SMYD1 ORF clone FXC03773

KOP
KOP Flexi HaloTag ORF List search

Flexi ORF Clone FXC03773

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Clone info.

Species

human

Clone Name

pF1KB5858 Sequence (with vector) Restriction Map

Product ID

FXC03773

HaloTag Clone PID

FHC03773

ORF Sequence

DNA sequence (1470 bp)
Protein sequence (490 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB527846]

Gene

KIBB5858

Symbol

SMYD1

Alias : BOP, KMT3D, ZMYND18, ZMYND22

Description

SET and MYND domain containing 1

Original Clone ID

cs00558

Features of the cloned ORF sequence

Description

Length: 1470 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 490 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS33240.1 4.2e-199 100.0 SMYD1 CCDS82480.1 9.7e-99 97.1 SMYD1 CCDS31022.1 2.8e-22 31.4 SMYD2 CCDS53486.1 1.3e-21 31.0 SMYD3 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR001214 18 252 PF00856 SET domain IPR002893 52 90 PF01753 Zinc finger HMMSmart IPR001214 7 259 SM00317 SET domain ProfileScan IPR002893 52 90 PS50865 Zinc finger IPR001214 203 252 PS50280 SET domain
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_938015 490 606846 100.0 100.0 NP_001317293 477 606846 97.1 100.0 NP_064582 433 610663 31.4 87.8 NP_001161212 428 608783 31.0 90.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB5858 Download

>KIBB5858  1470 bp
ATGACAATAGGGAGAATGGAGAACGTGGAGGTCTTCACCGCTGAGGGCAAAGGAAGGGGT
CTGAAGGCCACCAAGGAGTTCTGGGCTGCAGATATCATCTTTGCTGAGCGGGCTTATTCC
GCAGTGGTTTTTGACAGCCTTGTTAATTTTGTGTGCCACACCTGCTTCAAGAGGCAGGAG
AAGCTCCATCGCTGTGGGCAGTGCAAGTTTGCCCATTACTGCGACCGCACCTGCCAGAAG
GATGCTTGGCTGAACCACAAGAATGAATGTTCGGCCATCAAGAGATATGGGAAGGTGCCC
AATGAGAACATCAGGCTGGCGGCGCGCATCATGTGGAGGGTGGAGAGAGAAGGCACCGGG
CTCACGGAGGGCTGCCTGGTGTCCGTGGACGACTTGCAGAACCACGTGGAGCACTTTGGG
GAGGAGGAGCAGAAGGACCTGCGGGTGGACGTGGACACATTCTTGCAGTACTGGCCGCCG
CAGAGCCAGCAGTTCAGCATGCAGTACATCTCGCACATCTTCGGAGTGATTAACTGCAAC
GGTTTTACTCTCAGTGATCAGAGAGGCCTGCAGGCCGTGGGCGTAGGCATCTTCCCCAAC
CTGGGCCTGGTGAACCATGACTGTTGGCCCAACTGTACTGTCATATTTAACAATGGCAAT
CATGAGGCAGTGAAATCCATGTTTCATACCCAGATGAGAATTGAACTGCGGGCCCTAGGC
AAGATCTCAGAAGGAGAGGAGCTGACTGTGTCCTATATCGACTTCCTCAACGTTAGTGAA
GAACGCAAGAGGCAGCTGAAGAAGCAGTACTACTTTGACTGCACATGTGAACACTGCCAG
AAAAAACTGAAGGATGACCTCTTCCTGGGGGTGAAAGACAACCCCAAGCCCTCTCAGGAA
GTGGTGAAGGAGATGATACAATTCTCCAAGGATACATTGGAAAAGATAGACAAGGCTCGT
TCCGAGGGTTTGTATCATGAGGTTGTGAAATTATGCCGGGAGTGCCTGGAGAAGCAGGAG
CCAGTGTTTGCTGACACCAACATCTACATGCTGCGGATGCTGAGCATTGTTTCGGAGGTC
CTTTCCTACCTCCAGGCCTTTGAGGAGGCCTCGTTCTATGCCAGGAGGATGGTGGACGGC
TATATGAAGCTCTACCACCCCAACAATGCCCAACTGGGCATGGCCGTGATGCGGGCAGGG
CTGACCAACTGGCATGCTGGTAACATTGAGGTGGGGCACGGGATGATCTGCAAAGCCTAT
GCCATTCTCCTGGTGACACACGGACCCTCCCACCCCATCACTAAGGACTTAGAGGCCATG
CGGGTGCAGACGGAGATGGAGCTACGCATGTTCCGCCAGAACGAATTCATGTACTACAAG
ATGCGCGAGGCTGCCCTGAACAACCAGCCCATGCAGGTCATGGCCGAGCCCAGCAATGAG
CCATCCCCAGCTCTGTTCCACAAGAAGCAA

ORF Protein

Cloned ORF protein sequence for pF1KB5858 Download

>KIBB5858  490 aa
MTIGRMENVEVFTAEGKGRGLKATKEFWAADIIFAERAYSAVVFDSLVNFVCHTCFKRQE
KLHRCGQCKFAHYCDRTCQKDAWLNHKNECSAIKRYGKVPNENIRLAARIMWRVEREGTG
LTEGCLVSVDDLQNHVEHFGEEEQKDLRVDVDTFLQYWPPQSQQFSMQYISHIFGVINCN
GFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALG
KISEGEELTVSYIDFLNVSEERKRQLKKQYYFDCTCEHCQKKLKDDLFLGVKDNPKPSQE
VVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNIYMLRMLSIVSEV
LSYLQAFEEASFYARRMVDGYMKLYHPNNAQLGMAVMRAGLTNWHAGNIEVGHGMICKAY
AILLVTHGPSHPITKDLEAMRVQTEMELRMFRQNEFMYYKMREAALNNQPMQVMAEPSNE
PSPALFHKKQ

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB5858 Download

>pF1KB5858  4583 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGACAATAGGG
AGAATGGAGAACGTGGAGGTCTTCACCGCTGAGGGCAAAGGAAGGGGTCTGAAGGCCACC
AAGGAGTTCTGGGCTGCAGATATCATCTTTGCTGAGCGGGCTTATTCCGCAGTGGTTTTT
GACAGCCTTGTTAATTTTGTGTGCCACACCTGCTTCAAGAGGCAGGAGAAGCTCCATCGC
TGTGGGCAGTGCAAGTTTGCCCATTACTGCGACCGCACCTGCCAGAAGGATGCTTGGCTG
AACCACAAGAATGAATGTTCGGCCATCAAGAGATATGGGAAGGTGCCCAATGAGAACATC
AGGCTGGCGGCGCGCATCATGTGGAGGGTGGAGAGAGAAGGCACCGGGCTCACGGAGGGC
TGCCTGGTGTCCGTGGACGACTTGCAGAACCACGTGGAGCACTTTGGGGAGGAGGAGCAG
AAGGACCTGCGGGTGGACGTGGACACATTCTTGCAGTACTGGCCGCCGCAGAGCCAGCAG
TTCAGCATGCAGTACATCTCGCACATCTTCGGAGTGATTAACTGCAACGGTTTTACTCTC
AGTGATCAGAGAGGCCTGCAGGCCGTGGGCGTAGGCATCTTCCCCAACCTGGGCCTGGTG
AACCATGACTGTTGGCCCAACTGTACTGTCATATTTAACAATGGCAATCATGAGGCAGTG
AAATCCATGTTTCATACCCAGATGAGAATTGAACTGCGGGCCCTAGGCAAGATCTCAGAA
GGAGAGGAGCTGACTGTGTCCTATATCGACTTCCTCAACGTTAGTGAAGAACGCAAGAGG
CAGCTGAAGAAGCAGTACTACTTTGACTGCACATGTGAACACTGCCAGAAAAAACTGAAG
GATGACCTCTTCCTGGGGGTGAAAGACAACCCCAAGCCCTCTCAGGAAGTGGTGAAGGAG
ATGATACAATTCTCCAAGGATACATTGGAAAAGATAGACAAGGCTCGTTCCGAGGGTTTG
TATCATGAGGTTGTGAAATTATGCCGGGAGTGCCTGGAGAAGCAGGAGCCAGTGTTTGCT
GACACCAACATCTACATGCTGCGGATGCTGAGCATTGTTTCGGAGGTCCTTTCCTACCTC
CAGGCCTTTGAGGAGGCCTCGTTCTATGCCAGGAGGATGGTGGACGGCTATATGAAGCTC
TACCACCCCAACAATGCCCAACTGGGCATGGCCGTGATGCGGGCAGGGCTGACCAACTGG
CATGCTGGTAACATTGAGGTGGGGCACGGGATGATCTGCAAAGCCTATGCCATTCTCCTG
GTGACACACGGACCCTCCCACCCCATCACTAAGGACTTAGAGGCCATGCGGGTGCAGACG
GAGATGGAGCTACGCATGTTCCGCCAGAACGAATTCATGTACTACAAGATGCGCGAGGCT
GCCCTGAACAACCAGCCCATGCAGGTCATGGCCGAGCCCAGCAATGAGCCATCCCCAGCT
CTGTTCCACAAGAAGCAAGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAG
TCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTT
GGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTT
GAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGC
CCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGC
GTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTG
CGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCG
GCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCC
TGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGA
TCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCA
GGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATC
GGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTC
AAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGG
CTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGG
GACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCT
GCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCT
ACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAA
GCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAA
CTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGC
GATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGT
GGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCT
GAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCC
GATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGG
GGTTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAAT
ACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCA
AAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCC
TGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATA
AAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCC
GCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTC
ACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGA
ACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCC
GGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAG
GTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAG
GACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAG
CTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCA
GATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGA
CGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGAT
CTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGC
TGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCC
TGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCA
GTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCG
TTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAG
CCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCT
TTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCC
TGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCG
TAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAA
TAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGA
ACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGC
CCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGG
CCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATA
CATTCAAATATGTATCCGCTCAT