GENSCAN 1.0	Date run:  4-Nov-116	Time: 17:57:15

Sequence gi568815574r:2686992_2887603 : 200612 bp : 43.65% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.00 Prom +    932    971   40                              -2.86
 1.01 Init +   4370   4436   67  1  1  110   88   248 0.995  26.23
 1.02 Intr +  27431  27463   33  0  0  114  105    15 0.831   3.99
 1.03 Intr +  32670  32714   45  1  0  108  101    57 0.986   7.38
 1.04 Intr +  33365  33433   69  0  0   57  111    61 0.947   4.45
 1.05 Intr +  35636  35683   48  0  0  116   87    37 0.915   5.05
 1.06 Intr +  39269  39382  114  0  0  104  115    95 0.963  14.22
 1.07 Intr +  51209  51265   57  0  0  107   99    86 0.851  10.46
 1.08 Intr +  53692  53735   44  2  2   80   94    -4 0.825  -2.64
 1.09 Intr +  54144  54226   83  2  2   81  121     3 0.839   1.34
 1.10 Term +  54633  54744  112  0  1   61   47   135 0.444   4.73
 1.11 PlyA +  54889  54894    6                               1.05

 2.00 Prom +  56099  56138   40                              -1.56
 2.01 Init +  65284  65344   61  0  1   91   94    44 0.897   4.71
 2.02 Intr +  66915  67031  117  1  0   80  110    19 0.826   3.74
 2.03 Term +  67636  67748  113  2  2   38   47    80 0.381  -2.38
 2.04 PlyA +  68233  68238    6                               1.05

 3.00 Prom +  73821  73860   40                              -3.76
 3.01 Init +  75435  75498   64  2  1   52  105   100 0.931   9.41
 3.02 Intr +  80561  80681  121  0  1   73   58    50 0.863   0.05
 3.03 Intr +  81367  81500  134  1  2   61   80    83 0.898   5.09
 3.04 Intr +  82750  82782   33  2  0   91   91    15 0.550   0.29
 3.05 Intr +  83559  83600   42  1  0   99  119    69 0.995   9.31
 3.06 Intr +  87725  87748   24  0  0   99  109    25 0.719   3.70
 3.07 Term +  92575  92597   23  2  2   97   45    22 0.377  -2.73
 3.08 PlyA +  94938  94943    6                               1.05

 4.02 PlyA -  95846  95841    6                               1.05
 4.01 Sngl - 100612  99998  615  1  0   46   48   392 0.736  27.20
 4.00 Prom - 100940 100901   40                              -7.56

 5.00 Prom + 101106 101145   40                              -8.36
 5.01 Init + 102860 102948   89  1  2   84   54    60 0.777   0.81
 5.02 Term + 103021 103216  196  1  1   23   49   285 0.946  14.98
 5.03 PlyA + 103608 103613    6                               1.05

 6.03 PlyA - 103629 103624    6                               1.05
 6.02 Term - 120155 119454  702  2  0   15   48   236 0.143   5.83
 6.01 Init - 121325 120921  405  2  0   78   80   248 0.150  19.59
 6.00 Prom - 121399 121360   40                              -8.56

 7.03 PlyA - 121433 121428    6                               1.05
 7.02 Term - 123686 123414  273  2  0   69   37   217 0.865  10.17
 7.01 Init - 126672 126667    6  0  0   78   90     0 0.526   0.07
 7.00 Prom - 136522 136483   40                              -2.36

 8.00 Prom + 138923 138962   40                              -6.06
 8.01 Init + 143314 143459  146  0  2   78   98   127 0.630  12.29
 8.02 Intr + 154582 154636   55  1  1   56   95     7 0.013  -2.82
 8.03 Intr + 155174 155251   78  1  0  117   59    45 0.929   4.25
 8.04 Intr + 157086 157266  181  2  1   87   82   131 0.981  11.84
 8.05 Intr + 158655 158752   98  1  2   69   95   182 0.973  16.73
 8.06 Intr + 167609 167780  172  1  1   67  111   178 0.986  17.52
 8.07 Intr + 178097 178254  158  0  2  136   64   164 0.941  18.53
 8.08 Term + 179802 179903  102  2  0  124   32    41 0.641   0.38
 8.09 PlyA + 179939 179944    6                               1.05

 9.03 PlyA - 181143 181138    6                               1.05
 9.02 Term - 181379 181159  221  0  2  116   49    25 0.029  -1.40
 9.01 Init - 190374 190245  130  0  1   26   82   154 0.656   8.91

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl - 121325 120780  546  2  0   78   41   263 0.834  16.71


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815574r:2686992_2887603|GENSCAN_predicted_peptide_1|223_aa
MARGAALALLLFGLLGVLVAAPDGGFDLSDALPGDDFDLGDAVVDGENDDPRPPNPPKPM
PNPNPNHPSSSGSFSDADLADGVSGGEADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKL
CFKENAEQGEVDMESHRNANAEPAEIKPLAPESCRNCVHNLGCLQITCPSSTSETPGSPD
FFLIKIRYSSVSRYSSKSRYSLHPDTVLPKMYKMYRIFPTLKT

>gi568815574r:2686992_2887603|GENSCAN_predicted_CDS_1|672_bp
atggcccgcggggctgcgctggcgctgctgctcttcggcctgctgggtgttctggtcgcc
gccccggatggtggtttcgatttatccgatgcccttcctggggatgactttgacttagga
gatgctgttgttgatggagaaaatgacgacccacgaccaccgaacccacccaaaccgatg
ccaaatccaaaccccaaccaccctagttcctccggtagcttttcagatgctgaccttgcg
gatggcgtttcaggtggagaagccgacgccccaggcgtgatccccgggattgtgggggct
gtcgtggtcgccgtggctggagccatctctagcttcattgcttaccagaaaaagaagcta
tgcttcaaagaaaatgcagaacaaggggaggtggacatggagagccaccggaatgccaac
gcagagccagctgaaataaaaccactggctcctgaaagttgtaggaactgtgtccacaat
cttggctgtttacaaatcacgtgtccatcgagcacgtctgaaacccctggtagccccgac
ttctttttaattaaaataagatactcctctgtatccagatactcctctaaatccaggtac
tccctacatccagatactgtacttcctaagatgtacaagatgtaccgcattttcccaaca
ctgaagacttga

>gi568815574r:2686992_2887603|GENSCAN_predicted_peptide_2|96_aa
MESWWGLPCLAFLCFLMHARVQCSINYVRYATPHYKVDCVLDDLSIRWLMKSVLSTLKAG
RLQAEEQGEPVQVPKLKNLESDVPASTMGERCRPED

>gi568815574r:2686992_2887603|GENSCAN_predicted_CDS_2|291_bp
atggagagctggtggggacttccctgtcttgcgttcctgtgttttctaatgcacgcccga
gtacaatgttcaataaattatgtgaggtatgcaacacctcattataaagttgactgtgtg
ctagatgatttgtccatccgttggctgatgaaaagtgttctgagcactctgaaggcaggc
cgtctgcaggctgaggagcaaggagagccagtccaggttccaaaactgaagaacttggag
tctgatgttccagcatccaccatgggagaaagatgtaggccagaagactag

>gi568815574r:2686992_2887603|GENSCAN_predicted_peptide_3|146_aa
MGSEEQIMHQGGLLSSGVCSPVENKPRESNGVMCNPTLETETPELALSTWDISQPRGLTP
DPCLDWNCWQPWRGDVAQIQEADTVPVPQPSLSSLDHDDQERWRRPDTFIRLTAFGSGQR
DFDLADALDDPEPTKKPNSDTKIHSC

>gi568815574r:2686992_2887603|GENSCAN_predicted_CDS_3|441_bp
atgggttccgaggagcagatcatgcaccagggcggcctgctcagctctggtgtctgcagc
cccgtggaaaataaaccccgtgaaagcaatggcgtcatgtgcaacccgaccttggagaca
gagaccccagagttagcgttgtctacctgggacatctcccagcccaggggtcttactcca
gacccgtgtctcgactggaactgctggcagccttggaggggagatgttgcacagatccaa
gaggctgacacggttcctgtcccccagcccagtctgagcagcttggaccatgatgatcaa
gagcgctggaggaggccagacacattcattagattaactgcttttggatcaggtcaaaga
gactttgatttggcagatgcccttgatgaccctgaacccaccaagaagccaaactcagac
accaaaatccacagctgctga

>gi568815574r:2686992_2887603|GENSCAN_predicted_peptide_4|204_aa
MQSYASAMLSVFNSDDYSPAVQENIPALRRSSSFLCTESCNSKYQCETGENSKGNVQDRV
KRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMH
REKYPNYKYRPRRKAKMLPKNCSLLPADPASVLCSEVQLDNRLYRDDCTKATHSRMEHQL
GHLPPINAASSPQQRDRYSHWTKL

>gi568815574r:2686992_2887603|GENSCAN_predicted_CDS_4|615_bp
atgcaatcatatgcttctgctatgttaagcgtattcaacagcgatgattacagtccagct
gtgcaagagaatattcccgctctccggagaagctcttccttcctttgcactgaaagctgt
aactctaagtatcagtgtgaaacgggagaaaacagtaaaggcaacgtccaggatagagtg
aagcgacccatgaacgcattcatcgtgtggtctcgcgatcagaggcgcaagatggctcta
gagaatcccagaatgcgaaactcagagatcagcaagcagctgggataccagtggaaaatg
cttactgaagccgaaaaatggccattcttccaggaggcacagaaattacaggccatgcac
agagagaaatacccgaattataagtatcgacctcgtcggaaggcgaagatgctgccgaag
aattgcagtttgcttcccgcagatcccgcttcggtactctgcagcgaagtgcaactggac
aacaggttgtacagggatgactgtacgaaagccacacactcaagaatggagcaccagcta
ggccacttaccgcccatcaacgcagccagctcaccgcagcaacgggaccgctacagccac
tggacaaagctgtag

>gi568815574r:2686992_2887603|GENSCAN_predicted_peptide_5|94_aa
MERYSVQLRPATLQDAAPATLHLIPCGPPRLRGDEVAVPSGLVGYVMVTEQEEVSMGKPD
PWRGSGSDNQEEEPLERDFDRFLGTTTSFSRFTL

>gi568815574r:2686992_2887603|GENSCAN_predicted_CDS_5|285_bp
atggagaggtacagcgtccagttgcgcccagccacactgcaggacgccgcccccgccaca
ctacacctgataccctgcggcccaccacgtctacggggcgacgaggtggcagtgccgtcc
ggcctcgtgggatacgtgatggtgactgaacaggaggaggtgtcgatggggaagccagac
ccctggcggggttccgggagtgacaaccaagaagaggaacctctggagcgggactttgac
cgcttcctcggaaccactaccagcttcagccgcttcaccctgtag

>gi568815574r:2686992_2887603|GENSCAN_predicted_peptide_6|368_aa
MDKFLDTYTLPRLNQEEVESLNRPITGSEIEALINSLPTKTSPELDGFTAEFYQWYKEEL
IPLLLKLFQSAEKEGILPNSFYKASIILIPKPGRVTIKKENFRPISLVNIDAGILKKILA
NQIQQHIQKLIHHDQVIYRFNAIPMKLPMAFFTELEKTTLNSTWNQKRACIAKTILSKKN
KAGGIMLPDFKLYYKATITKTAWYWYQNREIDQWNRTEASEIIPHIYNHLIFEKPEKNKK
WGKDSLFNKWCWETWLAICRKLKLPPFLTPYTKINSRWIKDLNVRPKTIKTVEENKGNTT
QDIGMGKDFMSKTRKAMATKAKIDKWDLIKLKSFCTAKETTIGVNKLATEWEKIFGIYPS
DKGLISRI

>gi568815574r:2686992_2887603|GENSCAN_predicted_CDS_6|1107_bp
atggacaaattcctggacacctacactctcccaagactaaaccaggaagaagttgaatcc
ctgaatagaccaataacaggctctgaaattgaggcattaattaatagcctaccaaccaaa
acaagtccagaactagatggattcacagctgaattctaccagtggtacaaagaggagctg
ataccattacttctgaaactattccaatcagcagaaaaagagggaatcctccctaattca
ttttacaaggccagcatcatcctgataccaaagcctggcagagtcacaataaaaaaagag
aattttagaccaatatccctggtgaacattgatgcaggaatcctcaagaaaatactggca
aaccaaatccagcagcacatccaaaagcttatccatcatgatcaggtaatttatagattc
aatgccatccccatgaagctaccaatggctttcttcacagaattggaaaaaactacttta
aactccacatggaaccaaaaaagagcctgcattgccaagacaatcctaagcaagaagaac
aaagctggaggcatcatgctgcctgacttcaaactatactacaaggctacaataaccaaa
acagcatggtactggtaccaaaacagagagatagaccaatggaacagaacagaggcctca
gaaataataccacacatctacaaccatctgatctttgagaaacctgagaaaaacaagaaa
tggggaaaggattccctatttaataaatggtgctgggaaacctggctagccatatgtaga
aagctgaaactgcctcccttccttacaccttatacaaaaattaattcaagatggattaaa
gacttaaatgttagacctaaaaccataaaaactgtagaagaaaacaaaggcaataccact
caagacataggcatgggcaaagacttcatgagtaaaacacgaaaagcaatggcaacaaaa
gccaaaatagacaaatgggatctaattaaactaaagagcttctgcacagcaaaagaaact
accatcggagtgaacaagctagctacagaatgggagaaaatttttggaatctacccatct
gacaaagggctaatatccagaatctga

>gi568815574r:2686992_2887603|GENSCAN_predicted_peptide_7|92_aa
MEDCSSLPVMEQSCTENDFDELTEVGFRRLVITNFSELKEDIRTHRKEAKNLEKRLDKWL
TRTNSVENSLNDLKELKTMARKICDTCTSFSS

>gi568815574r:2686992_2887603|GENSCAN_predicted_CDS_7|279_bp
atggaggattgcagctccttaccagtgatggaacaaagctgcacagagaatgactttgat
gagttgacagaagtaggcttcagaaggttagtaataacaaacttctctgagctaaaggag
gatattcgaacccatcgcaaggaagctaaaaaccttgaaaaaagattagacaaatggcta
actagaacaaacagtgtagagaatagcttaaatgacctgaaggagctaaaaaccatggca
cgaaaaatatgtgacacatgcacaagcttcagtagctga

>gi568815574r:2686992_2887603|GENSCAN_predicted_peptide_8|329_aa
MGRNQRKKAENSEKQNASSPPKEHNSSSSREEKWVENEFDELTEVGFRRLWLHRKRTDSL
PSQSFAMARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKY
ALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRI
TVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIK
FDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKP
WISLPRGKGIRLTVAEERDKRLATKQSSG

>gi568815574r:2686992_2887603|GENSCAN_predicted_CDS_8|990_bp
atggggagaaaccagcgcaaaaaggctgaaaattccgaaaagcagaatgcctcttctcct
ccaaaggaacacaactcctcatcctcaagggaagaaaaatgggtggagaatgagtttgat
gaattgacagaagtaggtttcagaagactttggttgcaccggaaaagaacagattctctt
ccgtcgcagagtttcgccatggcccggggccccaagaagcacttaaagcgtgttgcagcg
ccgaagcattggatgcttgacaaactaacgggtgtatttgcacctcgtccatcgacaggt
ccccacaagctgagggaatgtcttcctctgatcgtcttcctcaggaatagactcaagtat
gcgttgactggagatgaggtaaagaagatatgtatgcaacgtttcatcaaaattgatggc
aaggttcgagtggatgtcacataccctgctggattcatggatgtcatcagcatcgagaag
acaggtgaacatttccgcctggtctatgacaccaagggccgttttgctgttcaccgcatc
acagtggaagaggcaaagtacaagttgtgcaaagtgaggaagattactgtgggagtgaag
ggaatccctcacctggtgactcatgatgctcgaaccatccgctacccagatcctgtcatc
aaggtgaacgatactgtgcagattgatttagggactggcaagataatcaactttatcaaa
tttgatacaggcaatttgtgtatggtgattggtggagccaacctcggtcgtgttggtgtg
atcaccaacagggaaagacatcctggttcttttgatgtggtgcatgtgaaggatgccaat
ggcaacagctttgccacgaggctttccaacatttttgtcattggcaatggcaataaacct
tggatttccctgcccaggggaaagggcattcgacttactgttgctgaagagagagataag
aggctggccaccaaacagagcagtggctaa

>gi568815574r:2686992_2887603|GENSCAN_predicted_peptide_9|116_aa
MTAGDHYHQDAETGSGPECQATLIFIGYKTKEQGKEYEPSPMIGSGTCQRRALGPQNNLP
DVTPAPNTISALCNLGDLGRHPSSPRIRLSAPTALSWLPEPAPILAEEWSCPMGLL

>gi568815574r:2686992_2887603|GENSCAN_predicted_CDS_9|351_bp
atgacagcaggggaccactaccaccaagatgcggagactggtagtggccccgaatgccag
gctacactgatatttattggatacaagacaaaggagcagggtaaggagtatgagccatct
ccaatgatagggtcgggaacctgtcagaggcgggcactggggccacagaacaacttgcca
gatgtcacccctgctcccaataccatctctgcactctgcaaccttggggacctgggaagg
cacccctcgtcccccaggatcaggctgtctgctcccactgccctctcctggctcccagag
cctgctccaatcctggctgaggagtggagctgccccatgggtctcctctga