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SpecieshumanProduct IDFXC10760Cloning SiteSgfI-PmeIGeneKIEE0091SymbolSLC6A11
Alias : GAT-3, GAT3, GAT4Descriptionsolute carrier family 6 (neurotransmitter transporter), member 11Original Clone IDoc00791
Length: 1896 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 632 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS2602.1 0 100.0 SLC6A11 CCDS8502.1 3.1e-187 70.8 SLC6A13 CCDS8501.1 1e-178 67.8 SLC6A12 CCDS33705.1 7.5e-165 64.1 SLC6A6 CCDS77704.1 8.5e-165 64.1 SLC6A6
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR002982 42 50 PR01197 Sodium:neurotransmitter symporter IPR000175 58 79 PR00176 Sodium:neurotransmitter symporter IPR000175 87 106 PR00176 Sodium:neurotransmitter symporter IPR000175 131 157 PR00176 Sodium:neurotransmitter symporter IPR002982 189 198 PR01197 Sodium:neurotransmitter symporter IPR000175 253 270 PR00176 Sodium:neurotransmitter symporter IPR000175 335 355 PR00176 Sodium:neurotransmitter symporter IPR000175 389 408 PR00176 Sodium:neurotransmitter symporter IPR000175 473 493 PR00176 Sodium:neurotransmitter symporter IPR000175 513 533 PR00176 Sodium:neurotransmitter symporter IPR002982 593 605 PR01197 Sodium:neurotransmitter symporter HMMPfam IPR000175 50 575 PF00209 Sodium:neurotransmitter symporter ProfileScan IPR000175 49 578 PS50267 Sodium:neurotransmitter symporter
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 55 NKVEFVLSVAGEIIGLGNVWRFP 77 SECONDARY 23 2 86 GAFLIPYVVFFICCGIPVFFLET 108 PRIMARY 23 3 142 HLNVYYIIILAWAIFYLSNCFTT 164 PRIMARY 23 4 218 IEHIGNLRWELALCLLAAWTICY 240 SECONDARY 23 5 251 GKVVYVTATFPYIMLLILLIRGV 273 PRIMARY 23 6 302 AGTQIFFSYAICLGCLTALGSY 323 PRIMARY 22 7 335 IMLCCLNSGTSFVAGFAIFSVLG 357 SECONDARY 23 8 397 TLFFMMLIFLGLDSQFVCVESLV 419 PRIMARY 23 9 439 LILALSVISYFLGLVMLTEGGMY 461 PRIMARY 23 10 471 ASGMCLLFVAIFECICIGWVYGS 493 PRIMARY 23 11 513 KWCWMIMTPGICAGIFIFFLIK 534 PRIMARY 22 12 552 GIGWLMALSSMLCIPLWICITVW 574 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_055044 632 607952 100.0 100.0 NP_057699 602 615097 70.8 91.3 NP_001193860 614 603080 67.8 92.7 NP_001116320 614 603080 67.8 92.7 XP_011519312 614 603080 67.8 92.7 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KE0091 Download>KIEE0091 1896 bp ATGACGGCGGAGAAGGCGCTGCCCCTGGGCAATGGGAAGGCTGCTGAGGAGGCGCGGGAG TCCGAGGCGCCGGGTGGCGGCTGCAGCAGCGGGGGCGCGGCGCCCGCGCGCCACCCGCGC GTCAAGCGCGACAAGGCGGTCCACGAGCGCGGCCACTGGAACAACAAGGTGGAGTTCGTG CTGAGCGTGGCCGGGGAGATCATTGGGCTGGGCAACGTGTGGCGCTTCCCCTACCTGTGC TACAAGAACGGAGGAGGGGCATTCCTGATTCCCTACGTGGTGTTTTTTATTTGCTGTGGA ATTCCTGTTTTTTTCCTGGAGACAGCTCTGGGGCAGTTCACAAGTGAAGGTGGCATTACG TGTTGGAGGAAAGTTTGCCCTTTATTTGAAGGCATTGGCTATGCAACACAGGTGATTGAG GCCCATCTGAATGTGTACTACATCATCATCCTGGCATGGGCCATTTTTTACCTGAGCAAC TGCTTCACTACTGAGCTACCCTGGGCTACCTGTGGGCATGAGTGGAACACAGAGAATTGT GTGGAGTTCCAGAAACTGAATGTGAGCAACTACAGCCATGTGTCTCTGCAGAATGCCACC TCCCCTGTCATGGAGTTTTGGGAGCACCGGGTCCTGGCCATCTCTGACGGGATCGAGCAC ATCGGGAACCTTCGCTGGGAGCTGGCCTTGTGTCTCTTGGCAGCCTGGACCATCTGTTAC TTCTGTATCTGGAAGGGGACCAAGTCTACAGGAAAGGTTGTATACGTGACTGCGACATTC CCCTACATCATGCTGCTGATCCTCCTGATACGAGGGGTCACGTTGCCCGGGGCCTCAGAG GGCATCAAGTTCTACTTGTACCCTGACCTCTCCCGGCTCTCCGACCCCCAGGTCTGGGTA GATGCTGGAACGCAGATCTTTTTCTCCTATGCCATTTGCCTGGGCTGTCTGACCGCTCTG GGAAGTTATAACAATTATAACAACAACTGCTACAGGGACTGCATCATGCTCTGTTGCCTG AACAGCGGCACCAGCTTCGTGGCTGGGTTTGCCATCTTCTCAGTCCTGGGTTTTATGGCG TACGAGCAGGGGGTACCCATTGCTGAGGTGGCAGAGTCAGGCCCCGGCCTGGCCTTTATT GCGTACCCCAAGGCGGTCACCATGATGCCTCTCTCCCCGCTGTGGGCCACCTTGTTCTTC ATGATGCTCATCTTCCTGGGCCTGGACAGCCAGTTTGTGTGTGTGGAAAGCCTGGTGACC GCCGTGGTGGACATGTACCCCAAGGTTTTCCGGAGGGGTTACCGGCGGGAGCTGCTCATC CTAGCCTTGTCTGTTATCTCCTATTTTCTGGGCCTCGTGATGTTAACAGAGGGTGGCATG TACATCTTCCAGCTCTTTGACTCCTATGCCGCCAGTGGGATGTGCCTTCTCTTCGTGGCC ATCTTTGAGTGCATCTGCATCGGCTGGGTGTATGGAAGCAACCGGTTCTATGATAACATT GAAGACATGATTGGCTACCGGCCACCGTCGCTCATTAAGTGGTGCTGGATGATCATGACC CCTGGGATCTGCGCGGGGATCTTCATCTTCTTCTTGATCAAGTACAAGCCACTCAAGTAC AACAACATCTACACCTACCCAGCCTGGGGCTATGGCATTGGCTGGCTCATGGCCCTGTCC TCCATGCTCTGCATCCCGCTCTGGATCTGCATCACAGTGTGGAAGACGGAGGGGACACTG CCCGAGAAACTCCAGAAGTTGACGACCCCCAGCACAGATCTGAAAATGCGGGGCAAGCTT GGGGTGAGCCCACGGATGGTGACAGTTAATGACTGTGATGCCAAACTCAAGAGTGACGGG ACCATCGCAGCCATCACAGAGAAGGAGACGCACTTC
Cloned ORF protein sequence for pF1KE0091 Download>KIEE0091 632 aa MTAEKALPLGNGKAAEEARESEAPGGGCSSGGAAPARHPRVKRDKAVHERGHWNNKVEFV LSVAGEIIGLGNVWRFPYLCYKNGGGAFLIPYVVFFICCGIPVFFLETALGQFTSEGGIT CWRKVCPLFEGIGYATQVIEAHLNVYYIIILAWAIFYLSNCFTTELPWATCGHEWNTENC VEFQKLNVSNYSHVSLQNATSPVMEFWEHRVLAISDGIEHIGNLRWELALCLLAAWTICY FCIWKGTKSTGKVVYVTATFPYIMLLILLIRGVTLPGASEGIKFYLYPDLSRLSDPQVWV DAGTQIFFSYAICLGCLTALGSYNNYNNNCYRDCIMLCCLNSGTSFVAGFAIFSVLGFMA YEQGVPIAEVAESGPGLAFIAYPKAVTMMPLSPLWATLFFMMLIFLGLDSQFVCVESLVT AVVDMYPKVFRRGYRRELLILALSVISYFLGLVMLTEGGMYIFQLFDSYAASGMCLLFVA IFECICIGWVYGSNRFYDNIEDMIGYRPPSLIKWCWMIMTPGICAGIFIFFLIKYKPLKY NNIYTYPAWGYGIGWLMALSSMLCIPLWICITVWKTEGTLPEKLQKLTTPSTDLKMRGKL GVSPRMVTVNDCDAKLKSDGTIAAITEKETHF
Nucleotide Sequence (with vector) for pF1KE0091 Download>pF1KE0091 5009 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGACGGCGGAG AAGGCGCTGCCCCTGGGCAATGGGAAGGCTGCTGAGGAGGCGCGGGAGTCCGAGGCGCCG GGTGGCGGCTGCAGCAGCGGGGGCGCGGCGCCCGCGCGCCACCCGCGCGTCAAGCGCGAC AAGGCGGTCCACGAGCGCGGCCACTGGAACAACAAGGTGGAGTTCGTGCTGAGCGTGGCC GGGGAGATCATTGGGCTGGGCAACGTGTGGCGCTTCCCCTACCTGTGCTACAAGAACGGA GGAGGGGCATTCCTGATTCCCTACGTGGTGTTTTTTATTTGCTGTGGAATTCCTGTTTTT TTCCTGGAGACAGCTCTGGGGCAGTTCACAAGTGAAGGTGGCATTACGTGTTGGAGGAAA GTTTGCCCTTTATTTGAAGGCATTGGCTATGCAACACAGGTGATTGAGGCCCATCTGAAT GTGTACTACATCATCATCCTGGCATGGGCCATTTTTTACCTGAGCAACTGCTTCACTACT GAGCTACCCTGGGCTACCTGTGGGCATGAGTGGAACACAGAGAATTGTGTGGAGTTCCAG AAACTGAATGTGAGCAACTACAGCCATGTGTCTCTGCAGAATGCCACCTCCCCTGTCATG GAGTTTTGGGAGCACCGGGTCCTGGCCATCTCTGACGGGATCGAGCACATCGGGAACCTT CGCTGGGAGCTGGCCTTGTGTCTCTTGGCAGCCTGGACCATCTGTTACTTCTGTATCTGG AAGGGGACCAAGTCTACAGGAAAGGTTGTATACGTGACTGCGACATTCCCCTACATCATG CTGCTGATCCTCCTGATACGAGGGGTCACGTTGCCCGGGGCCTCAGAGGGCATCAAGTTC TACTTGTACCCTGACCTCTCCCGGCTCTCCGACCCCCAGGTCTGGGTAGATGCTGGAACG CAGATCTTTTTCTCCTATGCCATTTGCCTGGGCTGTCTGACCGCTCTGGGAAGTTATAAC AATTATAACAACAACTGCTACAGGGACTGCATCATGCTCTGTTGCCTGAACAGCGGCACC AGCTTCGTGGCTGGGTTTGCCATCTTCTCAGTCCTGGGTTTTATGGCGTACGAGCAGGGG GTACCCATTGCTGAGGTGGCAGAGTCAGGCCCCGGCCTGGCCTTTATTGCGTACCCCAAG GCGGTCACCATGATGCCTCTCTCCCCGCTGTGGGCCACCTTGTTCTTCATGATGCTCATC TTCCTGGGCCTGGACAGCCAGTTTGTGTGTGTGGAAAGCCTGGTGACCGCCGTGGTGGAC ATGTACCCCAAGGTTTTCCGGAGGGGTTACCGGCGGGAGCTGCTCATCCTAGCCTTGTCT GTTATCTCCTATTTTCTGGGCCTCGTGATGTTAACAGAGGGTGGCATGTACATCTTCCAG CTCTTTGACTCCTATGCCGCCAGTGGGATGTGCCTTCTCTTCGTGGCCATCTTTGAGTGC ATCTGCATCGGCTGGGTGTATGGAAGCAACCGGTTCTATGATAACATTGAAGACATGATT GGCTACCGGCCACCGTCGCTCATTAAGTGGTGCTGGATGATCATGACCCCTGGGATCTGC GCGGGGATCTTCATCTTCTTCTTGATCAAGTACAAGCCACTCAAGTACAACAACATCTAC ACCTACCCAGCCTGGGGCTATGGCATTGGCTGGCTCATGGCCCTGTCCTCCATGCTCTGC ATCCCGCTCTGGATCTGCATCACAGTGTGGAAGACGGAGGGGACACTGCCCGAGAAACTC CAGAAGTTGACGACCCCCAGCACAGATCTGAAAATGCGGGGCAAGCTTGGGGTGAGCCCA CGGATGGTGACAGTTAATGACTGTGATGCCAAACTCAAGAGTGACGGGACCATCGCAGCC ATCACAGAGAAGGAGACGCACTTCGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCT CTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGC TGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACG GGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAA AACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGC GCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCG TTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTG CTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGG AAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGA TCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTG CACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAG ACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTT TTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTA TCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCG GGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTT GCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGAT CCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGG ATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCA GCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACT CATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATC GACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGAT ATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCC GCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGA CTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGC GGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGG CCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCG CCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGG ACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGAC CCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCA TAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGT GCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTC CAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAG AGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACAC TAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGT TGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAA GCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGG GTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAA AAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCC CTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAAT GTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATT GCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTG AACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCC TCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCG AGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAA TTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAA ACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGC ATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGT CGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGC AACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGC AGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTC TAAATACATTCAAATATGTATCCGCTCAT
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