SGTA ORF clone FXC02651

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Flexi ORF Clone FXC02651

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Clone info.

Species

human

Clone Name

pF1KB8195 Sequence (with vector) Restriction Map

Product ID

FXC02651

HaloTag Clone PID

FHC02651

ORF Sequence

DNA sequence (939 bp)
Protein sequence (313 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB464216]

Gene

KIBB8195

Symbol

SGTA

Alias : SGT, SGT1, Vpu, alphaSGT, hSGT

Description

small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha

Original Clone ID

cp00555

Features of the cloned ORF sequence

Description

Length: 939 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 313 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS12094.1 3.4e-108 100.0 SGTA CCDS3988.1 7.1e-57 58.3 SGTB The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR001440 96 124 PF00515 Tetratricopeptide TPR-1 IPR001440 126 157 PF00515 Tetratricopeptide TPR-1 IPR001440 160 192 PF00515 Tetratricopeptide TPR-1 HMMSmart IPR019734 91 124 SM00028 Tetratricopeptide repeat IPR019734 125 158 SM00028 Tetratricopeptide repeat IPR019734 159 192 SM00028 Tetratricopeptide repeat ProfileScan IPR019734 91 124 PS50005 Tetratricopeptide repeat IPR013026 91 192 PS50293 Tetratricopeptide repeat-containing IPR019734 125 158 PS50005 Tetratricopeptide repeat IPR019734 159 192 PS50005 Tetratricopeptide repeat
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) XP_011526480 313 603419 100.0 100.0 NP_003012 313 603419 100.0 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB8195 Download

>KIBB8195  939 bp
ATGGACAACAAGAAGCGCCTGGCCTACGCCATCATCCAGTTCCTGCATGACCAGCTCCGG
CACGGGGGCCTCTCGTCCGATGCTCAGGAGAGCTTGGAAGTCGCCATCCAGTGCCTGGAG
ACTGCGTTTGGGGTGACGGTAGAAGACAGTGACCTTGCGCTCCCTCAGACTCTGCCGGAG
ATATTTGAAGCGGCTGCCACGGGCAAGGAGATGCCGCAGGACCTGAGGAGCCCCGCGCGA
ACCCCGCCTTCCGAGGAGGACTCAGCAGAGGCAGAGCGCCTCAAAACCGAAGGAAACGAG
CAGATGAAAGTGGAAAACTTTGAAGCTGCCGTGCATTTCTACGGAAAAGCCATCGAGCTC
AACCCAGCCAACGCCGTCTATTTCTGCAACAGAGCCGCAGCCTACAGCAAACTCGGCAAC
TACGCAGGCGCGGTGCAGGACTGTGAGCGGGCCATCTGCATTGACCCGGCCTACAGCAAG
GCCTACGGCAGGATGGGCCTGGCGCTCTCCAGCCTCAACAAGCACGTGGAGGCCGTGGCT
TACTACAAGAAGGCTCTGGAGCTGGACCCCGACAACGAGACATACAAGTCCAACCTCAAG
ATAGCGGAGCTGAAGCTGCGGGAGGCCCCCAGCCCCACGGGAGGCGTGGGCAGCTTCGAC
ATCGCCGGCCTGCTGAACAACCCTGGCTTCATGAGCATGGCTTCGAACCTAATGAACAAT
CCCCAGATTCAGCAGCTCATGTCCGGCATGATTTCGGGTGGCAACAACCCCTTGGGAACT
CCCGGCACCAGCCCCTCGCAGAACGACCTGGCCAGCCTCATCCAGGCGGGCCAGCAGTTT
GCCCAGCAGATGCAGCAGCAGAACCCAGAGTTGATAGAGCAGCTCAGGAGCCAGATCCGG
AGTCGGACGCCCAGCGCCAGCAACGACGACCAGCAGGAG

ORF Protein

Cloned ORF protein sequence for pF1KB8195 Download

>KIBB8195  313 aa
MDNKKRLAYAIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTVEDSDLALPQTLPE
IFEAAATGKEMPQDLRSPARTPPSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL
NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVA
YYKKALELDPDNETYKSNLKIAELKLREAPSPTGGVGSFDIAGLLNNPGFMSMASNLMNN
PQIQQLMSGMISGGNNPLGTPGTSPSQNDLASLIQAGQQFAQQMQQQNPELIEQLRSQIR
SRTPSASNDDQQE

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB8195 Download

>pF1KB8195  4052 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGACAACAAG
AAGCGCCTGGCCTACGCCATCATCCAGTTCCTGCATGACCAGCTCCGGCACGGGGGCCTC
TCGTCCGATGCTCAGGAGAGCTTGGAAGTCGCCATCCAGTGCCTGGAGACTGCGTTTGGG
GTGACGGTAGAAGACAGTGACCTTGCGCTCCCTCAGACTCTGCCGGAGATATTTGAAGCG
GCTGCCACGGGCAAGGAGATGCCGCAGGACCTGAGGAGCCCCGCGCGAACCCCGCCTTCC
GAGGAGGACTCAGCAGAGGCAGAGCGCCTCAAAACCGAAGGAAACGAGCAGATGAAAGTG
GAAAACTTTGAAGCTGCCGTGCATTTCTACGGAAAAGCCATCGAGCTCAACCCAGCCAAC
GCCGTCTATTTCTGCAACAGAGCCGCAGCCTACAGCAAACTCGGCAACTACGCAGGCGCG
GTGCAGGACTGTGAGCGGGCCATCTGCATTGACCCGGCCTACAGCAAGGCCTACGGCAGG
ATGGGCCTGGCGCTCTCCAGCCTCAACAAGCACGTGGAGGCCGTGGCTTACTACAAGAAG
GCTCTGGAGCTGGACCCCGACAACGAGACATACAAGTCCAACCTCAAGATAGCGGAGCTG
AAGCTGCGGGAGGCCCCCAGCCCCACGGGAGGCGTGGGCAGCTTCGACATCGCCGGCCTG
CTGAACAACCCTGGCTTCATGAGCATGGCTTCGAACCTAATGAACAATCCCCAGATTCAG
CAGCTCATGTCCGGCATGATTTCGGGTGGCAACAACCCCTTGGGAACTCCCGGCACCAGC
CCCTCGCAGAACGACCTGGCCAGCCTCATCCAGGCGGGCCAGCAGTTTGCCCAGCAGATG
CAGCAGCAGAACCCAGAGTTGATAGAGCAGCTCAGGAGCCAGATCCGGAGTCGGACGCCC
AGCGCCAGCAACGACGACCAGCAGGAGGTTTAAACGAATTCGAGCTCGGTACCCGGGGAT
CCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGA
AGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAA
ACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCA
TAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTT
TGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCA
CCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGA
GTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTT
GGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGG
GGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGA
TTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAA
CAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTT
CTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGG
CTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAA
GCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCAC
CTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTT
GATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACT
CGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCG
CCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTG
ACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTC
ATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGT
GATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATC
GCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCG
GGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAA
GGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAA
AGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCT
CCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGAC
AGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCC
GACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTC
TCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTG
TGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGA
GTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAG
CAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTA
CACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAG
AGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTG
CAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTAC
GGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATC
AAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATG
GCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGT
AATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCG
ATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCG
CTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTG
CCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGA
TCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACA
GAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGT
GAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCA
GGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTT
TGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGA
AGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTA
AGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTT
TTCTAAATACATTCAAATATGTATCCGCTCAT