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SpecieshumanProduct IDFXC02899Cloning SiteSgfI-PmeIGeneKIBB8630SymbolTMTC2
Alias : IBDBP1Descriptiontransmembrane and tetratricopeptide repeat containing 2Original Clone IDoc00287
Length: 2508 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 836 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS9025.1 0 100.0 TMTC2 CCDS81717.1 0 100.0 TMTC2 CCDS9032.1 1.4e-44 30.2 TMTC3 CCDS53772.1 7.8e-30 32.2 TMTC1 CCDS8718.1 3e-21 30.8 TMTC1
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition HMMPfam IPR013618 245 321 PF08409 Domain of unknown function DUF1736 IPR001440 493 522 PF00515 Tetratricopeptide TPR-1 IPR001440 527 554 PF00515 Tetratricopeptide TPR-1 IPR013105 608 638 PF07719 Tetratricopeptide TPR2 IPR001440 780 812 PF00515 Tetratricopeptide TPR-1 HMMSmart IPR019734 493 526 SM00028 Tetratricopeptide repeat IPR019734 527 560 SM00028 Tetratricopeptide repeat IPR019734 561 594 SM00028 Tetratricopeptide repeat IPR019734 606 639 SM00028 Tetratricopeptide repeat IPR019734 643 676 SM00028 Tetratricopeptide repeat IPR019734 677 710 SM00028 Tetratricopeptide repeat IPR019734 745 778 SM00028 Tetratricopeptide repeat IPR019734 779 812 SM00028 Tetratricopeptide repeat ProfileScan IPR019734 493 526 PS50005 Tetratricopeptide repeat IPR013026 493 812 PS50293 Tetratricopeptide repeat-containing IPR019734 527 560 PS50005 Tetratricopeptide repeat IPR019734 561 594 PS50005 Tetratricopeptide repeat IPR019734 606 639 PS50005 Tetratricopeptide repeat IPR019734 643 676 PS50005 Tetratricopeptide repeat IPR019734 677 710 PS50005 Tetratricopeptide repeat IPR019734 711 744 PS50005 Tetratricopeptide repeat IPR019734 745 778 PS50005 Tetratricopeptide repeat IPR019734 779 812 PS50005 Tetratricopeptide repeat
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 2 IAELVSSALGLALYLNTLSADFC 24 SECONDARY 23 2 85 WSYHLVNVLLHAAVTGLFTSFSK 107 SECONDARY 23 3 140 ADVGASLFFLLSLLCYIKHCSTR 162 PRIMARY 23 4 185 WKEQGVTVLAVSAVYDVFVFHR 206 SECONDARY 22 5 222 LSLFLSISLLIFWGSSLLGARLY 244 SECONDARY 23 6 310 NLHTVAFYTGLLLLAYYGLKSPS 332 SECONDARY 23 7 392 NIVVLSLSLLIIPFVPATNLFFY 414 PRIMARY 23 8 421 ERVLYIPSMGFCLLITVGARALY 443 PRIMARY 23 9 450 FLKSLIFYATATLIVFYGLKTAI 472 SECONDARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_689801 836 615856 100.0 100.0 XP_016874373 719 615856 100.0 86.0 NP_001180380 882 615855 32.2 98.9 XP_016875494 813 615855 31.7 98.9 XP_016875493 875 615855 33.6 98.9 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KB8630 Download>KIBB8630 2508 bp ATGATTGCAGAGTTGGTGAGCAGCGCTCTGGGGCTCGCCTTGTATCTCAACACCCTGAGT GCGGATTTCTGCTATGATGACAGCCGTGCTATCAAGACTAATCAGGACCTTCTCCCAGAA ACTCCATGGACGCACATTTTCTACAATGATTTTTGGGGGACTCTTCTAACCCACAGTGGC AGCCACAAGTCCTACCGGCCACTCTGCACTCTTTCTTTTCGCCTGAACCATGCCATTGGA GGGTTGAATCCCTGGAGCTACCATCTTGTCAATGTCCTGTTGCATGCAGCAGTCACTGGT CTCTTCACAAGCTTCTCCAAGATCCTCCTTGGTGATGGATACTGGACATTCATGGCTGGC TTGATGTTTGCTTCTCACCCCATTCACACGGAGGCAGTGGCAGGAATCGTGGGACGAGCC GATGTCGGGGCCAGTCTCTTCTTTCTCCTCTCCTTGCTCTGCTACATTAAACACTGTTCT ACAAGAGGCTACTCAGCCAGAACCTGGGGCTGGTTCCTGGGGTCAGGACTGTGCGCAGGA TGCAGCATGTTGTGGAAGGAACAAGGAGTGACTGTTCTCGCAGTTTCAGCAGTTTATGAT GTCTTTGTCTTTCACAGGCTGAAAATAAAACAGATATTACCTACCATTTACAAAAGGAAG AACTTGTCGCTTTTCCTAAGCATTAGTTTGTTAATTTTCTGGGGTTCCTCCCTTTTGGGT GCCCGGTTATACTGGATGGGAAACAAACCACCAAGCTTTTCCAACTCGGACAACCCCGCT GCTGATTCGGACAGCCTCCTCACCCGCACTCTCACCTTCTTCTACTTGCCAACCAAGAAC CTCTGGCTGTTGCTATGTCCAGATACCCTCAGTTTTGATTGGTCAATGGATGCTGTGCCT CTGCTCAAAACAGTTTGTGACTGGAGAAACCTACACACTGTGGCCTTCTATACTGGACTC CTTCTCCTTGCCTACTATGGTTTGAAGAGCCCGAGCGTAGACAGAGAATGCAATGGGAAA ACTGTAACAAATGGCAAGCAGAATGCAAATGGACATAGCTGCCTTTCAGATGTGGAGTAC CAGAACTCAGAGACTAAGTCCAGCTTTGCATCCAAAGTAGAAAATGGCATTAAAAACGAT GTATCACAGAGAACCCAGCTTCCTTCTACGGAGAACATTGTTGTTCTGTCTTTATCTTTG TTAATCATACCCTTTGTTCCTGCCACGAACCTGTTTTTCTATGTCGGCTTTGTAATTGCA GAGCGAGTATTATATATTCCTAGTATGGGCTTCTGCCTACTGATTACAGTGGGTGCTAGA GCCCTTTATGTCAAAGTCCAAAAGCGGTTCCTCAAGAGCTTGATTTTTTATGCTACAGCT ACACTAATTGTTTTTTATGGACTCAAGACTGCGATCAGGAATGGAGACTGGCAGAATGAG GAAATGCTTTATAGATCAGGGATAAAAGTAAACCCAGCTAAAGCATGGGGTAACCTTGGA AATGTTCTGAAGAGTCAGAGCAAAATTTCTGAAGCTGAAAGCGCCTATAGAAATGCTTTG TACTACCGCAGCAACATGGCTGACATGCTTTATAATTTAGGGCTACTTCTCCAGGAGAAC AGCAGGTTTGCAGAAGCACTACATTATTATAAATTGGCCATTGGGAGCAGGCCTACCCTG GCTTCTGCATATTTAAATACCGGTATTATTCTAATGAACCAAGGAAGGACGGAAGAAGCC CGACGGACATTCTTAAAGTGTTCGGAGATCCCAGATGAAAACCTAAAGGACCCTCATGCA CACAAGAGCTCTGTTACCAGTTGTTTGTACAACCTAGGAAAGCTGTATCATGAGCAGGGA CACTATGAGGAAGCCCTTAGTGTATACAAGGAAGCAATTCAGAAAATGCCAAGGCAGTTT GCCCCACAGAGCTTGTACAACATGATGGGTGAAGCATATATGCGTTTAAGCAAACTCCCC GAAGCAGAGCATTGGTATATGGAATCACTGAGATCCAAGACTGACCACATCCCTGCTCAT CTCACCTATGGGAAGCTGCTAGCTCTAACAGGTCGTAAGAGTGAGGCTGAAAAGCTCTTC TTGAAGGCTATTGAGCTGGATCCCACCAAAGGAAACTGTTACATGCATTATGGTCAGTTT CTTCTGGAAGAAGCTCGTCTCATAGAAGCAGCTGAGATGGCAAAAAAAGCAGCTGAACTA GACAGCACAGAGTTTGATGTTGTCTTCAATGCTGCCCACATGCTCAGACAGGCTAGCCTC AATGAAGCAGCTGAGAAGTATTATGATCTGGCAGCCAGGCTGAGGCCTAATTATCCGGCT GCTTTGATGAACCTGGGAGCCATTCTGCACCTCAATGGCAGACTCCAGAAGGCCGAGGCC AACTACCTGCGGGCCCTGCAGCTCAAGCCAGACGATGTCATCACACAGTCCAATCTCCGC AAACTGTGGAACATCATGGAAAAACAAGGCTTAAAGACTTCTAAGACC
Cloned ORF protein sequence for pF1KB8630 Download>KIBB8630 836 aa MIAELVSSALGLALYLNTLSADFCYDDSRAIKTNQDLLPETPWTHIFYNDFWGTLLTHSG SHKSYRPLCTLSFRLNHAIGGLNPWSYHLVNVLLHAAVTGLFTSFSKILLGDGYWTFMAG LMFASHPIHTEAVAGIVGRADVGASLFFLLSLLCYIKHCSTRGYSARTWGWFLGSGLCAG CSMLWKEQGVTVLAVSAVYDVFVFHRLKIKQILPTIYKRKNLSLFLSISLLIFWGSSLLG ARLYWMGNKPPSFSNSDNPAADSDSLLTRTLTFFYLPTKNLWLLLCPDTLSFDWSMDAVP LLKTVCDWRNLHTVAFYTGLLLLAYYGLKSPSVDRECNGKTVTNGKQNANGHSCLSDVEY QNSETKSSFASKVENGIKNDVSQRTQLPSTENIVVLSLSLLIIPFVPATNLFFYVGFVIA ERVLYIPSMGFCLLITVGARALYVKVQKRFLKSLIFYATATLIVFYGLKTAIRNGDWQNE EMLYRSGIKVNPAKAWGNLGNVLKSQSKISEAESAYRNALYYRSNMADMLYNLGLLLQEN SRFAEALHYYKLAIGSRPTLASAYLNTGIILMNQGRTEEARRTFLKCSEIPDENLKDPHA HKSSVTSCLYNLGKLYHEQGHYEEALSVYKEAIQKMPRQFAPQSLYNMMGEAYMRLSKLP EAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKLFLKAIELDPTKGNCYMHYGQF LLEEARLIEAAEMAKKAAELDSTEFDVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPA ALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNLRKLWNIMEKQGLKTSKT
Nucleotide Sequence (with vector) for pF1KB8630 Download>pF1KB8630 5621 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGATTGCAGAG TTGGTGAGCAGCGCTCTGGGGCTCGCCTTGTATCTCAACACCCTGAGTGCGGATTTCTGC TATGATGACAGCCGTGCTATCAAGACTAATCAGGACCTTCTCCCAGAAACTCCATGGACG CACATTTTCTACAATGATTTTTGGGGGACTCTTCTAACCCACAGTGGCAGCCACAAGTCC TACCGGCCACTCTGCACTCTTTCTTTTCGCCTGAACCATGCCATTGGAGGGTTGAATCCC TGGAGCTACCATCTTGTCAATGTCCTGTTGCATGCAGCAGTCACTGGTCTCTTCACAAGC TTCTCCAAGATCCTCCTTGGTGATGGATACTGGACATTCATGGCTGGCTTGATGTTTGCT TCTCACCCCATTCACACGGAGGCAGTGGCAGGAATCGTGGGACGAGCCGATGTCGGGGCC AGTCTCTTCTTTCTCCTCTCCTTGCTCTGCTACATTAAACACTGTTCTACAAGAGGCTAC TCAGCCAGAACCTGGGGCTGGTTCCTGGGGTCAGGACTGTGCGCAGGATGCAGCATGTTG TGGAAGGAACAAGGAGTGACTGTTCTCGCAGTTTCAGCAGTTTATGATGTCTTTGTCTTT CACAGGCTGAAAATAAAACAGATATTACCTACCATTTACAAAAGGAAGAACTTGTCGCTT TTCCTAAGCATTAGTTTGTTAATTTTCTGGGGTTCCTCCCTTTTGGGTGCCCGGTTATAC TGGATGGGAAACAAACCACCAAGCTTTTCCAACTCGGACAACCCCGCTGCTGATTCGGAC AGCCTCCTCACCCGCACTCTCACCTTCTTCTACTTGCCAACCAAGAACCTCTGGCTGTTG CTATGTCCAGATACCCTCAGTTTTGATTGGTCAATGGATGCTGTGCCTCTGCTCAAAACA GTTTGTGACTGGAGAAACCTACACACTGTGGCCTTCTATACTGGACTCCTTCTCCTTGCC TACTATGGTTTGAAGAGCCCGAGCGTAGACAGAGAATGCAATGGGAAAACTGTAACAAAT GGCAAGCAGAATGCAAATGGACATAGCTGCCTTTCAGATGTGGAGTACCAGAACTCAGAG ACTAAGTCCAGCTTTGCATCCAAAGTAGAAAATGGCATTAAAAACGATGTATCACAGAGA ACCCAGCTTCCTTCTACGGAGAACATTGTTGTTCTGTCTTTATCTTTGTTAATCATACCC TTTGTTCCTGCCACGAACCTGTTTTTCTATGTCGGCTTTGTAATTGCAGAGCGAGTATTA TATATTCCTAGTATGGGCTTCTGCCTACTGATTACAGTGGGTGCTAGAGCCCTTTATGTC AAAGTCCAAAAGCGGTTCCTCAAGAGCTTGATTTTTTATGCTACAGCTACACTAATTGTT TTTTATGGACTCAAGACTGCGATCAGGAATGGAGACTGGCAGAATGAGGAAATGCTTTAT AGATCAGGGATAAAAGTAAACCCAGCTAAAGCATGGGGTAACCTTGGAAATGTTCTGAAG AGTCAGAGCAAAATTTCTGAAGCTGAAAGCGCCTATAGAAATGCTTTGTACTACCGCAGC AACATGGCTGACATGCTTTATAATTTAGGGCTACTTCTCCAGGAGAACAGCAGGTTTGCA GAAGCACTACATTATTATAAATTGGCCATTGGGAGCAGGCCTACCCTGGCTTCTGCATAT TTAAATACCGGTATTATTCTAATGAACCAAGGAAGGACGGAAGAAGCCCGACGGACATTC TTAAAGTGTTCGGAGATCCCAGATGAAAACCTAAAGGACCCTCATGCACACAAGAGCTCT GTTACCAGTTGTTTGTACAACCTAGGAAAGCTGTATCATGAGCAGGGACACTATGAGGAA GCCCTTAGTGTATACAAGGAAGCAATTCAGAAAATGCCAAGGCAGTTTGCCCCACAGAGC TTGTACAACATGATGGGTGAAGCATATATGCGTTTAAGCAAACTCCCCGAAGCAGAGCAT TGGTATATGGAATCACTGAGATCCAAGACTGACCACATCCCTGCTCATCTCACCTATGGG AAGCTGCTAGCTCTAACAGGTCGTAAGAGTGAGGCTGAAAAGCTCTTCTTGAAGGCTATT GAGCTGGATCCCACCAAAGGAAACTGTTACATGCATTATGGTCAGTTTCTTCTGGAAGAA GCTCGTCTCATAGAAGCAGCTGAGATGGCAAAAAAAGCAGCTGAACTAGACAGCACAGAG TTTGATGTTGTCTTCAATGCTGCCCACATGCTCAGACAGGCTAGCCTCAATGAAGCAGCT GAGAAGTATTATGATCTGGCAGCCAGGCTGAGGCCTAATTATCCGGCTGCTTTGATGAAC CTGGGAGCCATTCTGCACCTCAATGGCAGACTCCAGAAGGCCGAGGCCAACTACCTGCGG GCCCTGCAGCTCAAGCCAGACGATGTCATCACACAGTCCAATCTCCGCAAACTGTGGAAC ATCATGGAAAAACAAGGCTTAAAGACTTCTAAGACCGTTTAAACGAATTCGAGCTCGGTA CCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGC CCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGG GGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCT TGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTG CTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCG GGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTT GCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCT GGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGA TGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAA CAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGAC TGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGG CGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAG GCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTT GTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTG TCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTG CATACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGA GCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAG GGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGAT CTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTT TCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTG GCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTT TACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTC TTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGACTATAA AAGGATCTAGGTGAAGATCCTTTTTGATAATCTCATGACCAAAATCCCTTAACGTGAGTT TTCGTTCCACTGAGCGTCAGACCCCGTAGAAAAGATCAAAGGATCTTCTTGAAATCCTTT TTTTCTGCGCGTAATCTGCTGCTTGCAAACAAAAAAACCACCGCTACCAGCGGTGGTTTG TTTGCCGGATCAAGAGCTACCAACTCTTTTTCCGAAGGTAACTGGCTTCAGCAGAGCGCA GATACCAAATACTGTCCTTCTAGTGTAGCCGTAGTTAGGCCACCACTTCAAGAACTCTGT AGCACCGCCTACATACCTCGCTCTGCTAATCCTGTTACCAGTGGCTGCTGCCAGTGGCGA TAAGTCGTGTCTTACCGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTC GGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACT GAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGA CAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGG AAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATT TTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTT ACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGA TTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATACCGGAAATACAGGAACGCA CGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTA AGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTA TCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCC GTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACT TACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGG CGTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT GATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAA CTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGG GAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTA TCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGA ACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGC ATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTT TGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT
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