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SpecieshumanProduct IDFXC11931Cloning SiteSgfI-PmeIGeneKIEE1071SymbolLRCH2
Alias : dA204F4.4Descriptionleucine-rich repeats and calponin homology (CH) domain containing 2, transcript variant 1Original Clone IDcs99013
Length: 2295 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 765 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS48155.1 9.4e-150 100.0 LRCH2 CCDS59175.1 2e-113 97.8 LRCH2 CCDS3330.1 1.4e-32 41.9 LRCH3 CCDS53866.1 1.6e-28 49.0 LRCH1 CCDS31972.1 1.7e-28 47.3 LRCH1
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition HMMPfam IPR001611 136 156 PF00560 Leucine-rich repeat IPR001611 159 177 PF00560 Leucine-rich repeat IPR001611 181 201 PF00560 Leucine-rich repeat IPR001611 226 247 PF00560 Leucine-rich repeat IPR001715 663 751 PF00307 Calponin homology domain HMMSmart IPR003591 133 155 SM00369 Leucine-rich repeat IPR003591 156 179 SM00369 Leucine-rich repeat NULL 156 175 SM00364 NULL IPR003591 181 201 SM00369 Leucine-rich repeat NULL 181 197 SM00364 NULL NULL 201 220 SM00364 NULL IPR003591 224 247 SM00369 Leucine-rich repeat NULL 224 243 SM00364 NULL IPR003591 269 292 SM00369 Leucine-rich repeat IPR001715 648 751 SM00033 Calponin homology domain ProfileScan IPR001611 112 133 PS51450 Leucine-rich repeat IPR001611 135 156 PS51450 Leucine-rich repeat IPR001611 158 179 PS51450 Leucine-rich repeat IPR001611 180 201 PS51450 Leucine-rich repeat IPR001611 203 224 PS51450 Leucine-rich repeat IPR001611 226 248 PS51450 Leucine-rich repeat IPR001611 249 269 PS51450 Leucine-rich repeat IPR001611 271 292 PS51450 Leucine-rich repeat IPR001715 642 755 PS50021 Calponin homology domain
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_001157685 696 610368 49.1 95.6 NP_055931 728 610368 47.4 94.9 NP_001157683 763 610368 45.9 94.9 XP_016875972 731 610368 47.4 95.6 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KE1071 Download>KIEE1071 2295 bp ATGGCGGCGAGTCAGGGAGGAGGCGGTAACAGTGGGGGCGGCGGTTGTGGTGGAGGTGGA AGTAGCGGTGGCTGTGGCACGGCTGGAGGGGGAGGTGGCGGGGCTGGAGGGGGAGGCGGC GGCGGCGGCGGGACCCTGGTGGTCCCCATCCCGGTACCGACTCTTTTCGGTCAGCCGTTC CCCAACGGGCCGCCGTGGAACCCGGGGAGCCTGCAGCCTCAGCACACCGTGAGGAGCCTG GACCGGGCCCTGGAAGAGGCGGGCAGCTCCGGCATCCTGAGCCTCAGTGGTCGGAAACTC CGAGACTTCCCGGGCAGCGGCTACGACCTGACGGACACCACCCAAGCAGATCTTTCCAGA AATCGTTTTACAGAAATTCCTTCTGATGTCTGGTTATTTGCACCCCTTGAAACATTAAAT TTATATCATAATTGCATCAAAACCATTCCTGAAGCCATTAAAAATCTGCAGATGTTAACA TACCTTAACATTAGCCGAAATCTTTTATCAACATTGCCAAAATACCTATTTGATCTTCCC CTTAAAGTTTTGGTCGTCAGTAATAATAAACTGGTATCCATTCCAGAAGAAATTGGGAAG TTAAAAGATTTAATGGAATTGGATATTAGCTGCAATGAGATTCAAGTCCTTCCCCAACAA ATGGGAAAATTACATTCACTTAGAGAGCTAAATATAAGAAGAAATAATCTTCATGTTTTG CCAGATGAATTAGGAGACCTTCCCTTAGTCAAGCTGGATTTCTCTTGTAATAAAGTGACC GAAATTCCAGTTTGTTACAGAAAGCTGCATCATTTACAAGTAATAATTTTGGATAACAAT CCATTGCAAGTACCACCAGCACAGATATGTTTAAAGGGTAAGGTGCACATATTTAAGTAC TTAAATATTCAAGCATGTTGCAGAATGGATAAGAAACCAGATTCCCTGGATCTTCCATCA TTGAGTAAACGAATGCCCTCACAGCCTCTCACAGACAGTATGGAAGATTTTTATCCAAAT AAAAATCATGGCCCTGACTCTGGAATTGGAAGTGATAATGGAGAGAAACGATTATCCACA ACAGAACCATCAGATGATGACACAGTCAGCCTTCATTCTCAAGTCTCAGAATCAAATAGA GAGCAGACATCAAGAAATGACAGTCACATAATAGGAAGTAAGACTGATTCTCAGAAAGAC CAGGAGGTATATGATTTTGTTGACCCCAACACAGAAGATGTAGCAGTTCCTGAACAGGGA AATGCACATATTGGATCATTTGTATCATTCTTTAAGGGAAAAGAAAAATGTTCTGAAAAA TCTCGGAAAAATGAAGAATTAGGAGATGAAAAAAGACTTGAGAAAGAACAGTTACTGGCA GAGGAAGAGGATGATGATTTGAAGGAAGTAACTGATTTGAGGAAAATAGCTGCTCAGTTA TTGCAGCAAGAACAGAAGAACAGGATTCTTAATCATTCAACTTCTGTGATGAGAAACAAG CCAAAACAAACTGTGGAATGTGAAAAGAGTGTCTCAGCAGATGAAGTTAATTCACCATTA TCACCCCTCACCTGGCAGCCCTTAGAAAATCAGAAGGATCAAATAGATGAACAACCGTGG CCAGAATCTCACCCTATAATCTGGCAGAGTGAAGAAAGGAGGCGGAGCAAACAGATTAGA AAAGAATATTTCAAGTATAAATCAATGAGGAAGAGTTCAAGTGGCAATGAAAATGATGAG CAAGACAGTGATAATGCTAATATGTCAACACAATCTCCAGTATCATCTGAGGAATATGAC AGAACTGATGGTTTTTCACACAGTCCCTTTGGCTTGAAGCCTAGATCAGCTTTTAGCCGC TCATCTCGCCAAGAATATGGGGCAGCAGATCCAGGATTTACAATGAGAAGAAAGATGGAA CATTTACGGGAAGAGCGAGAGCAAATACGACAACTTCGCAACAATCTTGAATCCAGGTTA AAAGTAATTTTGCCTGATGACATTGGAGCTGCACTGATGGATGGGGTTGTTCTTTGCCAT TTAGCCAATCATATAAGGCCACGTTCTGTTGCTAGTATTCATGTACCATCACCAGCAGTG CCCAAACTGAGCATGGCAAAATGTCGAAGAAATGTAGAAAATTTTCTTGATGCTTGTAAA AAGTTGGGTGTCTCACAGGAAAGACTTTGTTTGCCTCATCATATTTTGGAAGAACGAGGA CTTGTGAAAGTTGGTGTCACAGTTCAGGCGCTCCTTGAATTACCAACAACCAAGGCATCT CAGCTTTCTGTGGCT
Cloned ORF protein sequence for pF1KE1071 Download>KIEE1071 765 aa MAASQGGGGNSGGGGCGGGGSSGGCGTAGGGGGGAGGGGGGGGGTLVVPIPVPTLFGQPF PNGPPWNPGSLQPQHTVRSLDRALEEAGSSGILSLSGRKLRDFPGSGYDLTDTTQADLSR NRFTEIPSDVWLFAPLETLNLYHNCIKTIPEAIKNLQMLTYLNISRNLLSTLPKYLFDLP LKVLVVSNNKLVSIPEEIGKLKDLMELDISCNEIQVLPQQMGKLHSLRELNIRRNNLHVL PDELGDLPLVKLDFSCNKVTEIPVCYRKLHHLQVIILDNNPLQVPPAQICLKGKVHIFKY LNIQACCRMDKKPDSLDLPSLSKRMPSQPLTDSMEDFYPNKNHGPDSGIGSDNGEKRLST TEPSDDDTVSLHSQVSESNREQTSRNDSHIIGSKTDSQKDQEVYDFVDPNTEDVAVPEQG NAHIGSFVSFFKGKEKCSEKSRKNEELGDEKRLEKEQLLAEEEDDDLKEVTDLRKIAAQL LQQEQKNRILNHSTSVMRNKPKQTVECEKSVSADEVNSPLSPLTWQPLENQKDQIDEQPW PESHPIIWQSEERRRSKQIRKEYFKYKSMRKSSSGNENDEQDSDNANMSTQSPVSSEEYD RTDGFSHSPFGLKPRSAFSRSSRQEYGAADPGFTMRRKMEHLREEREQIRQLRNNLESRL KVILPDDIGAALMDGVVLCHLANHIRPRSVASIHVPSPAVPKLSMAKCRRNVENFLDACK KLGVSQERLCLPHHILEERGLVKVGVTVQALLELPTTKASQLSVA
Nucleotide Sequence (with vector) for pF1KE1071 Download>pF1KE1071 5408 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGCGGCGAGT CAGGGAGGAGGCGGTAACAGTGGGGGCGGCGGTTGTGGTGGAGGTGGAAGTAGCGGTGGC TGTGGCACGGCTGGAGGGGGAGGTGGCGGGGCTGGAGGGGGAGGCGGCGGCGGCGGCGGG ACCCTGGTGGTCCCCATCCCGGTACCGACTCTTTTCGGTCAGCCGTTCCCCAACGGGCCG CCGTGGAACCCGGGGAGCCTGCAGCCTCAGCACACCGTGAGGAGCCTGGACCGGGCCCTG GAAGAGGCGGGCAGCTCCGGCATCCTGAGCCTCAGTGGTCGGAAACTCCGAGACTTCCCG GGCAGCGGCTACGACCTGACGGACACCACCCAAGCAGATCTTTCCAGAAATCGTTTTACA GAAATTCCTTCTGATGTCTGGTTATTTGCACCCCTTGAAACATTAAATTTATATCATAAT TGCATCAAAACCATTCCTGAAGCCATTAAAAATCTGCAGATGTTAACATACCTTAACATT AGCCGAAATCTTTTATCAACATTGCCAAAATACCTATTTGATCTTCCCCTTAAAGTTTTG GTCGTCAGTAATAATAAACTGGTATCCATTCCAGAAGAAATTGGGAAGTTAAAAGATTTA ATGGAATTGGATATTAGCTGCAATGAGATTCAAGTCCTTCCCCAACAAATGGGAAAATTA CATTCACTTAGAGAGCTAAATATAAGAAGAAATAATCTTCATGTTTTGCCAGATGAATTA GGAGACCTTCCCTTAGTCAAGCTGGATTTCTCTTGTAATAAAGTGACCGAAATTCCAGTT TGTTACAGAAAGCTGCATCATTTACAAGTAATAATTTTGGATAACAATCCATTGCAAGTA CCACCAGCACAGATATGTTTAAAGGGTAAGGTGCACATATTTAAGTACTTAAATATTCAA GCATGTTGCAGAATGGATAAGAAACCAGATTCCCTGGATCTTCCATCATTGAGTAAACGA ATGCCCTCACAGCCTCTCACAGACAGTATGGAAGATTTTTATCCAAATAAAAATCATGGC CCTGACTCTGGAATTGGAAGTGATAATGGAGAGAAACGATTATCCACAACAGAACCATCA GATGATGACACAGTCAGCCTTCATTCTCAAGTCTCAGAATCAAATAGAGAGCAGACATCA AGAAATGACAGTCACATAATAGGAAGTAAGACTGATTCTCAGAAAGACCAGGAGGTATAT GATTTTGTTGACCCCAACACAGAAGATGTAGCAGTTCCTGAACAGGGAAATGCACATATT GGATCATTTGTATCATTCTTTAAGGGAAAAGAAAAATGTTCTGAAAAATCTCGGAAAAAT GAAGAATTAGGAGATGAAAAAAGACTTGAGAAAGAACAGTTACTGGCAGAGGAAGAGGAT GATGATTTGAAGGAAGTAACTGATTTGAGGAAAATAGCTGCTCAGTTATTGCAGCAAGAA CAGAAGAACAGGATTCTTAATCATTCAACTTCTGTGATGAGAAACAAGCCAAAACAAACT GTGGAATGTGAAAAGAGTGTCTCAGCAGATGAAGTTAATTCACCATTATCACCCCTCACC TGGCAGCCCTTAGAAAATCAGAAGGATCAAATAGATGAACAACCGTGGCCAGAATCTCAC CCTATAATCTGGCAGAGTGAAGAAAGGAGGCGGAGCAAACAGATTAGAAAAGAATATTTC AAGTATAAATCAATGAGGAAGAGTTCAAGTGGCAATGAAAATGATGAGCAAGACAGTGAT AATGCTAATATGTCAACACAATCTCCAGTATCATCTGAGGAATATGACAGAACTGATGGT TTTTCACACAGTCCCTTTGGCTTGAAGCCTAGATCAGCTTTTAGCCGCTCATCTCGCCAA GAATATGGGGCAGCAGATCCAGGATTTACAATGAGAAGAAAGATGGAACATTTACGGGAA GAGCGAGAGCAAATACGACAACTTCGCAACAATCTTGAATCCAGGTTAAAAGTAATTTTG CCTGATGACATTGGAGCTGCACTGATGGATGGGGTTGTTCTTTGCCATTTAGCCAATCAT ATAAGGCCACGTTCTGTTGCTAGTATTCATGTACCATCACCAGCAGTGCCCAAACTGAGC ATGGCAAAATGTCGAAGAAATGTAGAAAATTTTCTTGATGCTTGTAAAAAGTTGGGTGTC TCACAGGAAAGACTTTGTTTGCCTCATCATATTTTGGAAGAACGAGGACTTGTGAAAGTT GGTGTCACAGTTCAGGCGCTCCTTGAATTACCAACAACCAAGGCATCTCAGCTTTCTGTG GCTGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCAT GCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGC TGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCT GAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCG CCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCA GATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTA CGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCA AAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGG ATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACA GGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCT TGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCC GCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCC GGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGC GTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTG GGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCC ATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGAC CACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGAT CAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTC AAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCG AATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTG GCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGC GAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATC GCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCG ACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGA ATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCG TAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAA AAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTT TCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCT GTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCT CAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCC CGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTT ATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGC TACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTAT CTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAA ACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAA AAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGA AAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCT TTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACC ATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTG CATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTT TGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTA CAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACC GCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACA GATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGC GGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTC AGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTA GGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGG CAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATG GCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTAT CCGCTCAT
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