Gene/Protein Characteristic Table for
FXC03047
Species
human
Product ID
FXC03047
Linker Type
Cloning Site
SgfI-PmeI
Gene
KIBB8825
Description
chemokine (C-X-C motif) receptor 3
Original Clone ID
cp00860
Length: 1245 bp
Restriction map A
Restriction map B
Genomic Structure
-
Length: 415 aa
Result of homology search against nr database (
FASTA output,
Multiple alignment)
Entry Exp ID% Protein Source NP_001136269 1.2e-181 100.0 C-X-C chemokine... Homo sapiens CAB02143 3.7e-181 99.8 G PROTEIN-COUPL... Homo sapiens XP_003281930 6.4e-180 99.0 c-X-C chemokine... Nomascus leucogenys EHH60983 2.7e-179 98.6 hypothetical pr... Macaca fascicularis XP_003917914 1.9e-178 98.1 c-X-C chemokine... Papio anubis
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR004070 50 69 PR01532 C-X-C chemokine receptor IPR004070 72 83 PR01532 C-X-C chemokine receptor IPR004070 87 100 PR01532 C-X-C chemokine receptor IPR000355 90 108 PR00657 Chemokine receptor IPR000276 102 126 PR00237 Rhodopsin-like GPCR superfamily IPR004070 126 137 PR01532 C-X-C chemokine receptor IPR000276 135 156 PR00237 Rhodopsin-like GPCR superfamily IPR000355 149 159 PR00657 Chemokine receptor IPR000355 175 188 PR00657 Chemokine receptor IPR000276 178 200 PR00237 Rhodopsin-like GPCR superfamily IPR004070 199 211 PR01532 C-X-C chemokine receptor IPR000276 214 235 PR00237 Rhodopsin-like GPCR superfamily IPR004070 223 238 PR01532 C-X-C chemokine receptor IPR004070 251 263 PR01532 C-X-C chemokine receptor IPR000276 263 286 PR00237 Rhodopsin-like GPCR superfamily IPR000276 300 324 PR00237 Rhodopsin-like GPCR superfamily IPR004070 338 354 PR01532 C-X-C chemokine receptor IPR000355 343 357 PR00657 Chemokine receptor IPR000276 347 373 PR00237 Rhodopsin-like GPCR superfamily IPR000355 367 381 PR00657 Chemokine receptor IPR004070 399 414 PR01532 C-X-C chemokine receptor HMMPfam IPR000276 117 365 PF00001 Rhodopsin-like GPCR superfamily ProfileScan IPR000276 117 365 PS50262 Rhodopsin-like GPCR superfamily ScanRegExp IPR000276 184 200 PS00237 Rhodopsin-like GPCR superfamily
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 104 PALYSLLFLLGLLGNGAVAAVLL 126 PRIMARY 23 2 137 TFLLHLAVADTLLVLTLPLWAVD 159 PRIMARY 23 3 171 CKVAGALFNINFYAGALLLACIS 193 PRIMARY 23 4 215 VTLTCLAVWGLCLLFALPDFIFL 237 PRIMARY 23 5 264 VLQLVAGFLLPLLVMAYCYAHIL 286 PRIMARY 23 6 307 VVVAFALCWTPYHLVVLVDILMD 329 PRIMARY 23
Result of homology search against disease genes in OMIM database
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_001495 368 300574 100.0 88.0 NP_001707 372 601613 68.3 83.1 NP_001548 360 146928 68.5 81.2 NP_001829 378 600242 70.2 81.2 NP_001008540 356 162643,193670 68.3 83.4 Inquiries or Suggestions ?
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