HOXA11 ORF clone FXC03109

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Flexi ORF Clone FXC03109

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Clone info.

Species

human

Clone Name

pF1KB8946 Sequence (with vector) Restriction Map

Product ID

FXC03109

HaloTag Clone PID

FHC03109

ORF Sequence

DNA sequence (939 bp)
Protein sequence (313 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB464571]

Gene

KIBB8946

Symbol

HOXA11

Alias : HOX1, HOX1I, RUSAT1

Description

homeobox A11

Original Clone ID

cp00981

Features of the cloned ORF sequence

Description

Length: 939 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 313 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS5411.1 4.8e-79 100.0 HOXA11 CCDS2265.1 1.5e-16 48.5 HOXD11 CCDS8867.1 2e-15 52.5 HOXC11 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR020479 263 274 PR00024 Homeobox IPR020479 278 288 PR00024 Homeobox IPR020479 288 297 PR00024 Homeobox HMMPfam IPR021918 25 171 PF12045 Domain of unknown function DUF3528 IPR001356 242 298 PF00046 Homeobox HMMSmart IPR001356 241 303 SM00389 Homeobox ProfileScan IPR001356 239 299 PS50071 Homeobox
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_005514 313 142958,605432 100.0 100.0 NP_067015 338 142986 48.5 99.7 NP_055027 304 605559 52.5 99.7 NP_061824 410 142957 33.4 97.1 NP_059105 342 605560 32.3 92.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB8946 Download

>KIBB8946  939 bp
ATGGATTTTGATGAGCGTGGTCCCTGCTCCTCTAACATGTATTTGCCAAGTTGTACTTAC
TACGTCTCGGGTCCAGATTTCTCCAGCCTCCCTTCTTTTCTGCCCCAGACCCCGTCTTCG
CGCCCAATGACATACTCCTACTCCTCCAACCTGCCCCAGGTCCAACCCGTGCGCGAAGTG
ACCTTCAGAGAGTACGCCATTGAGCCCGCCACTAAATGGCACCCCCGCGGCAATCTGGCC
CACTGCTACTCCGCGGAGGAGCTCGTGCACAGAGACTGCCTGCAGGCGCCCAGCGCGGCC
GGCGTGCCTGGCGACGTGCTGGCCAAGAGCTCGGCCAACGTCTACCACCACCCCACCCCC
GCAGTCTCGTCCAATTTCTATAGCACCGTGGGCAGGAACGGCGTCCTGCCACAGGCTTTC
GACCAGTTTTTCGAGACAGCCTACGGCACCCCGGAAAACCTCGCCTCCTCCGACTACCCC
GGGGACAAGAGCGCCGAGAAGGGGCCCCCGGCGGCCACGGCGACCTCCGCGGCGGCGGCG
GCGGCTGCAACGGGCGCGCCGGCAACTTCAAGTTCGGACAGCGGCGGCGGCGGCGGCTGC
CGGGAGACGGCGGCGGCAGCAGAGGAGAAAGAGCGGCGGCGGCGCCCCGAGAGCAGCAGC
AGCCCCGAGTCGTCTTCCGGCCACACTGAGGACAAGGCCGGCGGCTCCAGTGGCCAACGC
ACCCGCAAAAAGCGCTGCCCCTATACCAAGTACCAGATCCGAGAGCTGGAACGGGAGTTC
TTCTTCAGCGTCTACATTAACAAAGAGAAGCGCCTGCAACTGTCCCGCATGCTCAACCTC
ACTGATCGTCAAGTCAAAATCTGGTTTCAGAACAGGAGAATGAAGGAAAAAAAAATTAAC
AGAGACCGTTTACAGTACTACTCAGCAAATCCACTCCTC

ORF Protein

Cloned ORF protein sequence for pF1KB8946 Download

>KIBB8946  313 aa
MDFDERGPCSSNMYLPSCTYYVSGPDFSSLPSFLPQTPSSRPMTYSYSSNLPQVQPVREV
TFREYAIEPATKWHPRGNLAHCYSAEELVHRDCLQAPSAAGVPGDVLAKSSANVYHHPTP
AVSSNFYSTVGRNGVLPQAFDQFFETAYGTPENLASSDYPGDKSAEKGPPAATATSAAAA
AAATGAPATSSSDSGGGGGCRETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGSSGQR
TRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKIN
RDRLQYYSANPLL

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB8946 Download

>pF1KB8946  4052 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGATTTTGAT
GAGCGTGGTCCCTGCTCCTCTAACATGTATTTGCCAAGTTGTACTTACTACGTCTCGGGT
CCAGATTTCTCCAGCCTCCCTTCTTTTCTGCCCCAGACCCCGTCTTCGCGCCCAATGACA
TACTCCTACTCCTCCAACCTGCCCCAGGTCCAACCCGTGCGCGAAGTGACCTTCAGAGAG
TACGCCATTGAGCCCGCCACTAAATGGCACCCCCGCGGCAATCTGGCCCACTGCTACTCC
GCGGAGGAGCTCGTGCACAGAGACTGCCTGCAGGCGCCCAGCGCGGCCGGCGTGCCTGGC
GACGTGCTGGCCAAGAGCTCGGCCAACGTCTACCACCACCCCACCCCCGCAGTCTCGTCC
AATTTCTATAGCACCGTGGGCAGGAACGGCGTCCTGCCACAGGCTTTCGACCAGTTTTTC
GAGACAGCCTACGGCACCCCGGAAAACCTCGCCTCCTCCGACTACCCCGGGGACAAGAGC
GCCGAGAAGGGGCCCCCGGCGGCCACGGCGACCTCCGCGGCGGCGGCGGCGGCTGCAACG
GGCGCGCCGGCAACTTCAAGTTCGGACAGCGGCGGCGGCGGCGGCTGCCGGGAGACGGCG
GCGGCAGCAGAGGAGAAAGAGCGGCGGCGGCGCCCCGAGAGCAGCAGCAGCCCCGAGTCG
TCTTCCGGCCACACTGAGGACAAGGCCGGCGGCTCCAGTGGCCAACGCACCCGCAAAAAG
CGCTGCCCCTATACCAAGTACCAGATCCGAGAGCTGGAACGGGAGTTCTTCTTCAGCGTC
TACATTAACAAAGAGAAGCGCCTGCAACTGTCCCGCATGCTCAACCTCACTGATCGTCAA
GTCAAAATCTGGTTTCAGAACAGGAGAATGAAGGAAAAAAAAATTAACAGAGACCGTTTA
CAGTACTACTCAGCAAATCCACTCCTCGTTTAAACGAATTCGAGCTCGGTACCCGGGGAT
CCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGA
AGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAA
ACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCA
TAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTT
TGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCA
CCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGA
GTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTT
GGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGG
GGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGA
TTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAA
CAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTT
CTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGG
CTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAA
GCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCAC
CTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTT
GATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACT
CGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCG
CCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTG
ACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTC
ATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGT
GATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATC
GCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCG
GGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAA
GGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAA
AGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCT
CCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGAC
AGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCC
GACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTC
TCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTG
TGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGA
GTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAG
CAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTA
CACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAG
AGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTG
CAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTAC
GGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATC
AAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATG
GCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGT
AATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCG
ATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCG
CTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTG
CCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGA
TCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACA
GAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGT
GAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCA
GGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTT
TGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGA
AGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTA
AGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTT
TTCTAAATACATTCAAATATGTATCCGCTCAT