FXC11295

Gene/Protein Characteristic Table for FXC11295

Species

human

Clone Name

pF1KE0830 Sequence (with vector) Restriction Map

Product ID

FXC11295

Corresponding
HaloTag Clone PID

FHC11295

ORF Sequence

DNA sequence (759 bp)
Protein sequence (253 aa)

Linker Type

Flexi type

The extra Val codon is attached to the 3'-end of the ORF, because a Pme I site ...

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB529257]

Gene

KIEE0830

Symbol

OR4P1P

Alias : OR4P2P

Description

Putative olfactory receptor, family 4, subfamily P, member 1

Original Clone ID

cp01230

Features of the cloned ORF sequence

Description

Length: 759 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 253 aa
Result of homology search against nr database ( FASTA output, Multiple alignment) Entry Exp ID% Protein Source BAC05766 4.2e-106 100.0 seven transmemb... Homo sapiens XP_001135203 2.2e-102 96.8 similar to seve... Pan troglodytes XP_853401 3.2e-81 77.6 similar to Olfa... Canis lupus fam... Q8NGL7 8.1e-80 75.0 Olfactory recep... Homo sapiens XP_001155635 1.7e-76 74.5 similar to seve... Pan troglodytes The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR000725 34 45 PR00245 Olfactory receptor IPR000725 71 83 PR00245 Olfactory receptor IPR000725 118 134 PR00245 Olfactory receptor IPR000725 177 186 PR00245 Olfactory receptor IPR000725 222 233 PR00245 Olfactory receptor HMMPfam IPR000276 1 229 PF00001 Rhodopsin-like GPCR superfamily ProfileScan IPR000276 1 232 PS50262 Rhodopsin-like GPCR superfamily
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 3 FFLNYLALSDLCYISTVAPKLMI 25 PRIMARY 23 2 96 IHSASQFLLTIFLPFCGLNEIDQ 118 SECONDARY 23 3 120 FCYVYPLLKLARIDIYRIGFLVI 142 SECONDARY 23 4 149 SLLAFVILMVSYYLILSTIRVYS 171 PRIMARY 23 5 182 CSSHIIVVVLFFVPALFIYIRPA 204 PRIMARY 23 6 211 KVFVLFCAIIAPMFSLLIYML 231 PRIMARY 21
Result of homology search against disease genes in OMIM database

(FASTA output, Multiple alignment)

H_id	H_len (aa)	OMIM_No.	ID (%)	Q_ali/Q_len (%)
NP_006628	314	608496	71.5	96.0
NP_036501	317	608497	68.1	96.4
NP_001005487	307	611677	66.9	96.4
NP_009091	312	600578	66.2	99.6
NP_835462	317	608493	67.8	99.6