PABPN1L ORF clone FHC11173

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone FHC11173

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Clone info.

Species

human

Clone Name

pFN21AE0573 Sequence (with vector) Restriction Map

Product ID

FHC11173

Flexi Clone PID

FXC11173

ORF Sequence

DNA sequence (867 bp)
Protein sequence (289 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB528852]

Gene

KIEE0573

Symbol

PABPN1L

Alias : PABPNL1, ePABP2

Description

poly(A) binding protein, nuclear 1-like (cytoplasmic)

Original Clone ID

oc01273

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

Cell image

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 867 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 289 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS45547.2 4.6e-76 96.8 PABPN1L CCDS73925.1 1.2e-52 76.8 PABPN1L CCDS9592.1 8.4e-20 46.2 PABPN1 CCDS55906.1 2e-19 51.3 PABPN1 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR000504 149 218 PF00076 RNA recognition motif domain HMMSmart IPR000504 148 220 SM00360 RNA recognition motif domain ProfileScan IPR000504 147 224 PS50102 RNA recognition motif domain
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_004634 306 164300,602279 46.2 80.6 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AE0573 Download

>KIEE0573  867 bp
ATGTGGCCCTTCCCGAGCCGCTCTCTCTTCCCACCCCCGACTCAGGCCTGGCTCCAGACG
GTCTCCTCAGACCCTGAGGCCCAGGGCTGGGGGGCCTGGAACGAGACCAAGGAGATTCTG
GGGCCAGAGGGTGGGGAAGGGAAGGAGGAGAAAGAGGAGGAAGAGGATGCAGAGGAAGAC
CAGGATGGGGATGCAGGCTTTCTGCTGTCTCTGCTGGAGCAAGAGAACCTGGCTGAGTGC
CCATTGCCTGACCAGGAGCTGGAGGCCATCAAGATGAAGGTGTGTGCCATGGAGCAGGCC
GAGGGGACGCCACGGCCTCCAGGAGTGCAGCAACAGGCCGAGGAAGAGGAGGGCACCGCG
GCCGGGCAGCTGCTGAGCCCTGAGACCGTGGGCTGCCCCCTCTCTGGGACCCCCGAGGAG
AAGGTGGAGGCTGACCACAGATCCGTCTACGTGGGCAACGTGGACTACGGGGGCTCCGCC
GAGGAGCTGGAGGCCCACTTCAGCCGCTGTGGGGAGGTCCACCGAGTCACGATCCTGTGT
GACAAGTTCTCTGGACACCCCAAGGGTTATGCCTACATAGAGTTTGCCACCAAGGGCTCC
GTGCAGGCCGCCGTGGAGCTGGACCAGAGCCTCTTCCGGGGCCGGGTCATCAAGGTGCTG
CCGAAAAGAACCAACTTCCCTGGGATCAGCTCCACAGACCGCGGGGGCCTTCGAGGACAC
CCAGGCTCCAGGGGGGCACCCTTCCCCCACAGCGGCCTCCAGGGCAGGCCCCGGCTCAGA
CCACAAGGGCAGAACCGGACGCCGGCGGCACTGACGCCACTATGGGCTCGGCCGCTGCCC
TGGGTGGTAGTCAGCCACGTCATCAAG

ORF Protein

Cloned ORF protein sequence for pFN21AE0573 Download

>KIEE0573  289 aa
MWPFPSRSLFPPPTQAWLQTVSSDPEAQGWGAWNETKEILGPEGGEGKEEKEEEEDAEED
QDGDAGFLLSLLEQENLAECPLPDQELEAIKMKVCAMEQAEGTPRPPGVQQQAEEEEGTA
AGQLLSPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILC
DKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGH
PGSRGAPFPHSGLQGRPRLRPQGQNRTPAALTPLWARPLPWVVVSHVIK

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AE0573 Download

>pFN21AE0573  5572 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGTGGCCCTTCCCGAGCCGCTCTCTCTTCCCACC
CCCGACTCAGGCCTGGCTCCAGACGGTCTCCTCAGACCCTGAGGCCCAGGGCTGGGGGGC
CTGGAACGAGACCAAGGAGATTCTGGGGCCAGAGGGTGGGGAAGGGAAGGAGGAGAAAGA
GGAGGAAGAGGATGCAGAGGAAGACCAGGATGGGGATGCAGGCTTTCTGCTGTCTCTGCT
GGAGCAAGAGAACCTGGCTGAGTGCCCATTGCCTGACCAGGAGCTGGAGGCCATCAAGAT
GAAGGTGTGTGCCATGGAGCAGGCCGAGGGGACGCCACGGCCTCCAGGAGTGCAGCAACA
GGCCGAGGAAGAGGAGGGCACCGCGGCCGGGCAGCTGCTGAGCCCTGAGACCGTGGGCTG
CCCCCTCTCTGGGACCCCCGAGGAGAAGGTGGAGGCTGACCACAGATCCGTCTACGTGGG
CAACGTGGACTACGGGGGCTCCGCCGAGGAGCTGGAGGCCCACTTCAGCCGCTGTGGGGA
GGTCCACCGAGTCACGATCCTGTGTGACAAGTTCTCTGGACACCCCAAGGGTTATGCCTA
CATAGAGTTTGCCACCAAGGGCTCCGTGCAGGCCGCCGTGGAGCTGGACCAGAGCCTCTT
CCGGGGCCGGGTCATCAAGGTGCTGCCGAAAAGAACCAACTTCCCTGGGATCAGCTCCAC
AGACCGCGGGGGCCTTCGAGGACACCCAGGCTCCAGGGGGGCACCCTTCCCCCACAGCGG
CCTCCAGGGCAGGCCCCGGCTCAGACCACAAGGGCAGAACCGGACGCCGGCGGCACTGAC
GCCACTATGGGCTCGGCCGCTGCCCTGGGTGGTAGTCAGCCACGTCATCAAGGTTTAAAC
GAATTCGGGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATC
CGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAAC
TAGCATAACCCCTTGGGGCGGCCGCTTCGAGCAGACATGATAAGATACATTGATGAGTTT
GGACAAACCACAACTAGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATTTGTGATGCT
ATTGCTTTATTTGTAACCATTATAAGCTGCAATAAACAAGTTAACAACAACAATTGCATT
CATTTTATGTTTCAGGTTCAGGGGGAGATGTGGGAGGTTTTTTTAAGCAAGTAAAACCTC
TACAAATGTGGTAAAATCGAATTCTAATGGATCCTCTTTGCGCTTGCGTTTTCCCTTGTC
CAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTC
TACGTAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCT
ATTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCATGAGACAATAACCCTGA
TAAATGCTTCAATAATATTGAAAAAGGAAGAGTATGAGTATTCAACATTTCCGTGTCGCC
CTTATTCCCTTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTG
AAAGTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTC
AACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACT
TTCAAAGTTCTGCTATGTGGCGCGGTATTATCCCGTATTGACGCCGGGCAAGAGCAACTC
GGTCGCCGCATACACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACAGAAAAG
CATCTTACGGATGGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGAT
AACACTGCGGCCAACTTACTTCTGACAACTATCGGAGGACCGAAGGAGCTAACCGCTTTT
TTGCACAACATGGGGGATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTGAATGAA
GCCATACCAAACGACGAGCGTGACACCACGATGCCTGTAGCAATGGCAACAACGTTGCGC
AAACTATTAACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATG
GAGGCGGATAAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATT
GCTGATAAATCTGGAGCCGGTGAGCGTGGGTCTCGCGGTATCATTGCAGCACTGGGGCCA
GATGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGAT
GAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAATTCGAA
ATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTAT
CCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCA
GGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGC
ATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACC
AGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCG
GATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTA
GGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCG
TTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGAC
ACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAG
GCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTAT
TTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGAT
CCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGC
GCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGT
GGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCT
AGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGG
TGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCT
CTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCG
GGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCG
GTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAG
ATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCT