PCDHB4 ORF clone FXC01479

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Flexi ORF Clone FXC01479

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Clone info.

Species

human

Clone Name

pF1KB5128 Sequence (with vector) Restriction Map

Product ID

FXC01479

HaloTag Clone PID

ORF Sequence

DNA sequence (2385 bp)
Protein sequence (795 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1KOF Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB385050]

Gene

KIBB5128

Symbol

PCDHB4

Alias : PCDH-BETA4

Description

protocadherin beta 4

Original Clone ID

bh00161

Features of the cloned ORF sequence

Description

Length: 2385 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 795 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS4246.1 0 100.0 PCDHB4 CCDS4247.1 0 77.8 PCDHB5 CCDS4248.1 0 77.8 PCDHB6 CCDS4245.1 0 76.4 PCDHB3 CCDS4257.1 0 77.2 PCDHB15 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR002126 72 91 PR00205 Cadherin IPR002126 241 270 PR00205 Cadherin IPR002126 313 325 PR00205 Cadherin IPR002126 325 344 PR00205 Cadherin IPR002126 448 461 PR00205 Cadherin IPR002126 508 534 PR00205 Cadherin IPR002126 542 559 PR00205 Cadherin HMMPfam IPR013164 29 110 PF08266 Cadherin IPR002126 141 231 PF00028 Cadherin IPR002126 247 336 PF00028 Cadherin IPR002126 353 440 PF00028 Cadherin IPR002126 455 551 PF00028 Cadherin IPR002126 579 660 PF00028 Cadherin HMMSmart IPR002126 154 239 SM00112 Cadherin IPR002126 263 344 SM00112 Cadherin IPR002126 367 448 SM00112 Cadherin IPR002126 472 558 SM00112 Cadherin IPR002126 588 669 SM00112 Cadherin ProfileScan IPR002126 133 241 PS50268 Cadherin IPR002126 242 346 PS50268 Cadherin IPR002126 347 450 PS50268 Cadherin IPR002126 451 560 PS50268 Cadherin IPR002126 575 670 PS50268 Cadherin
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 11 RQVLAFILMVFLSQVRLEPIRYS 33 SECONDARY 23 2 688 YLVVALASVSSLFLFSVLLFVAV 710 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_061761 795 606330 100.0 100.0 NP_056484 795 606331 77.8 99.2 NP_061762 794 606332 77.8 98.7 NP_061760 796 606329 76.5 99.4 NP_061758 787 606341 77.2 98.2 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB5128 Download

>KIBB5128  2385 bp
ATGAAGAAGCTAGGGAGAATTCATCCAAACAGGCAAGTGTTGGCCTTTATTTTGATGGTG
TTCTTGTCTCAGGTTCGCCTCGAGCCTATTCGTTATTCTGTGTTGGAGGAAACAGAGAGC
GGCTCCTTTGTAGCCCATCTGGCCAAGGATCTGGGCCTGGGAATTGGGGAACTGGCCTCC
CGGTCAGCCCGGGTGCTGTCTGACGATGACAAGCAGCGTTTGCAGCTGGATCGTCAGACT
GGAGATTTGCTTCTGAGGGAGAAACTAGACCGGGAAGAGCTCTGTGGTCCTATTGAACCG
TGTGTACTGCATTTCCAAGTGTTCCTGGAAATGCCGGTGCAATTTTTTCAAGGAGAATTA
TTGATCCAGGACATAAATGATCACTCTCCAATATTCCCTGAAAGGGAAGTGCTCTTGAAA
ATACTAGAAAATAGCCAGCCGGGTACTCTATTTCCGTTGCTAATAGCTGAGGATTTGGAT
GTGGGCAGCAATGGTCTTCAAAAATACACAATCAGCCCCAATTCTCATTTTCACATTCTC
ACTCGAAATCATAGTGAGGGCAAGAAATACCCAGATTTGGTGCAGGACAAACCACTGGAT
CGAGAGGAGCAGCCTGAGTTCAGCTTAACCCTCGTGGCGCTGGATGGTGGGTCACCACCT
AGGTCTGGCACGGTCATGGTTCGAATCCTGATCATGGACATCAATGACAATGCTCCTGAG
TTTGTGCACACTCCATATGGGGTGCAGGTCCTGGAAAACAGCCCCCTAGACTCTCCAATT
GTTAGGGTCTTAGCTAGAGATATAGATGCTGGAAACTTCGGGAGTGTTTCTTATGGCTTA
TTCCAAGCATCAGATGAAATTAAACAAACTTTCTCAATAAATGAAGTCACGGGAGAAATA
CTGTTGAAAAAAAAATTGGATTTCGAAAAAATTAAATCTTACCATGTAGAAATTGAGGCC
ACAGATGGAGGAGGCCTTTCTGGAAAAGGCACTGTAGTCATAGAGGTGGTGGATGTGAAT
GACAATCCCCCAGAACTTATCATATCTTCACTCACCAGCTCCATCCCAGAAAATGCTCCT
GAGACGGTAGTCTCTATCTTCCGAATTCGAGATAGAGATTCCGGAGAAAATGGAAAGATG
ATTTGCTCTATTCCAGATAATCTACCGTTTATTCTAAAACCAACTTTGAAGAATTTTTAC
ACCCTGGTAACAGAGAGACCACTGGACCGAGAGACCAGCGCTGAGTACAACATCACCATC
GCCGTCACTGACTTGGGGACACCCAGGCTGAAAACCCAGCAGAACATAACCGTGCAGGTC
TCCGACGTCAATGACAACGCCCCCGCCTTCACCCAAACCTCCTACACCCTGTTCGTCCGC
GAGAACAACAGCCCCGCCCTGCACATCGGCAGTGTCAGCGCCACAGACAGAGACTCGGGC
ACCAACGCCCAGGTCACCTACTCGCTGCTGCCGCCCCAGGACCCGCACCTGCCCCTCGCC
TCCCTGGTCTCCATCAACGCAGACAACGGCCACCTGTTCGCCCTCAGGTCGCTGGACTAC
GAGGCCCTGCAGGCGTTCGAGTTCCGCGTGGGCGCCTCAGACCGCGGTTCTCCGGCTTTG
AGCAGCGAGGCGCTGGTGCGCGTGCTGGTGCTGGACACCAACGACAACTCGCCCTTCGTG
CTGTACCCGCTGCAGAATGGCTCCGCGCCCTGCACCGAGCTGGTGCCCCGGGCGGCCGAG
CCGGGCTACCTGGTGACCAAGGTGGTGGCGGTGGACGGCGACTCGGGCCAGAACGCCTGG
CTGTCGTACCAGCTGCTCAAGGCCACGGAGCCTGGGCTGTTCGGCGTGTGGGCGCACAAT
GGCGAGGTGCGCACCGCCAGGCTGCTGAGCGAGCGCGACGCAGCCAAGCACAGGCTCGTG
GTGCTTGTCAAGGACAATGGCGAGCCTCCGCGCTCGGCCACCGCCACGCTGCACGTGCTC
CTGGTGGATGGCTTCTCCCAGCCCTACCTGCCTCTCCCTGAGGCGGCCCCGGCCCAGGCC
CAGGCCGACTCTCTCACCGTCTACCTGGTGGTGGCGTTGGCCTCGGTGTCGTCGCTCTTC
CTCTTCTCGGTGCTCCTGTTCGTGGCGGTGCGGCTGTGCAGGAGGAGCAGGGCGGCCTCG
GTGGGTCGCTGCTCGGTGCCCGAGGGCCCCTTTCCAGGGCATCTGGTGGACGTAAGCGGC
ACCGGGACCCTGTCCCAGAGCTACCAGTACGAGGTGTGTCTGACAGGAGACTCTGGGACT
GGTGAGTTCAAGTTCCTGAAGCCAATATTTCCTAATCTCTTGGTTCAGGACACCGGGAGG
GAAGTTAAGGAAAACCCCAAGTTCAGAAATAGCTTGGTATTCAGT

ORF Protein

Cloned ORF protein sequence for pF1KB5128 Download

>KIBB5128  795 aa
MKKLGRIHPNRQVLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELAS
RSARVLSDDDKQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGEL
LIQDINDHSPIFPEREVLLKILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHIL
TRNHSEGKKYPDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPE
FVHTPYGVQVLENSPLDSPIVRVLARDIDAGNFGSVSYGLFQASDEIKQTFSINEVTGEI
LLKKKLDFEKIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPENAP
ETVVSIFRIRDRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITI
AVTDLGTPRLKTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSG
TNAQVTYSLLPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPAL
SSEALVRVLVLDTNDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAW
LSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVL
LVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAAS
VGRCSVPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIFPNLLVQDTGR
EVKENPKFRNSLVFS

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB5128 Download

>pF1KB5128  5498 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGAAGAAGCTA
GGGAGAATTCATCCAAACAGGCAAGTGTTGGCCTTTATTTTGATGGTGTTCTTGTCTCAG
GTTCGCCTCGAGCCTATTCGTTATTCTGTGTTGGAGGAAACAGAGAGCGGCTCCTTTGTA
GCCCATCTGGCCAAGGATCTGGGCCTGGGAATTGGGGAACTGGCCTCCCGGTCAGCCCGG
GTGCTGTCTGACGATGACAAGCAGCGTTTGCAGCTGGATCGTCAGACTGGAGATTTGCTT
CTGAGGGAGAAACTAGACCGGGAAGAGCTCTGTGGTCCTATTGAACCGTGTGTACTGCAT
TTCCAAGTGTTCCTGGAAATGCCGGTGCAATTTTTTCAAGGAGAATTATTGATCCAGGAC
ATAAATGATCACTCTCCAATATTCCCTGAAAGGGAAGTGCTCTTGAAAATACTAGAAAAT
AGCCAGCCGGGTACTCTATTTCCGTTGCTAATAGCTGAGGATTTGGATGTGGGCAGCAAT
GGTCTTCAAAAATACACAATCAGCCCCAATTCTCATTTTCACATTCTCACTCGAAATCAT
AGTGAGGGCAAGAAATACCCAGATTTGGTGCAGGACAAACCACTGGATCGAGAGGAGCAG
CCTGAGTTCAGCTTAACCCTCGTGGCGCTGGATGGTGGGTCACCACCTAGGTCTGGCACG
GTCATGGTTCGAATCCTGATCATGGACATCAATGACAATGCTCCTGAGTTTGTGCACACT
CCATATGGGGTGCAGGTCCTGGAAAACAGCCCCCTAGACTCTCCAATTGTTAGGGTCTTA
GCTAGAGATATAGATGCTGGAAACTTCGGGAGTGTTTCTTATGGCTTATTCCAAGCATCA
GATGAAATTAAACAAACTTTCTCAATAAATGAAGTCACGGGAGAAATACTGTTGAAAAAA
AAATTGGATTTCGAAAAAATTAAATCTTACCATGTAGAAATTGAGGCCACAGATGGAGGA
GGCCTTTCTGGAAAAGGCACTGTAGTCATAGAGGTGGTGGATGTGAATGACAATCCCCCA
GAACTTATCATATCTTCACTCACCAGCTCCATCCCAGAAAATGCTCCTGAGACGGTAGTC
TCTATCTTCCGAATTCGAGATAGAGATTCCGGAGAAAATGGAAAGATGATTTGCTCTATT
CCAGATAATCTACCGTTTATTCTAAAACCAACTTTGAAGAATTTTTACACCCTGGTAACA
GAGAGACCACTGGACCGAGAGACCAGCGCTGAGTACAACATCACCATCGCCGTCACTGAC
TTGGGGACACCCAGGCTGAAAACCCAGCAGAACATAACCGTGCAGGTCTCCGACGTCAAT
GACAACGCCCCCGCCTTCACCCAAACCTCCTACACCCTGTTCGTCCGCGAGAACAACAGC
CCCGCCCTGCACATCGGCAGTGTCAGCGCCACAGACAGAGACTCGGGCACCAACGCCCAG
GTCACCTACTCGCTGCTGCCGCCCCAGGACCCGCACCTGCCCCTCGCCTCCCTGGTCTCC
ATCAACGCAGACAACGGCCACCTGTTCGCCCTCAGGTCGCTGGACTACGAGGCCCTGCAG
GCGTTCGAGTTCCGCGTGGGCGCCTCAGACCGCGGTTCTCCGGCTTTGAGCAGCGAGGCG
CTGGTGCGCGTGCTGGTGCTGGACACCAACGACAACTCGCCCTTCGTGCTGTACCCGCTG
CAGAATGGCTCCGCGCCCTGCACCGAGCTGGTGCCCCGGGCGGCCGAGCCGGGCTACCTG
GTGACCAAGGTGGTGGCGGTGGACGGCGACTCGGGCCAGAACGCCTGGCTGTCGTACCAG
CTGCTCAAGGCCACGGAGCCTGGGCTGTTCGGCGTGTGGGCGCACAATGGCGAGGTGCGC
ACCGCCAGGCTGCTGAGCGAGCGCGACGCAGCCAAGCACAGGCTCGTGGTGCTTGTCAAG
GACAATGGCGAGCCTCCGCGCTCGGCCACCGCCACGCTGCACGTGCTCCTGGTGGATGGC
TTCTCCCAGCCCTACCTGCCTCTCCCTGAGGCGGCCCCGGCCCAGGCCCAGGCCGACTCT
CTCACCGTCTACCTGGTGGTGGCGTTGGCCTCGGTGTCGTCGCTCTTCCTCTTCTCGGTG
CTCCTGTTCGTGGCGGTGCGGCTGTGCAGGAGGAGCAGGGCGGCCTCGGTGGGTCGCTGC
TCGGTGCCCGAGGGCCCCTTTCCAGGGCATCTGGTGGACGTAAGCGGCACCGGGACCCTG
TCCCAGAGCTACCAGTACGAGGTGTGTCTGACAGGAGACTCTGGGACTGGTGAGTTCAAG
TTCCTGAAGCCAATATTTCCTAATCTCTTGGTTCAGGACACCGGGAGGGAAGTTAAGGAA
AACCCCAAGTTCAGAAATAGCTTGGTATTCAGTGTTTAAACGAATTCGAGCTCGGTACCC
GGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCG
AAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGC
CTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGC
TGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTT
TCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGG
TCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCG
CCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGT
AAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGG
CGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAA
GATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGG
GCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGC
CCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCA
GCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTC
ACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCA
TCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCAT
ACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCA
CGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGG
CTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTC
GTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCT
GGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCT
ACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTAC
GGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTC
TGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGACTATAAAAG
GATCTAGGTGAAGATCCTTTTTGATAATCTCATGACCAAAATCCCTTAACGTGAGTTTTC
GTTCCACTGAGCGTCAGACCCCGTAGAAAAGATCAAAGGATCTTCTTGAAATCCTTTTTT
TCTGCGCGTAATCTGCTGCTTGCAAACAAAAAAACCACCGCTACCAGCGGTGGTTTGTTT
GCCGGATCAAGAGCTACCAACTCTTTTTCCGAAGGTAACTGGCTTCAGCAGAGCGCAGAT
ACCAAATACTGTCCTTCTAGTGTAGCCGTAGTTAGGCCACCACTTCAAGAACTCTGTAGC
ACCGCCTACATACCTCGCTCTGCTAATCCTGTTACCAGTGGCTGCTGCCAGTGGCGATAA
GTCGTGTCTTACCGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGG
CTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAG
ATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAG
GTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAA
CGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTT
GTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACG
GTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTC
TGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATACCGGAAATACAGGAACGCACGC
TGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGT
GGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCA
GGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTG
ATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTAC
TGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGT
AGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT
AAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTC
AGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAA
CTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCT
GTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACG
TTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATC
AAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGT
TTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT