POU1F1 ORF clone FXC11948

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Flexi ORF Clone FXC11948

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Clone info.

Species

human

Clone Name

pF1KB9698 Sequence (with vector) Restriction Map

Product ID

FXC11948

HaloTag Clone PID

FHC11948

ORF Sequence

DNA sequence (873 bp)
Protein sequence (291 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB587506]

Gene

KIBB9698

Symbol

POU1F1

Alias : CPHD1, GHF-1, PIT1, POU1F1a, Pit-1

Description

POU class 1 homeobox 1, transcript variant alpha

Original Clone ID

cp00281

Features of the cloned ORF sequence

Description

Length: 873 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 291 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS2919.1 1.1e-93 100.0 POU1F1 CCDS46873.1 1.6e-79 91.8 POU1F1 CCDS5040.1 1.7e-26 47.0 POU3F2 CCDS33265.1 6.9e-26 50.0 POU3F3 CCDS14450.1 8e-26 43.9 POU3F4 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR013847 143 160 PR00028 POU IPR013847 166 179 PR00028 POU IPR013847 182 197 PR00028 POU IPR013847 213 233 PR00028 POU IPR013847 248 263 PR00028 POU HMMPfam IPR000327 125 198 PF00157 POU-specific IPR001356 215 271 PF00046 Homeobox HMMSmart IPR000327 124 198 SM00352 POU-specific IPR001356 214 276 SM00389 Homeobox ProfileScan IPR000327 124 198 PS51179 POU-specific IPR001356 212 272 PS50071 Homeobox
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_000297 291 173110,613038 100.0 100.0 NP_001116229 317 173110,613038 91.8 100.0 NP_005595 443 600494 47.0 83.5 NP_000298 361 300039,304400 43.9 87.6 XP_016872976 356 607394 40.0 83.5 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB9698 Download

>KIBB9698  873 bp
ATGAGTTGCCAAGCTTTTACTTCGGCTGATACCTTTATACCTCTGAATTCTGACGCCTCT
GCAACTCTGCCTCTGATAATGCATCACAGTGCTGCCGAGTGTCTACCAGTCTCCAACCAT
GCCACCAATGTGATGTCTACAGCAACAGGACTTCATTATTCTGTTCCTTCCTGTCATTAT
GGAAACCAGCCATCAACCTATGGAGTGATGGCAGGTAGTTTAACCCCTTGTCTTTATAAA
TTTCCTGACCACACCTTGAGTCATGGATTTCCTCCTATACACCAGCCTCTTCTGGCAGAG
GACCCCACAGCTGCTGATTTCAAGCAGGAACTCAGGCGGAAAAGTAAATTGGTGGAAGAG
CCAATAGACATGGATTCTCCAGAAATCAGAGAACTTGAAAAGTTTGCCAATGAATTTAAA
GTGAGACGAATTAAATTAGGATACACCCAGACAAATGTTGGGGAGGCCCTGGCAGCTGTG
CATGGCTCTGAATTCAGTCAAACAACAATCTGCCGATTTGAAAATCTGCAGCTCAGCTTT
AAAAATGCATGCAAACTGAAAGCAATATTATCCAAATGGCTGGAGGAAGCTGAGCAAGTA
GGAGCTTTGTACAATGAAAAAGTGGGAGCAAATGAAAGGAAAAGAAAACGAAGAACAACT
ATAAGCATTGCTGCTAAAGATGCTCTGGAGAGACACTTTGGAGAACAGAATAAACCTTCT
TCTCAAGAGATCATGAGGATGGCTGAAGAACTGAATCTGGAGAAAGAAGTAGTAAGAGTT
TGGTTTTGCAACCGGAGGCAGAGAGAAAAACGGGTGAAAACAAGTCTGAATCAGAGTTTA
TTTTCTATTTCTAAGGAACATCTTGAGTGCAGA

ORF Protein

Cloned ORF protein sequence for pF1KB9698 Download

>KIBB9698  291 aa
MSCQAFTSADTFIPLNSDASATLPLIMHHSAAECLPVSNHATNVMSTATGLHYSVPSCHY
GNQPSTYGVMAGSLTPCLYKFPDHTLSHGFPPIHQPLLAEDPTAADFKQELRRKSKLVEE
PIDMDSPEIRELEKFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSF
KNACKLKAILSKWLEEAEQVGALYNEKVGANERKRKRRTTISIAAKDALERHFGEQNKPS
SQEIMRMAEELNLEKEVVRVWFCNRRQREKRVKTSLNQSLFSISKEHLECR

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB9698 Download

>pF1KB9698  3986 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGAGTTGCCAA
GCTTTTACTTCGGCTGATACCTTTATACCTCTGAATTCTGACGCCTCTGCAACTCTGCCT
CTGATAATGCATCACAGTGCTGCCGAGTGTCTACCAGTCTCCAACCATGCCACCAATGTG
ATGTCTACAGCAACAGGACTTCATTATTCTGTTCCTTCCTGTCATTATGGAAACCAGCCA
TCAACCTATGGAGTGATGGCAGGTAGTTTAACCCCTTGTCTTTATAAATTTCCTGACCAC
ACCTTGAGTCATGGATTTCCTCCTATACACCAGCCTCTTCTGGCAGAGGACCCCACAGCT
GCTGATTTCAAGCAGGAACTCAGGCGGAAAAGTAAATTGGTGGAAGAGCCAATAGACATG
GATTCTCCAGAAATCAGAGAACTTGAAAAGTTTGCCAATGAATTTAAAGTGAGACGAATT
AAATTAGGATACACCCAGACAAATGTTGGGGAGGCCCTGGCAGCTGTGCATGGCTCTGAA
TTCAGTCAAACAACAATCTGCCGATTTGAAAATCTGCAGCTCAGCTTTAAAAATGCATGC
AAACTGAAAGCAATATTATCCAAATGGCTGGAGGAAGCTGAGCAAGTAGGAGCTTTGTAC
AATGAAAAAGTGGGAGCAAATGAAAGGAAAAGAAAACGAAGAACAACTATAAGCATTGCT
GCTAAAGATGCTCTGGAGAGACACTTTGGAGAACAGAATAAACCTTCTTCTCAAGAGATC
ATGAGGATGGCTGAAGAACTGAATCTGGAGAAAGAAGTAGTAAGAGTTTGGTTTTGCAAC
CGGAGGCAGAGAGAAAAACGGGTGAAAACAAGTCTGAATCAGAGTTTATTTTCTATTTCT
AAGGAACATCTTGAGTGCAGAGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTA
GAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGA
GTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGT
CTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAAC
CGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCT
TGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTT
CTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTT
GCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAG
CCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCA
AGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCAC
GCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACA
ATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTT
GTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCG
TGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGA
AGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCT
CCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCG
GCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATG
GAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCC
GAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCAT
GGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGAC
TGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATT
GCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCT
CCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTC
TGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGT
AATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCA
GCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCC
CCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACT
ATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCT
GCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAG
CTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCA
CGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAA
CCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGC
GAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAG
AAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGG
TAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCA
GCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTC
TGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAG
GATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTT
CGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTG
GCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCG
GCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAAC
GCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCG
TAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGA
TCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTT
GCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACG
CCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATC
AAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGG
TGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAAC
GGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGA
AGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAA
ATACATTCAAATATGTATCCGCTCAT