FHC11334

Gene/Protein Characteristic Table for FHC11334

Species

human

Clone Name

pFN21AE0880 Sequence (with vector) Restriction Map

Product ID

FHC11334

Corresponding
Flexi Clone PID

FXC11334

ORF Sequence

DNA sequence (927 bp)
Protein sequence (309 aa)

Linker Type

Flexi type

The extra Val codon is attached to the 3'-end of the ORF, because a Pme I site ...

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB529296]

Gene

KIEE0880

Symbol

OR1A1

Alias : OR17-7

Description

olfactory receptor, family 1, subfamily A, member 1

Original Clone ID

cp01280

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

Cell image

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 927 bp
Restriction map A Restriction map B

Features of the protein sequence

Description

Length: 309 aa
Result of homology search against nr database ( FASTA output, Multiple alignment) Entry Exp ID% Protein Source AAH69169 1.3e-125 100.0 OR1A1 protein [... Homo sapiens Q9P1Q5 3.2e-125 99.6 Olfactory recep... Homo sapiens AAF37311 9.4e-125 99.3 olfactory recep... Homo sapiens Q9TUA7 5.9e-124 98.7 Olfactory recep... Pan troglodytes Q9TU92 8.1e-122 97.4 Olfactory recep... Gorilla gorilla... The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR000276 26 50 PR00237 Rhodopsin-like GPCR superfamily IPR000276 59 80 PR00237 Rhodopsin-like GPCR superfamily IPR000725 92 103 PR00245 Olfactory receptor IPR000276 104 126 PR00237 Rhodopsin-like GPCR superfamily IPR000725 129 141 PR00245 Olfactory receptor IPR000725 176 192 PR00245 Olfactory receptor IPR000276 198 221 PR00237 Rhodopsin-like GPCR superfamily IPR000725 235 244 PR00245 Olfactory receptor IPR000276 270 296 PR00237 Rhodopsin-like GPCR superfamily IPR000725 281 292 PR00245 Olfactory receptor HMMPfam IPR000276 41 288 PF00001 Rhodopsin-like GPCR superfamily ProfileScan IPR000276 41 288 PS50262 Rhodopsin-like GPCR superfamily
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 28 YILFLFIYPITLIGNLLIVLAIC 50 PRIMARY 23 2 60 YFLLANLSLVDIFFSSVTIPKML 82 SECONDARY 23 3 89 SKSISFGGCLTQMYFMIALGNT 110 SECONDARY 22 4 138 PRSCIWLIAGSWVIGNANALPHT 160 SECONDARY 23 5 201 LGVGIFSVPLLCIIVSYIRVFST 223 PRIMARY 23 6 233 VLKAFSTCGSHLTVVSLYYGTVM 255 SECONDARY 23 7 270 AVITVMYTAVTPMLNSFIYSLR 291 SECONDARY 22
Result of homology search against disease genes in OMIM database

(FASTA output, Multiple alignment)

H_id	H_len (aa)	OMIM_No.	ID (%)	Q_ali/Q_len (%)
NP_036492	312	603232	82.6	100.0
NP_002539	312	164342	80.0	98.7
NP_001005191	312	611538	76.8	98.7
NP_003688	314	608492	74.4	100.0
NP_835462	317	608493	69.8	98.7