctaaatgttcttccattagcattgcagatcactaacatc
gctgggaacattatgtccaggacgctgatgggtggacgatccgagcgtaacgagttcttg
ttgcttcatgcattttacgaaaacaactatattgtgcctgacaagcagattttcagaaag
cctcagcaaaaactgggagatgaagatgaagaaattgatggagataccaataaatacaag
aaaggacgtaagaaagcagcttatgctggaggcttggttttggaccccaaagttggtttt
tatgataagttcattttgcttctggacttcaacagtctatatccttccatcattcaggaa
tttaacatttgttttacaacagtacaaagagttgcttcagaggcacagaaagttacagag
gatggagaacaagaacagatccctgagttgccagatccaagcttagaaatgggcattttg
cccagagagatccggaaactggtagaacggagaaaacaagtcaaacagctaatgaaacag
caagacttaaatccagaccttattcttcagtatgacattcgacagaaggctttgaagctc
acagcgaacagtatgtatggttgcctgggattttcctatagcagattttacgccaaacca
ctggctgccttggtgacatacaaaggaagggagccaggaattcttcaagtgatatttgct
gagtgtgtacatggagggaaatggagacaaatgacattgcttgtgacccactgccttgag
aggaaagccttcggtaatgattccagtaaaactagagctagagcttgggaagctaaactt
gtgattacttactag

>gi568815575r:24688395_24889069|GENSCAN_predicted_peptide_2|249_aa
MEITEKQTEAKTFSRGDLSDTADTMGFRDLKSPAGLQVLNDYLADKSYIEGYVPSQADVA
VFEAVSSPLPADLCHALRWYNHIKSYEKEKASLPGVKKALGKYGPADVEDTTGSGATDSK
DDDDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMA
KLEERVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQS
MDVAAFNKI

>gi568815575r:24688395_24889069|GENSCAN_predicted_CDS_2|750_bp
atggagatcacagagaagcagacagaagctaagacattcagcagaggggatctctcggat
acagccgacaccatgggtttcagagacctgaaaagccccgccggcctccaggtgctcaac
gattacctggcggacaagagctacatcgaggggtatgtgccatcacaagcagatgtggca
gtatttgaagccgtgtccagcccactgcctgccgacttgtgtcatgccctacgttggtat
aatcacatcaagtcttacgaaaaggaaaaggccagcctgccaggagtgaagaaagctttg
ggcaagtatggtcctgccgatgtggaagacactacaggaagtggagctacagatagtaaa
gatgatgatgacattgacctctttggatctgatgatgaggaggaaagtgaagaagcaaag
aggctaagggaagaacgtcttgcacaatatgaatcaaagaaagccaaaaaacctgcactt
gttgccaagtcttccatcttactagatgtgaaaccttgggatgatgagacagatatggcg
aaattagaggagcgcgtcagaagcattcaagcagacggcttagtctggggctcatctaaa
ctagttccagtgggatacggaattaagaaacttcaaatacagtgtgtagttgaagatgat
aaagtcggaacagatatgctggaggagcagatcactgcttttgaggactacgtgcagtcc
atggatgtggctgctttcaacaagatctaa

>gi568815575r:24688395_24889069|GENSCAN_predicted_peptide_3|458_aa
MEHYHQLLVRPTEKMMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEI
DIDGVFKSLLLLKKKKYAALVVEPTSDGNYVTKQELKGLDIVRRDWCDLAKDTGNFVIGQ
ILSDQSRDTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVA
LWINSQGGRKVKAGDTVSYVICQDGSNLTASQRAYAPEQLQKQDNLTIDTQYYLAQQIHP
VVARICEPIDGIDAVLIATWLGLDPTQFRVHHYHKDEENDALLGGPAQLTDEEKYRDCER
FKCPCPTCGTENIYDNVFDGSGTDMEPSLYRCSNIDCKASPLTFTVQLSNKLIMDIRRFI
KKYYDSYLVQVDLSVSVDKCIESYIYYHSQDTEQGHTFWHDLPSATHHTEYAANPKDAQN
ETFIPCRPSACRTGELGIPQGSLMLDYLHTFTPAISSA

>gi568815575r:24688395_24889069|GENSCAN_predicted_CDS_3|1377_bp
atggaacattatcatcagctgctagtgaggcccactgaaaagatgatgaatcttgaagtt
atttatggagatacagattcaattatgataaacaccaatagcaccaatctggaagaagta
tttaagttgggaaacaaggtaaaaagtgaagtgaataagttgtacaaactgcttgaaata
gacattgatggggttttcaagtctctgctactgctgaaaaaaaagaagtacgctgctctg
gttgttgagccaacgtcggatgggaattatgtcaccaaacaggagctcaaaggattagat
atagttagaagagattggtgtgatcttgctaaagacactggaaactttgtgattggccag
attctttctgatcaaagccgggacactatagtggaaaacattcagaagaggctgatagaa
attggagaaaatgtgctaaatggcagtgtcccagtgagccagtttgaaattaacaaggca
ttgacaaaggatccccaggattaccctgataaaaaaagcctacctcatgtacatgttgcc
ctctggataaattctcaaggaggcagaaaggtgaaagctggagatactgtgtcatatgtc
atctgtcaggatggatcaaacctcactgcaagtcagagggcctatgcgcctgagcagctg
cagaaacaggataatctaaccattgacacccagtactacctggcccagcagatccaccca
gtcgtggctcggatctgtgaaccaatagacggaattgatgctgtcctcattgcaacgtgg
ttgggacttgaccccacccaatttagagttcatcattatcataaagatgaagagaatgat
gctctacttggtggcccagcacagctcactgatgaagagaaatacagggactgtgaaaga
ttcaaatgtccatgccctacatgtggaactgagaatatttatgataatgtctttgatggt
tcgggaacagatatggagcccagcttgtatcgttgcagtaacatcgattgtaaggcttca
cctctgacctttacagtacaactgagcaacaaattgatcatggacattagacgtttcatt
aaaaagtactatgatagctatcttgtgcaggtggacctttctgtgagtgttgacaaatgc
atagaatcatatatctactaccacagtcaagatacagaacagggtcatactttctggcat
gatcttccatctgcgacccaccatactgaatatgctgccaatcccaaagatgcacagaat
gaaacttttatcccttgcagaccatctgcctgccgcactggagagcttggcattcctcag
ggatcccttatgcttgactatctccacactttcactcctgccatttcctctgcgtag

>gi568815575r:24688395_24889069|GENSCAN_predicted_peptide_4|73_aa
MATSEPVLKNEWKFGLSVFSPVTKGDSHGEHNCNNLQNTMATHITTRILNSGGTLESPGQ
RYNTAPPPECLIQ

>gi568815575r:24688395_24889069|GENSCAN_predicted_CDS_4|222_bp
atggcaacttctgaaccggtcttgaaaaatgagtggaagtttggattatcagttttttcg
ccagttaccaagggcgactcgcatggtgaacataattgcaataatttgcaaaacaccatg
gcaacccacattacaactagaattcttaactctggtggcacactggaatcaccagggcag
cgttacaacacagcgccacccccagagtgtctgattcagtag