PTBP2 ORF clone FHC08847

KOP
KOP HaloTag ORF List Flexi search

Halotag ORF Clone FHC08847

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Clone info.

Species

human

Clone Name

pFN21AE4508 Sequence (with vector) Restriction Map

Product ID

FHC08847

ORF Sequence

DNA sequence (1596 bp)
Protein sequence (532 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

Gene

KIEE4508

Symbol

PTBP2

Alias : PTBLP, brPTB, nPTB

Description

polypyrimidine tract binding protein 2, transcript variant 5

Original Clone ID

oc94508

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1596 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 532 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS72830.1 3.3e-166 100.0 PTBP2 CCDS754.1 3e-165 99.8 PTBP2 CCDS72828.1 3.4e-165 99.1 PTBP2 CCDS72829.1 3.1e-164 98.9 PTBP2 CCDS32859.1 2e-126 75.0 PTBP1 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR000504 183 247 PF00076 RNA recognition motif domain IPR000504 340 405 PF00076 RNA recognition motif domain IPR000504 459 519 PF00076 RNA recognition motif domain HMMSmart IPR000504 60 129 SM00360 RNA recognition motif domain IPR000504 182 251 SM00360 RNA recognition motif domain IPR000504 339 408 SM00360 RNA recognition motif domain IPR000504 456 526 SM00360 RNA recognition motif domain HMMTigr IPR006536 57 532 TIGR01649 HnRNP-L/PTB/hephaestus splicing factor ProfileScan IPR000504 59 133 PS50102 RNA recognition motif domain IPR000504 181 257 PS50102 RNA recognition motif domain IPR000504 338 412 PS50102 RNA recognition motif domain IPR000504 455 530 PS50102 RNA recognition motif domain
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_001287918 532 608449 100.0 100.0 NP_067013 531 608449 99.8 100.0 NP_001287914 537 608449 99.1 100.0 NP_001287915 540 608449 100.0 99.4 NP_001287917 536 608449 98.9 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AE4508 Download

>KIEE4508  1596 bp
ATGGACGGAATCGTCACTGAGGTTGCAGTTGGCGTGAAGAGAGGATCTGACGAACTACTC
TCAGGCAGTGTTCTCAGTAGTCCGAACTCTAATATGAGCAGCATGGTAGTTACAGCCAAT
GGTAATGATAGTAAAAAATTTAAAGGAGAAGATAAAATGGATGGTGCTCCTTCTCGTGTA
CTTCATATTCGAAAATTACCTGGGGAAGTAACAGAAACTGAAGTTATTGCTTTAGGCTTA
CCTTTTGGTAAGGTGACCAACATCCTTATGCTGAAAGGAAAAAATCAGGCATTTTTGGAA
CTAGCAACCGAGGAAGCAGCTATTACTATGGTTAATTACTATTCTGCTGTGACACCTCAT
CTTCGTAACCAACCAATATATATCCAGTACTCGAATCACAAAGAACTAAAGACAGATAAT
ACATTAAACCAACGTGCTCAGGCAGTTCTTCAAGCTGTGACAGCTGTCCAGACAGCAAAT
ACTCCTCTTAGTGGCACCACAGTTAGCGAGAGTGCAGTGACTCCAGCCCAGAGTCCAGTA
CTTAGAATAATTATTGACAACATGTACTACCCTGTAACACTTGATGTTCTTCACCAAATA
TTTTCTAAGTTTGGTGCTGTATTGAAGATAATCACATTTACAAAAAATAACCAGTTTCAA
GCTTTGCTCCAGTATGGTGATCCAGTAAATGCTCAACAAGCAAAACTAGCCCTAGATGGT
CAGAATATTTATAATGCCTGCTGTACCCTAAGGATTGATTTTTCCAAACTTGTGAATTTG
AATGTAAAATACAACAATGATAAAAGTAGGGATTATACTCGACCTGATCTTCCATCTGGG
GATGGACAACCTGCATTGGACCCAGCTATTGCTGCAGCATTTGCCAAGGAGACATCCCTC
TTAGCTGTTCCAGGAGCTCTGAGTCCTTTGGCCATTCCAAATGCTGCTGCAGCAGCTGCT
GCAGCTGCTGCTGGCCGAGTGGGTATGCCTGGAGTCTCAGCTGGTGGCAATACAGTCCTG
TTGGTTAGCAATTTAAATGAAGAGATGGTTACGCCCCAAAGTCTGTTTACCCTCTTCGGT
GTTTATGGAGATGTGCAGCGTGTGAAGATTTTATACAATAAGAAAGACAGCGCTCTAATA
CAGATGGCTGATGGAAACCAATCACAACTTGCCATGAATCATCTTAATGGACAGAAAATG
TATGGAAAAATTATTCGTGTTACTCTGTCTAAACATCAGACTGTACAGCTACCTCGAGAG
GGACTTGATGATCAAGGGCTAACAAAAGATTTTGGTAATTCCCCATTGCATCGTTTTAAG
AAACCTGGATCCAAAAATTTTCAAAACATTTTTCCTCCTTCTGCCACCCTTCACCTATCT
AATATCCCTCCATCAGTAGCAGAAGAGGATCTACGAACACTGTTCGCTAACACTGGGGGC
ACTGTGAAAGCATTTAAGTTTTTTCAAAGAGATCACAAAATGGCTCTTCTTCAGATGGCA
ACAGTGGAAGAAGCTATTCAGGCCTTGATTGATCTTCATAATTATAACCTTGGAGAAAAC
CATCATCTGAGAGTGTCTTTCTCCAAGTCAACAATT

ORF Protein

Cloned ORF protein sequence for pFN21AE4508 Download

>KIEE4508  532 aa
MDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVTANGNDSKKFKGEDKMDGAPSRV
LHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPH
LRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQSPV
LRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDG
QNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSL
LAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNLNEEMVTPQSLFTLFG
VYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPRE
GLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGG
TVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AE4508 Download

>pFN21AE4508  6301 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGGACGGAATCGTCACTGAGGTTGCAGTTGGCGT
GAAGAGAGGATCTGACGAACTACTCTCAGGCAGTGTTCTCAGTAGTCCGAACTCTAATAT
GAGCAGCATGGTAGTTACAGCCAATGGTAATGATAGTAAAAAATTTAAAGGAGAAGATAA
AATGGATGGTGCTCCTTCTCGTGTACTTCATATTCGAAAATTACCTGGGGAAGTAACAGA
AACTGAAGTTATTGCTTTAGGCTTACCTTTTGGTAAGGTGACCAACATCCTTATGCTGAA
AGGAAAAAATCAGGCATTTTTGGAACTAGCAACCGAGGAAGCAGCTATTACTATGGTTAA
TTACTATTCTGCTGTGACACCTCATCTTCGTAACCAACCAATATATATCCAGTACTCGAA
TCACAAAGAACTAAAGACAGATAATACATTAAACCAACGTGCTCAGGCAGTTCTTCAAGC
TGTGACAGCTGTCCAGACAGCAAATACTCCTCTTAGTGGCACCACAGTTAGCGAGAGTGC
AGTGACTCCAGCCCAGAGTCCAGTACTTAGAATAATTATTGACAACATGTACTACCCTGT
AACACTTGATGTTCTTCACCAAATATTTTCTAAGTTTGGTGCTGTATTGAAGATAATCAC
ATTTACAAAAAATAACCAGTTTCAAGCTTTGCTCCAGTATGGTGATCCAGTAAATGCTCA
ACAAGCAAAACTAGCCCTAGATGGTCAGAATATTTATAATGCCTGCTGTACCCTAAGGAT
TGATTTTTCCAAACTTGTGAATTTGAATGTAAAATACAACAATGATAAAAGTAGGGATTA
TACTCGACCTGATCTTCCATCTGGGGATGGACAACCTGCATTGGACCCAGCTATTGCTGC
AGCATTTGCCAAGGAGACATCCCTCTTAGCTGTTCCAGGAGCTCTGAGTCCTTTGGCCAT
TCCAAATGCTGCTGCAGCAGCTGCTGCAGCTGCTGCTGGCCGAGTGGGTATGCCTGGAGT
CTCAGCTGGTGGCAATACAGTCCTGTTGGTTAGCAATTTAAATGAAGAGATGGTTACGCC
CCAAAGTCTGTTTACCCTCTTCGGTGTTTATGGAGATGTGCAGCGTGTGAAGATTTTATA
CAATAAGAAAGACAGCGCTCTAATACAGATGGCTGATGGAAACCAATCACAACTTGCCAT
GAATCATCTTAATGGACAGAAAATGTATGGAAAAATTATTCGTGTTACTCTGTCTAAACA
TCAGACTGTACAGCTACCTCGAGAGGGACTTGATGATCAAGGGCTAACAAAAGATTTTGG
TAATTCCCCATTGCATCGTTTTAAGAAACCTGGATCCAAAAATTTTCAAAACATTTTTCC
TCCTTCTGCCACCCTTCACCTATCTAATATCCCTCCATCAGTAGCAGAAGAGGATCTACG
AACACTGTTCGCTAACACTGGGGGCACTGTGAAAGCATTTAAGTTTTTTCAAAGAGATCA
CAAAATGGCTCTTCTTCAGATGGCAACAGTGGAAGAAGCTATTCAGGCCTTGATTGATCT
TCATAATTATAACCTTGGAGAAAACCATCATCTGAGAGTGTCTTTCTCCAAGTCAACAAT
TGTTTAAACGAATTCGGGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGC
AAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTG
AGCAATAACTAGCATAACCCCTTGGGGCGGCCGCTTCGAGCAGACATGATAAGATACATT
GATGAGTTTGGACAAACCACAACTAGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATT
TGTGATGCTATTGCTTTATTTGTAACCATTATAAGCTGCAATAAACAAGTTAACAACAAC
AATTGCATTCATTTTATGTTTCAGGTTCAGGGGGAGATGTGGGAGGTTTTTTTAAGCAAG
TAAAACCTCTACAAATGTGGTAAAATCGAATTCTAATGGATCCTCTTTGCGCTTGCGTTT
TCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGA
CTGGCTTTCTACGTAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGC
GGAACCCCTATTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCATGAGACAA
TAACCCTGATAAATGCTTCAATAATATTGAAAAAGGAAGAGTATGAGTATTCAACATTTC
CGTGTCGCCCTTATTCCCTTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAA
ACGCTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAA
CTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATG
ATGAGCACTTTCAAAGTTCTGCTATGTGGCGCGGTATTATCCCGTATTGACGCCGGGCAA
GAGCAACTCGGTCGCCGCATACACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTC
ACAGAAAAGCATCTTACGGATGGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACC
ATGAGTGATAACACTGCGGCCAACTTACTTCTGACAACTATCGGAGGACCGAAGGAGCTA
ACCGCTTTTTTGCACAACATGGGGGATCATGTAACTCGCCTTGATCGTTGGGAACCGGAG
CTGAATGAAGCCATACCAAACGACGAGCGTGACACCACGATGCCTGTAGCAATGGCAACA
ACGTTGCGCAAACTATTAACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATA
GACTGGATGGAGGCGGATAAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGC
TGGTTTATTGCTGATAAATCTGGAGCCGGTGAGCGTGGGTCTCGCGGTATCATTGCAGCA
CTGGGGCCAGATGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCA
ACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGG
TAATTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAA
TACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGC
AAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCC
CTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTAT
AAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGC
CGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCT
CACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACG
AACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACC
CGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGA
GGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAA
GGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTA
GCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGC
AGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTG
ACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGA
TCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCG
CTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGC
CTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGC
AGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGC
GTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTA
GCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATC
T