TBC1D2 ORF clone FHC09269

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone FHC09269

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Clone info.

Species

human

Clone Name

pFN21AE3916 Sequence (with vector) Restriction Map

Product ID

FHC09269

ORF Sequence

DNA sequence (1404 bp)
Protein sequence (468 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

Gene

KIEE3916

Symbol

TBC1D2

Alias : PARIS-1, PARIS1, TBC1D2A

Description

TBC1 domain family, member 2, transcript variant 3

Original Clone ID

cp93916

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1404 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 468 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS59137.1 2.4e-189 100.0 TBC1D2 CCDS75865.1 4.5e-189 100.0 TBC1D2 CCDS35080.1 1.4e-145 97.6 TBC1D2 CCDS45314.1 8.4e-88 49.7 TBC1D2B CCDS32301.2 1.8e-78 50.5 TBC1D2B The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR000195 169 377 PF00566 Rab-GAP/TBC domain HMMSmart IPR000195 162 380 SM00164 Rab-GAP/TBC domain ProfileScan IPR000195 165 357 PS50086 Rab-GAP/TBC domain
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 327 LVTFNWFLVVFADSLISNILLRV 349 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_001254501 468 609871 100.0 100.0 XP_011517145 468 609871 100.0 100.0 XP_016870388 483 609871 100.0 100.0 NP_001254500 928 609871 100.0 100.0 NP_060891 917 609871 97.6 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AE3916 Download

>KIEE3916  1404 bp
ATGGAAGCTTACCGGACCCAGAACTGCTTCCTCAACTCCGAGATCCACCAGGTCACAAAG
ATCTGGAGAAAGGTGGCTGAGAAGGAGAAGGCCCTTCTGACGAAGTGCGCCTACCTCCAA
GCCAGAAACTGCCAGGTGGAAAGCAAGTACCTGGCCGGTCTGAGAAGGCTGCAGGAGGCC
CTGGGGGACGAAGCCAGCGAGTGCTCAGAGCTGCTGAGGCAGCTTGTCCAGGAGGCACTG
CAGTGGGAAGCTGGGGAGGCCTCATCTGACAGCATCGAGCTGAGCCCCATCAGTAAGTAT
GATGAGTACGGCTTCCTGACGGTGCCCGACTATGAGGTGGAAGACCTGAAGCTGCTGGCC
AAGATCCAGGCGTTGGAGTCACGATCCCACCACCTGCTGGGCCTCGAGGCTGTGGATCGG
CCGCTGAGGGAGCGCTGGGCTGCCCTGGGCGATCTTGTGCCCTCAGCCGAGCTCAAGCAG
CTACTGCGGGCAGGAGTACCCCGTGAACACCGGCCTCGTGTCTGGAGGTGGCTGGTCCAC
CTCCGTGTCCAGCACCTGCACACTCCAGGCTGCTACCAGGAACTGCTGAGCCGGGGCCAG
GCCCGCGAGCACCCTGCTGCCCGCCAGATTGAGCTGGACCTGAACCGGACCTTCCCCAAC
AACAAACACTTCACCTGCCCCACCTCCAGCTTCCCCGACAAGCTCCGCCGGGTGCTGCTG
GCCTTCTCCTGGCAGAACCCCACCATCGGCTACTGCCAGGGCCTGAACAGGCTGGCGGCC
ATTGCCCTGCTGGTCCTAGAGGAGGAGGAGAGCGCCTTCTGGTGCCTGGTGGCCATTGTG
GAGACCATCATGCCCGCTGATTACTACTGCAACACGCTGACGGCATCCCAGGTGGACCAG
CGGGTGCTCCAGGACCTGCTCTCGGAGAAGCTGCCCAGGCTGATGGCCCATCTGGGGCAG
CACCACGTGGATCTCTCCCTCGTCACCTTCAACTGGTTCCTCGTGGTCTTTGCGGACAGT
CTCATTAGCAACATCCTCCTTCGGGTCTGGGATGCCTTCCTGTACGAGGGGACGAAGGTG
GTGTTTCGCTATGCCTTGGCCATTTTCAAGTACAACGAGAAGGAGATCTTGAGGCTACAG
AATGGCCTGGAAATCTACCAGTACCTGCGCTTCTTCACCAAGACCATCTCCAACAGCCGG
AAGCTGATGAACATCGCCTTCAATGACATGAACCCCTTCCGCATGAAACAGCTGCGGCAG
CTGCGCATGGTCCACCGGGAGCGGCTGGAGGCTGAGCTGCGGGAGCTGGAGCAGCTTAAG
GCAGAGTACCTGGAGAGGCGGGCATCCCGGCGCAGAGCTGTGTCCGAGGGCTGTGCCAGC
GAGGACGAGGTGGAGGGGGAAGCC

ORF Protein

Cloned ORF protein sequence for pFN21AE3916 Download

>KIEE3916  468 aa
MEAYRTQNCFLNSEIHQVTKIWRKVAEKEKALLTKCAYLQARNCQVESKYLAGLRRLQEA
LGDEASECSELLRQLVQEALQWEAGEASSDSIELSPISKYDEYGFLTVPDYEVEDLKLLA
KIQALESRSHHLLGLEAVDRPLRERWAALGDLVPSAELKQLLRAGVPREHRPRVWRWLVH
LRVQHLHTPGCYQELLSRGQAREHPAARQIELDLNRTFPNNKHFTCPTSSFPDKLRRVLL
AFSWQNPTIGYCQGLNRLAAIALLVLEEEESAFWCLVAIVETIMPADYYCNTLTASQVDQ
RVLQDLLSEKLPRLMAHLGQHHVDLSLVTFNWFLVVFADSLISNILLRVWDAFLYEGTKV
VFRYALAIFKYNEKEILRLQNGLEIYQYLRFFTKTISNSRKLMNIAFNDMNPFRMKQLRQ
LRMVHRERLEAELRELEQLKAEYLERRASRRRAVSEGCASEDEVEGEA

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AE3916 Download

>pFN21AE3916  6109 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGGAAGCTTACCGGACCCAGAACTGCTTCCTCAA
CTCCGAGATCCACCAGGTCACAAAGATCTGGAGAAAGGTGGCTGAGAAGGAGAAGGCCCT
TCTGACGAAGTGCGCCTACCTCCAAGCCAGAAACTGCCAGGTGGAAAGCAAGTACCTGGC
CGGTCTGAGAAGGCTGCAGGAGGCCCTGGGGGACGAAGCCAGCGAGTGCTCAGAGCTGCT
GAGGCAGCTTGTCCAGGAGGCACTGCAGTGGGAAGCTGGGGAGGCCTCATCTGACAGCAT
CGAGCTGAGCCCCATCAGTAAGTATGATGAGTACGGCTTCCTGACGGTGCCCGACTATGA
GGTGGAAGACCTGAAGCTGCTGGCCAAGATCCAGGCGTTGGAGTCACGATCCCACCACCT
GCTGGGCCTCGAGGCTGTGGATCGGCCGCTGAGGGAGCGCTGGGCTGCCCTGGGCGATCT
TGTGCCCTCAGCCGAGCTCAAGCAGCTACTGCGGGCAGGAGTACCCCGTGAACACCGGCC
TCGTGTCTGGAGGTGGCTGGTCCACCTCCGTGTCCAGCACCTGCACACTCCAGGCTGCTA
CCAGGAACTGCTGAGCCGGGGCCAGGCCCGCGAGCACCCTGCTGCCCGCCAGATTGAGCT
GGACCTGAACCGGACCTTCCCCAACAACAAACACTTCACCTGCCCCACCTCCAGCTTCCC
CGACAAGCTCCGCCGGGTGCTGCTGGCCTTCTCCTGGCAGAACCCCACCATCGGCTACTG
CCAGGGCCTGAACAGGCTGGCGGCCATTGCCCTGCTGGTCCTAGAGGAGGAGGAGAGCGC
CTTCTGGTGCCTGGTGGCCATTGTGGAGACCATCATGCCCGCTGATTACTACTGCAACAC
GCTGACGGCATCCCAGGTGGACCAGCGGGTGCTCCAGGACCTGCTCTCGGAGAAGCTGCC
CAGGCTGATGGCCCATCTGGGGCAGCACCACGTGGATCTCTCCCTCGTCACCTTCAACTG
GTTCCTCGTGGTCTTTGCGGACAGTCTCATTAGCAACATCCTCCTTCGGGTCTGGGATGC
CTTCCTGTACGAGGGGACGAAGGTGGTGTTTCGCTATGCCTTGGCCATTTTCAAGTACAA
CGAGAAGGAGATCTTGAGGCTACAGAATGGCCTGGAAATCTACCAGTACCTGCGCTTCTT
CACCAAGACCATCTCCAACAGCCGGAAGCTGATGAACATCGCCTTCAATGACATGAACCC
CTTCCGCATGAAACAGCTGCGGCAGCTGCGCATGGTCCACCGGGAGCGGCTGGAGGCTGA
GCTGCGGGAGCTGGAGCAGCTTAAGGCAGAGTACCTGGAGAGGCGGGCATCCCGGCGCAG
AGCTGTGTCCGAGGGCTGTGCCAGCGAGGACGAGGTGGAGGGGGAAGCCGTTTAAACGAA
TTCGGGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGG
CTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAG
CATAACCCCTTGGGGCGGCCGCTTCGAGCAGACATGATAAGATACATTGATGAGTTTGGA
CAAACCACAACTAGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATTTGTGATGCTATT
GCTTTATTTGTAACCATTATAAGCTGCAATAAACAAGTTAACAACAACAATTGCATTCAT
TTTATGTTTCAGGTTCAGGGGGAGATGTGGGAGGTTTTTTTAAGCAAGTAAAACCTCTAC
AAATGTGGTAAAATCGAATTCTAATGGATCCTCTTTGCGCTTGCGTTTTCCCTTGTCCAG
ATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTAC
GTAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATT
TGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCATGAGACAATAACCCTGATAA
ATGCTTCAATAATATTGAAAAAGGAAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTT
ATTCCCTTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAA
GTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAAC
AGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTC
AAAGTTCTGCTATGTGGCGCGGTATTATCCCGTATTGACGCCGGGCAAGAGCAACTCGGT
CGCCGCATACACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCAT
CTTACGGATGGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAAC
ACTGCGGCCAACTTACTTCTGACAACTATCGGAGGACCGAAGGAGCTAACCGCTTTTTTG
CACAACATGGGGGATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCC
ATACCAAACGACGAGCGTGACACCACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAA
CTATTAACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAG
GCGGATAAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCT
GATAAATCTGGAGCCGGTGAGCGTGGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGAT
GGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAA
CGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAATTCGAAATG
ACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCA
CAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGA
ACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATC
ACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGG
CGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGAT
ACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGT
ATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTC
AGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACG
ACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCG
GTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTG
GTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCG
GCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCA
GAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGA
ACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGA
TCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGA
AACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTG
GTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGT
GGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTG
CGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATA
AACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCT