PCDHB5 ORF clone FXC01771

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Flexi ORF Clone FXC01771

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Clone info.

Species

human

Clone Name

pF1KB4360 Sequence (with vector) Restriction Map

Product ID

FXC01771

HaloTag Clone PID

FHC01771

ORF Sequence

DNA sequence (2385 bp)
Protein sequence (795 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB384932]

Gene

KIBB4360

Symbol

PCDHB5

Alias : PCDH-BETA5

Description

protocadherin beta 5

Original Clone ID

fh21451

Features of the cloned ORF sequence

Description

Length: 2385 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 795 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS4247.1 0 100.0 PCDHB5 CCDS4246.1 0 77.8 PCDHB4 CCDS4248.1 0 78.7 PCDHB6 CCDS4257.1 0 76.8 PCDHB15 CCDS4245.1 0 75.9 PCDHB3 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR002126 73 92 PR00205 Cadherin IPR002126 242 271 PR00205 Cadherin IPR002126 313 325 PR00205 Cadherin IPR002126 325 344 PR00205 Cadherin IPR002126 448 461 PR00205 Cadherin IPR002126 508 534 PR00205 Cadherin IPR002126 542 559 PR00205 Cadherin HMMPfam IPR013164 30 112 PF08266 Cadherin IPR002126 141 233 PF00028 Cadherin IPR002126 247 336 PF00028 Cadherin IPR002126 356 440 PF00028 Cadherin IPR002126 455 551 PF00028 Cadherin IPR002126 579 660 PF00028 Cadherin HMMSmart IPR002126 155 240 SM00112 Cadherin IPR002126 264 344 SM00112 Cadherin IPR002126 367 448 SM00112 Cadherin IPR002126 472 558 SM00112 Cadherin IPR002126 588 669 SM00112 Cadherin ProfileScan IPR002126 31 133 PS50268 Cadherin IPR002126 134 242 PS50268 Cadherin IPR002126 243 346 PS50268 Cadherin IPR002126 347 450 PS50268 Cadherin IPR002126 451 560 PS50268 Cadherin IPR002126 575 670 PS50268 Cadherin
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 13 QVMFLAILLLLWEAGSEAVRYSI 35 SECONDARY 23 2 688 YLVVALASVSSLFLFSVLLFVAV 710 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_056484 795 606331 100.0 100.0 NP_061761 795 606330 77.8 99.1 NP_061762 794 606332 78.7 98.5 NP_061758 787 606341 76.8 97.6 NP_061760 796 606329 76.1 99.6 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB4360 Download

>KIBB4360  2385 bp
ATGGAGACTGCGCTAGCAAAAACGCCACAGAAAAGGCAAGTTATGTTTCTTGCTATATTG
TTGCTTTTGTGGGAGGCTGGCTCTGAGGCAGTTAGGTATTCCATACCAGAAGAAACAGAA
AGTGGCTATTCTGTGGCCAACCTGGCAAAAGACCTGGGTCTTGGGGTGGGGGAACTGGCC
ACTCGGGGCGCGCGAATGCATTACAAAGGAAACAAAGAGCTCTTGCAGCTTGATATAAAG
ACCGGCAATTTGCTTCTATATGAAAAACTAGACCGGGAGGTGATGTGCGGGGCGACAGAA
CCCTGTATATTGCATTTCCAGCTCTTACTAGAAAATCCAGTGCAGTTTTTTCAAACTGAT
CTGCAGCTCACAGATATAAATGACCATGCCCCAGAGTTCCCAGAGAAGGAAATGCTCCTA
AAAATCCCAGAGAGCACCCAGCCAGGGACTGTGTTTCCCTTAAAAATAGCCCAGGACTTT
GACATAGGTAGCAACACTGTTCAGAACTACACAATCAGCCCAAATTCACACTTTCATGTT
GCTACGCATAATCGCGGAGATGGCAGAAAATACCCAGAGCTGGTGCTGGACAAAGCGCTG
GACCGGGAGGAGCGGCCTGAGCTCAGCTTAACACTCACTGCACTGGACGGTGGGGCTCCG
CCCAGGTCCGGGACCACCACAATTCGCATTGTCGTCTTGGATAATAATGACAACGCCCCC
GAATTTTTACAATCATTCTATGAGGTACAGGTGCCCGAGAACAGCCCCCTTAACTCCTTA
GTTGTCGTTGTCTCCGCTCGAGATTTAGATGCAGGAGCATATGGGAGTGTAGCCTATGCT
CTATTCCAAGGCGATGAAGTTACTCAACCATTTGTAATAGACGAGAAAACAGCAGAAATT
CGCCTGAAAAGGGCATTGGATTTCGAGGCAACTCCATATTATAACGTGGAAATTGTAGCC
ACAGATGGTGGGGGCCTTTCAGGAAAATGCACTGTGGCTATAGAAGTGGTGGATGTGAAT
GACAACGCCCCTGAACTCACCATGTCTACGCTCTCCAGCCCTACCCCAGAAAATGCCCCG
GAAACTGTAGTTGCCGTTTTCAGTGTTTCTGATCCAGACTCCGGGGACAACGGTAGGATG
ATTTGCTCCATCCAGAATGATCTCCCCTTTCTTTTGAAGCCCACATTAAAAAACTTTTAC
ACCCTAGTGACACAGAGAACACTGGACAGAGAGAGCCAAGCCGAGTACAACATCACCATC
ACTGTCACCGACATGGGGACACCCAGGCTGAAAACCGAGCACAACATAACGGTCCTGGTC
TCCGACGTCAATGACAACGCCCCCGCCTTCACCCAAACCTCCTACACCCTGTTCGTCCGA
GAGAACAACAGCCCCGCCCTGCACATCGGCAGTGTCAGCGCCACAGACAGAGACTCAGGC
ACCAACGCCCAGGTCACCTACTCGCTGCTGCCGCCCCAGAACCCACACCTGCGCCTCGCC
TCCCTGGTCTCCATCAACGCGGACAACGGCCACCTGTTTGCCCTCAGGTCGCTGGACTAC
GAGGCCCTGCAGGCGTTCGAGTTCCGCGTGGGAGCCACAGACCGCGGCTCCCCGGCGCTG
AGCAGCGAGGCGCTGGTGCGCGTGCTGGTGCTGGACGCCAACGACAACTCGCCCTTCGTG
CTGTATCCGCTGCAGAACGGCTCGGCGCCTTGCACCGAGCTGGTGCCCCGGGCGGCCGAG
CCGGGCTACCTGGTGACCAAGGTGGTGGCGGTGGACGGTGACTCGGGCCAGAACGCCTGG
CTGTCGTACCAGCTGCTCAAGGCCACGGAGCCCGGGCTGTTCAGCATGTGGGCGCACAAT
GGCGAGGTGCGCACCGCCAGGCTGCTGAGCGAGCGCGACGCGGCCAAGCACAGGCTGGTG
GTGCTGGTCAAGGACAATGGCGAGCCTCCGCGCTCGGCCACCGCCACGCTGCACGTGCTC
CTGGTGGACGGCTTCTCCCAGCCCTACCTGCCGCTGCCGGAGGCGGCCCCGGCCCAGGCC
CAGGCCGACTCGCTCACTGTCTACCTGGTGGTGGCATTGGCCTCGGTGTCGTCGCTCTTC
CTCTTTTCGGTGCTCCTGTTCGTGGCAGTGCGGCTGTGCAGGAGGAGCAGGGCGGCCCCG
GTCGGTCGCTGCTCGGTGCCCGAGGGCCCCTTTCCAGGGCATCTGGTGGACGTGAGCGGC
ACCGGGACCCTATCCCAGAGCTACCACTACGAGGTGTGTTTGACCGGAGACTCAGGGGCC
GGCGAGTTCAAGTTCCTGAAGCCGATTATTCCTAACCTTTTGCCCCAGGGCGCTGGTGAA
GAAATAGGGAAAACTGCTGCCTTCCGGAATAGCTTTGGATTAAAT

ORF Protein

Cloned ORF protein sequence for pF1KB4360 Download

>KIBB4360  795 aa
METALAKTPQKRQVMFLAILLLLWEAGSEAVRYSIPEETESGYSVANLAKDLGLGVGELA
TRGARMHYKGNKELLQLDIKTGNLLLYEKLDREVMCGATEPCILHFQLLLENPVQFFQTD
LQLTDINDHAPEFPEKEMLLKIPESTQPGTVFPLKIAQDFDIGSNTVQNYTISPNSHFHV
ATHNRGDGRKYPELVLDKALDREERPELSLTLTALDGGAPPRSGTTTIRIVVLDNNDNAP
EFLQSFYEVQVPENSPLNSLVVVVSARDLDAGAYGSVAYALFQGDEVTQPFVIDEKTAEI
RLKRALDFEATPYYNVEIVATDGGGLSGKCTVAIEVVDVNDNAPELTMSTLSSPTPENAP
ETVVAVFSVSDPDSGDNGRMICSIQNDLPFLLKPTLKNFYTLVTQRTLDRESQAEYNITI
TVTDMGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSG
TNAQVTYSLLPPQNPHLRLASLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPAL
SSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAW
LSYQLLKATEPGLFSMWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVL
LVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAAP
VGRCSVPEGPFPGHLVDVSGTGTLSQSYHYEVCLTGDSGAGEFKFLKPIIPNLLPQGAGE
EIGKTAAFRNSFGLN

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB4360 Download

>pF1KB4360  5498 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGAGACTGCG
CTAGCAAAAACGCCACAGAAAAGGCAAGTTATGTTTCTTGCTATATTGTTGCTTTTGTGG
GAGGCTGGCTCTGAGGCAGTTAGGTATTCCATACCAGAAGAAACAGAAAGTGGCTATTCT
GTGGCCAACCTGGCAAAAGACCTGGGTCTTGGGGTGGGGGAACTGGCCACTCGGGGCGCG
CGAATGCATTACAAAGGAAACAAAGAGCTCTTGCAGCTTGATATAAAGACCGGCAATTTG
CTTCTATATGAAAAACTAGACCGGGAGGTGATGTGCGGGGCGACAGAACCCTGTATATTG
CATTTCCAGCTCTTACTAGAAAATCCAGTGCAGTTTTTTCAAACTGATCTGCAGCTCACA
GATATAAATGACCATGCCCCAGAGTTCCCAGAGAAGGAAATGCTCCTAAAAATCCCAGAG
AGCACCCAGCCAGGGACTGTGTTTCCCTTAAAAATAGCCCAGGACTTTGACATAGGTAGC
AACACTGTTCAGAACTACACAATCAGCCCAAATTCACACTTTCATGTTGCTACGCATAAT
CGCGGAGATGGCAGAAAATACCCAGAGCTGGTGCTGGACAAAGCGCTGGACCGGGAGGAG
CGGCCTGAGCTCAGCTTAACACTCACTGCACTGGACGGTGGGGCTCCGCCCAGGTCCGGG
ACCACCACAATTCGCATTGTCGTCTTGGATAATAATGACAACGCCCCCGAATTTTTACAA
TCATTCTATGAGGTACAGGTGCCCGAGAACAGCCCCCTTAACTCCTTAGTTGTCGTTGTC
TCCGCTCGAGATTTAGATGCAGGAGCATATGGGAGTGTAGCCTATGCTCTATTCCAAGGC
GATGAAGTTACTCAACCATTTGTAATAGACGAGAAAACAGCAGAAATTCGCCTGAAAAGG
GCATTGGATTTCGAGGCAACTCCATATTATAACGTGGAAATTGTAGCCACAGATGGTGGG
GGCCTTTCAGGAAAATGCACTGTGGCTATAGAAGTGGTGGATGTGAATGACAACGCCCCT
GAACTCACCATGTCTACGCTCTCCAGCCCTACCCCAGAAAATGCCCCGGAAACTGTAGTT
GCCGTTTTCAGTGTTTCTGATCCAGACTCCGGGGACAACGGTAGGATGATTTGCTCCATC
CAGAATGATCTCCCCTTTCTTTTGAAGCCCACATTAAAAAACTTTTACACCCTAGTGACA
CAGAGAACACTGGACAGAGAGAGCCAAGCCGAGTACAACATCACCATCACTGTCACCGAC
ATGGGGACACCCAGGCTGAAAACCGAGCACAACATAACGGTCCTGGTCTCCGACGTCAAT
GACAACGCCCCCGCCTTCACCCAAACCTCCTACACCCTGTTCGTCCGAGAGAACAACAGC
CCCGCCCTGCACATCGGCAGTGTCAGCGCCACAGACAGAGACTCAGGCACCAACGCCCAG
GTCACCTACTCGCTGCTGCCGCCCCAGAACCCACACCTGCGCCTCGCCTCCCTGGTCTCC
ATCAACGCGGACAACGGCCACCTGTTTGCCCTCAGGTCGCTGGACTACGAGGCCCTGCAG
GCGTTCGAGTTCCGCGTGGGAGCCACAGACCGCGGCTCCCCGGCGCTGAGCAGCGAGGCG
CTGGTGCGCGTGCTGGTGCTGGACGCCAACGACAACTCGCCCTTCGTGCTGTATCCGCTG
CAGAACGGCTCGGCGCCTTGCACCGAGCTGGTGCCCCGGGCGGCCGAGCCGGGCTACCTG
GTGACCAAGGTGGTGGCGGTGGACGGTGACTCGGGCCAGAACGCCTGGCTGTCGTACCAG
CTGCTCAAGGCCACGGAGCCCGGGCTGTTCAGCATGTGGGCGCACAATGGCGAGGTGCGC
ACCGCCAGGCTGCTGAGCGAGCGCGACGCGGCCAAGCACAGGCTGGTGGTGCTGGTCAAG
GACAATGGCGAGCCTCCGCGCTCGGCCACCGCCACGCTGCACGTGCTCCTGGTGGACGGC
TTCTCCCAGCCCTACCTGCCGCTGCCGGAGGCGGCCCCGGCCCAGGCCCAGGCCGACTCG
CTCACTGTCTACCTGGTGGTGGCATTGGCCTCGGTGTCGTCGCTCTTCCTCTTTTCGGTG
CTCCTGTTCGTGGCAGTGCGGCTGTGCAGGAGGAGCAGGGCGGCCCCGGTCGGTCGCTGC
TCGGTGCCCGAGGGCCCCTTTCCAGGGCATCTGGTGGACGTGAGCGGCACCGGGACCCTA
TCCCAGAGCTACCACTACGAGGTGTGTTTGACCGGAGACTCAGGGGCCGGCGAGTTCAAG
TTCCTGAAGCCGATTATTCCTAACCTTTTGCCCCAGGGCGCTGGTGAAGAAATAGGGAAA
ACTGCTGCCTTCCGGAATAGCTTTGGATTAAATGTTTAAACGAATTCGAGCTCGGTACCC
GGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCG
AAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGC
CTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGC
TGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTT
TCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGG
TCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCG
CCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGT
AAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGG
CGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAA
GATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGG
GCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGC
CCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCA
GCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTC
ACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCA
TCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCAT
ACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCA
CGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGG
CTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTC
GTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCT
GGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCT
ACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTAC
GGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTC
TGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGACTATAAAAG
GATCTAGGTGAAGATCCTTTTTGATAATCTCATGACCAAAATCCCTTAACGTGAGTTTTC
GTTCCACTGAGCGTCAGACCCCGTAGAAAAGATCAAAGGATCTTCTTGAAATCCTTTTTT
TCTGCGCGTAATCTGCTGCTTGCAAACAAAAAAACCACCGCTACCAGCGGTGGTTTGTTT
GCCGGATCAAGAGCTACCAACTCTTTTTCCGAAGGTAACTGGCTTCAGCAGAGCGCAGAT
ACCAAATACTGTCCTTCTAGTGTAGCCGTAGTTAGGCCACCACTTCAAGAACTCTGTAGC
ACCGCCTACATACCTCGCTCTGCTAATCCTGTTACCAGTGGCTGCTGCCAGTGGCGATAA
GTCGTGTCTTACCGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGG
CTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAG
ATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAG
GTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAA
CGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTT
GTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACG
GTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTC
TGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATACCGGAAATACAGGAACGCACGC
TGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGT
GGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCA
GGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTG
ATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTAC
TGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGT
AGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT
AAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTC
AGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAA
CTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCT
GTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACG
TTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATC
AAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGT
TTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT