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SpecieshumanProduct IDFXC06886Cloning SiteSgfI-PmeIGeneKIEE0366SymbolSLC6A19
Alias : B0AT1, HNDDescriptionsolute carrier family 6 (neutral amino acid transporter), member 19Original Clone IDoc01066
Length: 1902 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 634 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS34130.1 0 100.0 SLC6A19 CCDS3860.1 2.9e-150 55.2 SLC6A18 CCDS43077.1 5.1e-128 46.3 SLC6A20 CCDS30799.1 8.3e-95 42.4 SLC6A17 CCDS9026.1 2.1e-93 43.8 SLC6A15
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR000175 40 61 PR00176 Sodium:neurotransmitter symporter IPR000175 69 88 PR00176 Sodium:neurotransmitter symporter IPR000175 113 139 PR00176 Sodium:neurotransmitter symporter IPR002438 165 177 PR01206 Sodium:neurotransmitter symporter IPR002438 178 189 PR01206 Sodium:neurotransmitter symporter IPR000175 222 239 PR00176 Sodium:neurotransmitter symporter IPR000175 304 324 PR00176 Sodium:neurotransmitter symporter IPR002438 327 337 PR01206 Sodium:neurotransmitter symporter IPR000175 410 429 PR00176 Sodium:neurotransmitter symporter IPR000175 491 511 PR00176 Sodium:neurotransmitter symporter IPR000175 531 551 PR00176 Sodium:neurotransmitter symporter HMMPfam IPR000175 32 607 PF00209 Sodium:neurotransmitter symporter ProfileScan IPR000175 31 610 PS50267 Sodium:neurotransmitter symporter
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 38 KAQYMLTCLGFCVGLGNVWRFPY 60 SECONDARY 23 2 69 AFMIPFLILLVLEGIPLLYLEFA 91 PRIMARY 23 3 117 ASMLTSFMVGLYYNTIISWIMWY 139 PRIMARY 23 4 194 QWWMLLCLACAWSVLYMCTIRGI 216 PRIMARY 23 5 224 YITSTLPYVVLTIFLIRGLTLKG 246 PRIMARY 23 6 272 GAQVFFSFSLAFGGLISFSSYNS 294 SECONDARY 23 7 304 VIVSIINGFTSVYVAIVVYSVIG 326 SECONDARY 23 8 421 FIMLFCLGLSSMFGNMEGVVVPL 443 PRIMARY 23 9 455 KEVLTGLICLGTFLIGFIFTLNS 477 PRIMARY 23 10 490 GSIPLLIIAFCEMFSVVYVYGVD 512 PRIMARY 23 11 535 RVVSPLLMLIIFLFFFVVEVSQE 557 PRIMARY 23 12 578 YPNWVYVVVVIVAGVPSLTIPGY 600 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_001003841 634 138500,234500,242600,608893 100.0 100.0 NP_872438 628 610300 55.2 90.7 NP_064593 592 138500,242600,605616 46.3 92.3 XP_006710706 727 610299,616269 42.4 94.6 NP_001010898 727 610299,616269 42.4 94.6 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KE0366 Download>KIEE0366 1902 bp ATGGTGAGGCTCGTGCTGCCCAACCCCGGCCTAGACGCCCGGATCCCGTCCCTGGCTGAG CTGGAGACCATCGAGCAGGAGGAGGCCAGCTCCCGGCCGAAGTGGGACAACAAGGCGCAG TACATGCTCACCTGCCTGGGCTTCTGCGTGGGCCTCGGCAACGTGTGGCGCTTCCCCTAC CTGTGTCAGAGCCACGGAGGAGGAGCCTTCATGATCCCGTTCCTCATCCTGCTGGTCCTG GAGGGCATCCCCCTGCTGTACCTGGAGTTCGCCATCGGGCAGCGGCTGCGGCGGGGCAGC CTGGGTGTGTGGAGCTCCATCCACCCGGCCCTGAAGGGCCTAGGCCTGGCCTCCATGCTC ACGTCCTTCATGGTGGGACTGTATTACAACACCATCATCTCCTGGATCATGTGGTACTTA TTCAACTCCTTCCAGGAGCCTCTGCCCTGGAGCGACTGCCCGCTCAACGAGAACCAGACA GGGTATGTGGACGAGTGCGCCAGGAGCTCCCCTGTGGACTACTTCTGGTACCGAGAGACG CTCAACATCTCCACGTCCATCAGCGACTCGGGCTCCATCCAGTGGTGGATGCTGCTGTGC CTGGCCTGCGCATGGAGCGTCCTGTACATGTGCACCATCCGCGGCATCGAGACCACCGGG AAGGCCGTGTACATCACCTCCACGCTGCCCTATGTCGTCCTGACCATCTTCCTCATCCGA GGCCTGACGCTGAAGGGCGCCACCAATGGCATCGTCTTCCTCTTCACGCCCAACGTCACG GAGCTGGCCCAGCCGGACACCTGGCTGGACGCGGGCGCACAGGTCTTCTTCTCCTTCTCC CTGGCCTTCGGGGGCCTCATCTCCTTCTCCAGCTACAACTCTGTGCACAACAACTGCGAG AAGGACTCGGTGATTGTGTCCATCATCAACGGCTTCACATCGGTGTATGTGGCCATCGTG GTCTACTCCGTCATTGGGTTCCGCGCCACGCAGCGCTACGACGACTGCTTCAGCACGAAC ATCCTGACCCTCATCAACGGGTTCGACCTGCCTGAAGGCAACGTGACCCAGGAGAACTTT GTGGACATGCAGCAGCGGTGCAACGCCTCCGACCCCGCGGCCTACGCGCAGCTGGTGTTC CAGACCTGCGACATCAACGCCTTCCTCTCAGAGGCCGTGGAGGGCACAGGCCTGGCCTTC ATCGTCTTCACCGAGGCCATCACCAAGATGCCGTTGTCCCCACTGTGGTCTGTGCTCTTC TTCATTATGCTCTTCTGCCTGGGGCTGTCATCTATGTTTGGGAACATGGAGGGCGTCGTT GTGCCCCTGCAGGACCTCAGAGTCATCCCCCCGAAGTGGCCCAAGGAGGTGCTCACAGGC CTCATCTGCCTGGGGACATTCCTCATTGGCTTCATCTTCACGCTGAACTCCGGCCAGTAC TGGCTCTCCCTGCTGGACAGCTATGCCGGCTCCATTCCCCTGCTCATCATCGCCTTCTGC GAGATGTTCTCTGTGGTCTACGTGTACGGTGTGGACAGGTTCAATAAGGACATCGAGTTC ATGATCGGCCACAAGCCCAACATCTTCTGGCAAGTCACGTGGCGCGTGGTCAGCCCCCTG CTCATGCTGATCATCTTCCTCTTCTTCTTCGTGGTAGAGGTCAGTCAGGAGCTGACCTAC AGCATCTGGGACCCTGGCTACGAGGAATTTCCCAAATCCCAGAAGATCTCCTACCCGAAC TGGGTGTATGTGGTGGTGGTGATTGTGGCTGGAGTGCCCTCCCTCACCATCCCTGGCTAT GCCATCTACAAGCTCATCAGGAACCACTGCCAGAAGCCAGGGGACCATCAGGGGCTGGTG AGCACACTGTCCACAGCCTCCATGAACGGGGACCTGAAGTAC
Cloned ORF protein sequence for pF1KE0366 Download>KIEE0366 634 aa MVRLVLPNPGLDARIPSLAELETIEQEEASSRPKWDNKAQYMLTCLGFCVGLGNVWRFPY LCQSHGGGAFMIPFLILLVLEGIPLLYLEFAIGQRLRRGSLGVWSSIHPALKGLGLASML TSFMVGLYYNTIISWIMWYLFNSFQEPLPWSDCPLNENQTGYVDECARSSPVDYFWYRET LNISTSISDSGSIQWWMLLCLACAWSVLYMCTIRGIETTGKAVYITSTLPYVVLTIFLIR GLTLKGATNGIVFLFTPNVTELAQPDTWLDAGAQVFFSFSLAFGGLISFSSYNSVHNNCE KDSVIVSIINGFTSVYVAIVVYSVIGFRATQRYDDCFSTNILTLINGFDLPEGNVTQENF VDMQQRCNASDPAAYAQLVFQTCDINAFLSEAVEGTGLAFIVFTEAITKMPLSPLWSVLF FIMLFCLGLSSMFGNMEGVVVPLQDLRVIPPKWPKEVLTGLICLGTFLIGFIFTLNSGQY WLSLLDSYAGSIPLLIIAFCEMFSVVYVYGVDRFNKDIEFMIGHKPNIFWQVTWRVVSPL LMLIIFLFFFVVEVSQELTYSIWDPGYEEFPKSQKISYPNWVYVVVVIVAGVPSLTIPGY AIYKLIRNHCQKPGDHQGLVSTLSTASMNGDLKY
Nucleotide Sequence (with vector) for pF1KE0366 Download>pF1KE0366 5015 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGTGAGGCTC GTGCTGCCCAACCCCGGCCTAGACGCCCGGATCCCGTCCCTGGCTGAGCTGGAGACCATC GAGCAGGAGGAGGCCAGCTCCCGGCCGAAGTGGGACAACAAGGCGCAGTACATGCTCACC TGCCTGGGCTTCTGCGTGGGCCTCGGCAACGTGTGGCGCTTCCCCTACCTGTGTCAGAGC CACGGAGGAGGAGCCTTCATGATCCCGTTCCTCATCCTGCTGGTCCTGGAGGGCATCCCC CTGCTGTACCTGGAGTTCGCCATCGGGCAGCGGCTGCGGCGGGGCAGCCTGGGTGTGTGG AGCTCCATCCACCCGGCCCTGAAGGGCCTAGGCCTGGCCTCCATGCTCACGTCCTTCATG GTGGGACTGTATTACAACACCATCATCTCCTGGATCATGTGGTACTTATTCAACTCCTTC CAGGAGCCTCTGCCCTGGAGCGACTGCCCGCTCAACGAGAACCAGACAGGGTATGTGGAC GAGTGCGCCAGGAGCTCCCCTGTGGACTACTTCTGGTACCGAGAGACGCTCAACATCTCC ACGTCCATCAGCGACTCGGGCTCCATCCAGTGGTGGATGCTGCTGTGCCTGGCCTGCGCA TGGAGCGTCCTGTACATGTGCACCATCCGCGGCATCGAGACCACCGGGAAGGCCGTGTAC ATCACCTCCACGCTGCCCTATGTCGTCCTGACCATCTTCCTCATCCGAGGCCTGACGCTG AAGGGCGCCACCAATGGCATCGTCTTCCTCTTCACGCCCAACGTCACGGAGCTGGCCCAG CCGGACACCTGGCTGGACGCGGGCGCACAGGTCTTCTTCTCCTTCTCCCTGGCCTTCGGG GGCCTCATCTCCTTCTCCAGCTACAACTCTGTGCACAACAACTGCGAGAAGGACTCGGTG ATTGTGTCCATCATCAACGGCTTCACATCGGTGTATGTGGCCATCGTGGTCTACTCCGTC ATTGGGTTCCGCGCCACGCAGCGCTACGACGACTGCTTCAGCACGAACATCCTGACCCTC ATCAACGGGTTCGACCTGCCTGAAGGCAACGTGACCCAGGAGAACTTTGTGGACATGCAG CAGCGGTGCAACGCCTCCGACCCCGCGGCCTACGCGCAGCTGGTGTTCCAGACCTGCGAC ATCAACGCCTTCCTCTCAGAGGCCGTGGAGGGCACAGGCCTGGCCTTCATCGTCTTCACC GAGGCCATCACCAAGATGCCGTTGTCCCCACTGTGGTCTGTGCTCTTCTTCATTATGCTC TTCTGCCTGGGGCTGTCATCTATGTTTGGGAACATGGAGGGCGTCGTTGTGCCCCTGCAG GACCTCAGAGTCATCCCCCCGAAGTGGCCCAAGGAGGTGCTCACAGGCCTCATCTGCCTG GGGACATTCCTCATTGGCTTCATCTTCACGCTGAACTCCGGCCAGTACTGGCTCTCCCTG CTGGACAGCTATGCCGGCTCCATTCCCCTGCTCATCATCGCCTTCTGCGAGATGTTCTCT GTGGTCTACGTGTACGGTGTGGACAGGTTCAATAAGGACATCGAGTTCATGATCGGCCAC AAGCCCAACATCTTCTGGCAAGTCACGTGGCGCGTGGTCAGCCCCCTGCTCATGCTGATC ATCTTCCTCTTCTTCTTCGTGGTAGAGGTCAGTCAGGAGCTGACCTACAGCATCTGGGAC CCTGGCTACGAGGAATTTCCCAAATCCCAGAAGATCTCCTACCCGAACTGGGTGTATGTG GTGGTGGTGATTGTGGCTGGAGTGCCCTCCCTCACCATCCCTGGCTATGCCATCTACAAG CTCATCAGGAACCACTGCCAGAAGCCAGGGGACCATCAGGGGCTGGTGAGCACACTGTCC ACAGCCTCCATGAACGGGGACCTGAAGTACGTTTAAACGAATTCGAGCTCGGTACCCGGG GATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAA GGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTC TAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGT CCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCT CTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCA GCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCC TGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAG GTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGC AGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGAT GGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCA CAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCG GTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCG CGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACT GAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCT CACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACG CTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGC ACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTC GCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTC GTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGA TTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACC CGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGT ATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGA GCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTC AAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGC AAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAG GCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCC GACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGT TCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCT TTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGG CTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCT TGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGAT TAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGG CTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAA AAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGT TTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTC TACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATT ATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGG ATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGG GGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGC GCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATC GCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGT CTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGA GGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAA ACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGA AGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTG CCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTT GTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTG CGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAA TTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTA TTTTTCTAAATACATTCAAATATGTATCCGCTCAT
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