Gene/Protein Characteristic Table for
FXC02170
Species
human
Product ID
FXC02170
Linker Type
Cloning Site
SgfI-PmeI
Gene
KIBB5188
Description
melanin-concentrating hormone receptor 1
Original Clone ID
oc00040
Length: 1266 bp
Restriction map A
Restriction map B
Genomic Structure
-
Length: 422 aa
Result of homology search against nr database (
FASTA output,
Multiple alignment)
Entry Exp ID% Protein Source XP_003814658 2.6e-168 100.0 melanin-concent... Pan paniscus AAP36321 2.6e-168 100.0 G protein-coupl... synthetic construct NP_001012440 6.1e-168 99.8 melanin-concent... Pan troglodytes XP_003264838 2.2e-166 99.1 melanin-concent... Nomascus leucogenys EHH62291 3e-164 97.4 hypothetical pr... Macaca fascicularis
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
[ zoom out (x2) ]
Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR004047 96 110 PR01507 Melanin-concentrating hormone 1 receptor IPR008361 107 117 PR01783 Melanin-concentrating hormone receptor IPR000276 111 135 PR00237 Rhodopsin-like GPCR superfamily IPR004047 132 146 PR01507 Melanin-concentrating hormone 1 receptor IPR008361 145 154 PR01783 Melanin-concentrating hormone receptor IPR000276 147 168 PR00237 Rhodopsin-like GPCR superfamily IPR008361 161 172 PR01783 Melanin-concentrating hormone receptor IPR004047 171 181 PR01507 Melanin-concentrating hormone 1 receptor IPR008361 180 193 PR01783 Melanin-concentrating hormone receptor IPR000276 192 214 PR00237 Rhodopsin-like GPCR superfamily IPR004047 214 236 PR01507 Melanin-concentrating hormone 1 receptor IPR000276 228 249 PR00237 Rhodopsin-like GPCR superfamily IPR008361 246 259 PR01783 Melanin-concentrating hormone receptor IPR004047 255 275 PR01507 Melanin-concentrating hormone 1 receptor IPR008361 273 282 PR01783 Melanin-concentrating hormone receptor IPR000276 278 301 PR00237 Rhodopsin-like GPCR superfamily IPR004047 298 321 PR01507 Melanin-concentrating hormone 1 receptor IPR000276 323 347 PR00237 Rhodopsin-like GPCR superfamily IPR008361 343 356 PR01783 Melanin-concentrating hormone receptor IPR004047 350 369 PR01507 Melanin-concentrating hormone 1 receptor IPR000276 362 388 PR00237 Rhodopsin-like GPCR superfamily IPR004047 384 403 PR01507 Melanin-concentrating hormone 1 receptor IPR004047 403 422 PR01507 Melanin-concentrating hormone 1 receptor HMMPfam IPR000276 126 380 PF00001 Rhodopsin-like GPCR superfamily ProfileScan IPR000276 126 380 PS50262 Rhodopsin-like GPCR superfamily
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 110 IIMPSVFGTICLLGIIGNSTVIF 132 PRIMARY 23 2 145 NVPDIFIINLSVVDLLFLLGMPF 167 PRIMARY 23 3 196 QFTSTYILTAMAIDRYLATVHPI 218 SECONDARY 23 4 235 LLWALSFISITPVWLYARLIPFP 257 PRIMARY 23 5 276 WFTLYQFFLAFALPFVVITAAYV 298 PRIMARY 23 6 328 IAICLVFFVCWAPYYVLQLTQLS 350 PRIMARY 23 7 352 SRPTLTFVYLYNAAISLGYANSC 374 SECONDARY 23
Result of homology search against disease genes in OMIM database
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_005288 422 601751 100.0 100.0 NP_001041 369 182452 65.3 82.9 NP_001042 418 182453 62.1 80.1 NP_001044 364 102200,182455 65.8 81.5 NP_000902 372 165195 62.8 80.3 Inquiries or Suggestions ?
Send a message to office AT kazusa.or.jp