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SpecieshumanProduct IDFXC06892Cloning SiteSgfI-PmeIGeneKIEE0373SymbolSLCO4C1
Alias : OATP-H, OATP-M1, OATP4C1, OATPX, PRO2176, SLC21A20Descriptionsolute carrier organic anion transporter family, member 4C1Original Clone IDoc01073
Length: 2172 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 724 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS34205.1 0 100.0 SLCO4C1 CCDS34206.1 9.8e-88 40.8 SLCO6A1 CCDS13501.1 3.1e-86 41.3 SLCO4A1 CCDS75282.1 4.5e-68 37.2 SLCO6A1 CCDS3084.1 5e-43 32.8 SLCO2A1
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition HMMPfam IPR004156 107 664 PF03137 Organic anion transporter polypeptide OATP IPR011497 507 547 PF07648 Protease inhibitor HMMTigr IPR004156 84 690 TIGR00805 Organic anion transporter polypeptide OATP ProfileScan IPR020846 107 687 PS50850 Major facilitator superfamily domain NULL 495 549 PS51465 NULL
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 107 FLLHYCLLAVTQGIVVNGLVNIS 129 SECONDARY 23 2 149 SSYDISFCLLSLFVSFFGERGH 170 SECONDARY 22 3 175 LAFAAFMIGLGALVFSLPQFFSG 197 PRIMARY 23 4 224 SLSNYLYVFILGQLLLGAGGTPL 246 SECONDARY 23 5 273 MSILGPAIGYVLGGQLLTIYIDV 295 SECONDARY 23 6 313 AWWIGFLLSWIFAWSLIIPFSCF 335 PRIMARY 23 7 383 VFMCLVLSTSSEALITTGFATFL 405 SECONDARY 23 8 419 FAATLGGAVLIPGAALGQILGGF 441 SECONDARY 23 9 453 TMKFALFTSGVALTLSFVFMYAK 475 SECONDARY 23 10 579 IFLCIFFIVIIFTFMAGTPITVS 601 PRIMARY 23 11 619 FMVLRLLGTIPGPIIFGFTIDST 641 SECONDARY 23 12 666 HMLVAISVTCKVITMFFNGFAIF 688 SECONDARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_851322 724 609013 100.0 100.0 XP_011541674 586 609013 100.0 80.9 XP_011541672 636 609013 87.8 100.0 XP_005271931 719 613365 40.8 95.0 NP_775759 719 613365 40.8 95.0 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KE0373 Download>KIEE0373 2172 bp ATGAAGAGCGCCAAAGGTATTGAGAACTTGGCTTTTGTCCCCTCCAGCCCAGACATCCTG CGCCGCTTGTCTGCGTCGCCCTCCCAAATCGAAGTCTCTGCCTTGTCCTCTGACCCCCAA AGAGAGAATTCTCAGCCACAGGAGCTTCAGAAGCCCCAGGAGCCCCAGAAGTCACCAGAG CCATCTCTGCCTTCAGCCCCTCCCAATGTCTCCGAAGAGAAGCTCCGGTCACTGTCGCTG TCCGAGTTTGAGGAGGGGTCTTACGGCTGGAGGAACTTCCATCCTCAATGTCTCCAGCGC TGCAACACACCTGGAGGCTTTCTGCTTCACTACTGCCTCTTGGCCGTCACGCAAGGTATT GTAGTTAATGGCCTAGTAAATATTAGCATTTCCACTGTTGAGAAGCGTTATGAAATGAAG AGTTCCCTGACTGGCCTGATTTCATCAAGCTACGATATTTCATTCTGTTTGTTGTCTTTA TTTGTATCATTCTTTGGTGAAAGAGGACATAAGCCGAGATGGCTTGCATTTGCAGCCTTT ATGATTGGACTGGGAGCACTTGTATTCTCATTGCCACAATTTTTCAGTGGAGAATATAAA TTGGGGTCTCTTTTTGAAGACACTTGTGTAACAACAAGGAATAGCACCAGTTGTACATCT TCAACTTCTTCACTTTCTAACTACTTGTATGTCTTCATCTTGGGACAACTATTGCTGGGG GCAGGAGGAACTCCTCTTTATACTCTGGGAACAGCCTTTCTTGATGATTCTGTGCCCACA CACAAGTCTTCTCTCTATATAGGAACCGGTTATGCTATGTCAATCTTAGGCCCTGCTATT GGCTATGTATTGGGAGGACAACTGCTAACCATATACATTGATGTTGCTATGGGAGAAAGC ACTGATGTCACTGAGGATGATCCGCGATGGTTGGGAGCTTGGTGGATTGGGTTTCTTCTA TCATGGATCTTTGCTTGGTCTTTAATAATACCTTTTTCTTGCTTTCCAAAACATTTACCA GGTACAGCAGAAATTCAAGCTGGAAAAACTTCCCAGGCTCATCAGAGTAATAGTAATGCA GATGTGAAATTTGGAAAAAGTATTAAAGATTTTCCAGCTGCTCTAAAGAATTTGATGAAG AATGCTGTCTTTATGTGTTTAGTTCTATCAACTTCTTCAGAAGCCTTAATTACTACTGGA TTTGCTACATTTTTACCTAAATTTATAGAAAATCAATTCGGATTGACATCCAGCTTCGCA GCTACTCTTGGAGGGGCTGTTTTAATTCCTGGAGCTGCTCTCGGTCAAATTTTAGGTGGC TTCCTTGTTTCAAAATTCAGAATGACATGTAAAAACACAATGAAGTTTGCACTGTTCACA TCTGGAGTTGCACTTACGCTGAGTTTTGTATTTATGTATGCCAAATGTGAAAATGAGCCA TTTGCTGGTGTATCTGAATCATATAATGGGACTGGAGAATTGGGAAACTTGATAGCCCCT TGTAATGCCAATTGTAACTGTTCGCGATCATATTATTATCCTGTCTGTGGAGATGGAGTC CAATATTTTTCTCCCTGCTTTGCAGGCTGTTCAAACCCAGTTGCACACAGGAAGCCAAAG GTATATTACAACTGTTCCTGTATTGAAAGGAAAACAGAAATAACATCCACTGCAGAAACT TTTGGTTTTGAAGCTAAAGCTGGAAAATGTGAAACTCATTGTGCGAAACTGCCCATATTC CTTTGCATTTTCTTTATTGTAATTATTTTTACCTTTATGGCCGGTACTCCTATAACTGTG TCTATCCTAAGGTGTGTTAATCACAGACAACGGTCCCTAGCCTTGGGAATACAATTTATG GTCCTTCGATTATTAGGGACAATTCCTGGACCAATTATATTTGGTTTCACAATAGACAGC ACATGTATTCTTTGGGATATAAATGATTGTGGAATTAAAGGAGCTTGCTGGATTTATGAT AACATCAAGATGGCCCATATGCTAGTAGCCATAAGTGTTACTTGTAAAGTTATCACCATG TTCTTCAATGGATTTGCAATCTTTTTGTATAAACCACCTCCATCAGCCACAGATGTGTCA TTTCATAAAGAGAATGCAGTTGTGACTAATGTTTTAGCAGAACAGGATCTCAACAAAATA GTAAAAGAAGGG
Cloned ORF protein sequence for pF1KE0373 Download>KIEE0373 724 aa MKSAKGIENLAFVPSSPDILRRLSASPSQIEVSALSSDPQRENSQPQELQKPQEPQKSPE PSLPSAPPNVSEEKLRSLSLSEFEEGSYGWRNFHPQCLQRCNTPGGFLLHYCLLAVTQGI VVNGLVNISISTVEKRYEMKSSLTGLISSSYDISFCLLSLFVSFFGERGHKPRWLAFAAF MIGLGALVFSLPQFFSGEYKLGSLFEDTCVTTRNSTSCTSSTSSLSNYLYVFILGQLLLG AGGTPLYTLGTAFLDDSVPTHKSSLYIGTGYAMSILGPAIGYVLGGQLLTIYIDVAMGES TDVTEDDPRWLGAWWIGFLLSWIFAWSLIIPFSCFPKHLPGTAEIQAGKTSQAHQSNSNA DVKFGKSIKDFPAALKNLMKNAVFMCLVLSTSSEALITTGFATFLPKFIENQFGLTSSFA ATLGGAVLIPGAALGQILGGFLVSKFRMTCKNTMKFALFTSGVALTLSFVFMYAKCENEP FAGVSESYNGTGELGNLIAPCNANCNCSRSYYYPVCGDGVQYFSPCFAGCSNPVAHRKPK VYYNCSCIERKTEITSTAETFGFEAKAGKCETHCAKLPIFLCIFFIVIIFTFMAGTPITV SILRCVNHRQRSLALGIQFMVLRLLGTIPGPIIFGFTIDSTCILWDINDCGIKGACWIYD NIKMAHMLVAISVTCKVITMFFNGFAIFLYKPPPSATDVSFHKENAVVTNVLAEQDLNKI VKEG
Nucleotide Sequence (with vector) for pF1KE0373 Download>pF1KE0373 5285 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGAAGAGCGCC AAAGGTATTGAGAACTTGGCTTTTGTCCCCTCCAGCCCAGACATCCTGCGCCGCTTGTCT GCGTCGCCCTCCCAAATCGAAGTCTCTGCCTTGTCCTCTGACCCCCAAAGAGAGAATTCT CAGCCACAGGAGCTTCAGAAGCCCCAGGAGCCCCAGAAGTCACCAGAGCCATCTCTGCCT TCAGCCCCTCCCAATGTCTCCGAAGAGAAGCTCCGGTCACTGTCGCTGTCCGAGTTTGAG GAGGGGTCTTACGGCTGGAGGAACTTCCATCCTCAATGTCTCCAGCGCTGCAACACACCT GGAGGCTTTCTGCTTCACTACTGCCTCTTGGCCGTCACGCAAGGTATTGTAGTTAATGGC CTAGTAAATATTAGCATTTCCACTGTTGAGAAGCGTTATGAAATGAAGAGTTCCCTGACT GGCCTGATTTCATCAAGCTACGATATTTCATTCTGTTTGTTGTCTTTATTTGTATCATTC TTTGGTGAAAGAGGACATAAGCCGAGATGGCTTGCATTTGCAGCCTTTATGATTGGACTG GGAGCACTTGTATTCTCATTGCCACAATTTTTCAGTGGAGAATATAAATTGGGGTCTCTT TTTGAAGACACTTGTGTAACAACAAGGAATAGCACCAGTTGTACATCTTCAACTTCTTCA CTTTCTAACTACTTGTATGTCTTCATCTTGGGACAACTATTGCTGGGGGCAGGAGGAACT CCTCTTTATACTCTGGGAACAGCCTTTCTTGATGATTCTGTGCCCACACACAAGTCTTCT CTCTATATAGGAACCGGTTATGCTATGTCAATCTTAGGCCCTGCTATTGGCTATGTATTG GGAGGACAACTGCTAACCATATACATTGATGTTGCTATGGGAGAAAGCACTGATGTCACT GAGGATGATCCGCGATGGTTGGGAGCTTGGTGGATTGGGTTTCTTCTATCATGGATCTTT GCTTGGTCTTTAATAATACCTTTTTCTTGCTTTCCAAAACATTTACCAGGTACAGCAGAA ATTCAAGCTGGAAAAACTTCCCAGGCTCATCAGAGTAATAGTAATGCAGATGTGAAATTT GGAAAAAGTATTAAAGATTTTCCAGCTGCTCTAAAGAATTTGATGAAGAATGCTGTCTTT ATGTGTTTAGTTCTATCAACTTCTTCAGAAGCCTTAATTACTACTGGATTTGCTACATTT TTACCTAAATTTATAGAAAATCAATTCGGATTGACATCCAGCTTCGCAGCTACTCTTGGA GGGGCTGTTTTAATTCCTGGAGCTGCTCTCGGTCAAATTTTAGGTGGCTTCCTTGTTTCA AAATTCAGAATGACATGTAAAAACACAATGAAGTTTGCACTGTTCACATCTGGAGTTGCA CTTACGCTGAGTTTTGTATTTATGTATGCCAAATGTGAAAATGAGCCATTTGCTGGTGTA TCTGAATCATATAATGGGACTGGAGAATTGGGAAACTTGATAGCCCCTTGTAATGCCAAT TGTAACTGTTCGCGATCATATTATTATCCTGTCTGTGGAGATGGAGTCCAATATTTTTCT CCCTGCTTTGCAGGCTGTTCAAACCCAGTTGCACACAGGAAGCCAAAGGTATATTACAAC TGTTCCTGTATTGAAAGGAAAACAGAAATAACATCCACTGCAGAAACTTTTGGTTTTGAA GCTAAAGCTGGAAAATGTGAAACTCATTGTGCGAAACTGCCCATATTCCTTTGCATTTTC TTTATTGTAATTATTTTTACCTTTATGGCCGGTACTCCTATAACTGTGTCTATCCTAAGG TGTGTTAATCACAGACAACGGTCCCTAGCCTTGGGAATACAATTTATGGTCCTTCGATTA TTAGGGACAATTCCTGGACCAATTATATTTGGTTTCACAATAGACAGCACATGTATTCTT TGGGATATAAATGATTGTGGAATTAAAGGAGCTTGCTGGATTTATGATAACATCAAGATG GCCCATATGCTAGTAGCCATAAGTGTTACTTGTAAAGTTATCACCATGTTCTTCAATGGA TTTGCAATCTTTTTGTATAAACCACCTCCATCAGCCACAGATGTGTCATTTCATAAAGAG AATGCAGTTGTGACTAATGTTTTAGCAGAACAGGATCTCAACAAAATAGTAAAAGAAGGG GTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCA AGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGA GCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAA AGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCA TGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGAT AGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGT GTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAA GAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATG GCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGA TGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGG GTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCC GTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGT GCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTT CCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGC GAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATC ATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCAC CAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAG GATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAG GCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAAT ATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCG GACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAA TGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCC TTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACC AAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATC AGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAA AAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAA TCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCC CCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTC CGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAG TTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGA CCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATC GCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTAC AGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTG CGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACA AACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAA AGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAA CTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTT ATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATG AAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCAT AGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGT TGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAA TTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCA GTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGAT TAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGT GGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGT GGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGT CGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGA CAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAG GACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCC TTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCG CTCAT
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