PABPN1L ORF clone FXC11173

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Flexi ORF Clone FXC11173

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Clone info.

Species

human

Clone Name

pF1KE0573 Sequence (with vector) Restriction Map

Product ID

FXC11173

HaloTag Clone PID

FHC11173

ORF Sequence

DNA sequence (867 bp)
Protein sequence (289 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB528852]

Gene

KIEE0573

Symbol

PABPN1L

Alias : PABPNL1, ePABP2

Description

poly(A) binding protein, nuclear 1-like (cytoplasmic)

Original Clone ID

oc01273

Features of the cloned ORF sequence

Description

Length: 867 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 289 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS45547.2 4.6e-76 96.8 PABPN1L CCDS73925.1 1.2e-52 76.8 PABPN1L CCDS9592.1 8.4e-20 46.2 PABPN1 CCDS55906.1 2e-19 51.3 PABPN1 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR000504 149 218 PF00076 RNA recognition motif domain HMMSmart IPR000504 148 220 SM00360 RNA recognition motif domain ProfileScan IPR000504 147 224 PS50102 RNA recognition motif domain
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_004634 306 164300,602279 46.2 80.6 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KE0573 Download

>KIEE0573  867 bp
ATGTGGCCCTTCCCGAGCCGCTCTCTCTTCCCACCCCCGACTCAGGCCTGGCTCCAGACG
GTCTCCTCAGACCCTGAGGCCCAGGGCTGGGGGGCCTGGAACGAGACCAAGGAGATTCTG
GGGCCAGAGGGTGGGGAAGGGAAGGAGGAGAAAGAGGAGGAAGAGGATGCAGAGGAAGAC
CAGGATGGGGATGCAGGCTTTCTGCTGTCTCTGCTGGAGCAAGAGAACCTGGCTGAGTGC
CCATTGCCTGACCAGGAGCTGGAGGCCATCAAGATGAAGGTGTGTGCCATGGAGCAGGCC
GAGGGGACGCCACGGCCTCCAGGAGTGCAGCAACAGGCCGAGGAAGAGGAGGGCACCGCG
GCCGGGCAGCTGCTGAGCCCTGAGACCGTGGGCTGCCCCCTCTCTGGGACCCCCGAGGAG
AAGGTGGAGGCTGACCACAGATCCGTCTACGTGGGCAACGTGGACTACGGGGGCTCCGCC
GAGGAGCTGGAGGCCCACTTCAGCCGCTGTGGGGAGGTCCACCGAGTCACGATCCTGTGT
GACAAGTTCTCTGGACACCCCAAGGGTTATGCCTACATAGAGTTTGCCACCAAGGGCTCC
GTGCAGGCCGCCGTGGAGCTGGACCAGAGCCTCTTCCGGGGCCGGGTCATCAAGGTGCTG
CCGAAAAGAACCAACTTCCCTGGGATCAGCTCCACAGACCGCGGGGGCCTTCGAGGACAC
CCAGGCTCCAGGGGGGCACCCTTCCCCCACAGCGGCCTCCAGGGCAGGCCCCGGCTCAGA
CCACAAGGGCAGAACCGGACGCCGGCGGCACTGACGCCACTATGGGCTCGGCCGCTGCCC
TGGGTGGTAGTCAGCCACGTCATCAAG

ORF Protein

Cloned ORF protein sequence for pF1KE0573 Download

>KIEE0573  289 aa
MWPFPSRSLFPPPTQAWLQTVSSDPEAQGWGAWNETKEILGPEGGEGKEEKEEEEDAEED
QDGDAGFLLSLLEQENLAECPLPDQELEAIKMKVCAMEQAEGTPRPPGVQQQAEEEEGTA
AGQLLSPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILC
DKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGH
PGSRGAPFPHSGLQGRPRLRPQGQNRTPAALTPLWARPLPWVVVSHVIK

ORF+Vector

Nucleotide Sequence (with vector) for pF1KE0573 Download

>pF1KE0573  3980 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGTGGCCCTTC
CCGAGCCGCTCTCTCTTCCCACCCCCGACTCAGGCCTGGCTCCAGACGGTCTCCTCAGAC
CCTGAGGCCCAGGGCTGGGGGGCCTGGAACGAGACCAAGGAGATTCTGGGGCCAGAGGGT
GGGGAAGGGAAGGAGGAGAAAGAGGAGGAAGAGGATGCAGAGGAAGACCAGGATGGGGAT
GCAGGCTTTCTGCTGTCTCTGCTGGAGCAAGAGAACCTGGCTGAGTGCCCATTGCCTGAC
CAGGAGCTGGAGGCCATCAAGATGAAGGTGTGTGCCATGGAGCAGGCCGAGGGGACGCCA
CGGCCTCCAGGAGTGCAGCAACAGGCCGAGGAAGAGGAGGGCACCGCGGCCGGGCAGCTG
CTGAGCCCTGAGACCGTGGGCTGCCCCCTCTCTGGGACCCCCGAGGAGAAGGTGGAGGCT
GACCACAGATCCGTCTACGTGGGCAACGTGGACTACGGGGGCTCCGCCGAGGAGCTGGAG
GCCCACTTCAGCCGCTGTGGGGAGGTCCACCGAGTCACGATCCTGTGTGACAAGTTCTCT
GGACACCCCAAGGGTTATGCCTACATAGAGTTTGCCACCAAGGGCTCCGTGCAGGCCGCC
GTGGAGCTGGACCAGAGCCTCTTCCGGGGCCGGGTCATCAAGGTGCTGCCGAAAAGAACC
AACTTCCCTGGGATCAGCTCCACAGACCGCGGGGGCCTTCGAGGACACCCAGGCTCCAGG
GGGGCACCCTTCCCCCACAGCGGCCTCCAGGGCAGGCCCCGGCTCAGACCACAAGGGCAG
AACCGGACGCCGGCGGCACTGACGCCACTATGGGCTCGGCCGCTGCCCTGGGTGGTAGTC
AGCCACGTCATCAAGGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCG
ACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGC
TGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAG
GGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCA
GTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTT
TTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGG
ACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCA
GCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGC
AAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCT
GATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGT
TCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGC
TGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAG
ACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTG
GCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGAC
TGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCC
GAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACC
TGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCC
GGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTG
TTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGAT
GCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGC
CGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAA
GAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGAT
TCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGT
TCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACG
GTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAA
GGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGA
CGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAG
ATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCT
TACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACG
CTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACC
CCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGT
AAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTA
TGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGAC
AGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTC
TTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGAT
TACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGC
TCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTT
CACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGG
GATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGT
ACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTT
TTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTT
TAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCA
TCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTT
CAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGG
CGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAG
CGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAA
AACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACG
CTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCG
GAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCA
TCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACAT
TCAAATATGTATCCGCTCAT